RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 FBXO41Q8TF61 875 aa28.16■■■□□ 2.1
LIME1-205ENST00000480139 UBAP1LF5GYI3 381 aa28.15■■■□□ 2.1
LIME1-205ENST00000480139 PRAM1Q96QH2 718 aa28.15■■■□□ 2.1
LIME1-205ENST00000480139 ADGRB2O60241 1585 aa28.14■■■□□ 2.1
LIME1-205ENST00000480139 CADPS2Q86UW7 1296 aa28.13■■■□□ 2.09
LIME1-205ENST00000480139 ATF3P18847 181 aa28.11■■■□□ 2.09
LIME1-205ENST00000480139 POGKQ9P215 609 aa28.11■■■□□ 2.09
LIME1-205ENST00000480139 CARD11Q9BXL7 1154 aa28.08■■■□□ 2.09
LIME1-205ENST00000480139 EIF3AQ14152 1382 aaKnown RBP28.08■■■□□ 2.09
LIME1-205ENST00000480139 MST1RQ04912 1400 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 QRICH2Q9H0J4 1663 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 FMN2Q9NZ56 1722 aa28.06■■■□□ 2.08
LIME1-205ENST00000480139 SLAIN2Q9P270 581 aa28.04■■■□□ 2.08
LIME1-205ENST00000480139 CENPJQ9HC77 1338 aaPredicted RBP28.03■■■□□ 2.08
LIME1-205ENST00000480139 SAFB2Q14151 953 aaKnown RBP eCLIP28.03■■■□□ 2.08
LIME1-205ENST00000480139 ROBO1Q9Y6N7 1651 aa28.02■■■□□ 2.08
LIME1-205ENST00000480139 C1orf167Q5SNV9 1468 aa27.98■■■□□ 2.07
LIME1-205ENST00000480139 PIP4K2BP78356 416 aa27.98■■■□□ 2.07
LIME1-205ENST00000480139 MINK1Q8N4C8 1332 aaPredicted RBP27.97■■■□□ 2.07
LIME1-205ENST00000480139 SBNO2Q9Y2G9 1366 aa27.97■■■□□ 2.07
LIME1-205ENST00000480139 ANKARQ7Z5J8 1434 aa27.95■■■□□ 2.07
LIME1-205ENST00000480139 SCAF1Q9H7N4 1312 aaKnown RBP27.94■■■□□ 2.06
LIME1-205ENST00000480139 TULP4Q9NRJ4 1543 aa27.94■■■□□ 2.06
LIME1-205ENST00000480139 USP32Q8NFA0 1604 aa27.93■■■□□ 2.06
LIME1-205ENST00000480139 WASLO00401 505 aaPredicted RBP27.93■■■□□ 2.06
LIME1-205ENST00000480139 HIRIP3Q9BW71 556 aaPredicted RBP27.93■■■□□ 2.06
LIME1-205ENST00000480139 USP47Q96K76 1375 aa27.92■■■□□ 2.06
LIME1-205ENST00000480139 BRINP3Q76B58 766 aa27.9■■■□□ 2.06
LIME1-205ENST00000480139 ILDR1Q86SU0 546 aaPredicted RBP27.9■■■□□ 2.06
LIME1-205ENST00000480139 RGPD8O14715 1765 aaPredicted RBP27.9■■■□□ 2.06
LIME1-205ENST00000480139 AHDC1Q5TGY3 1603 aaPredicted RBP27.89■■■□□ 2.06
LIME1-205ENST00000480139 KIF1AQ12756 1690 aa27.89■■■□□ 2.06
LIME1-205ENST00000480139 NHSL1Q5SYE7 1610 aa27.89■■■□□ 2.05
LIME1-205ENST00000480139 ITSN1Q15811 1721 aa27.88■■■□□ 2.05
LIME1-205ENST00000480139 ATP7BP35670 1465 aa27.86■■■□□ 2.05
LIME1-205ENST00000480139 CDK19Q9BWU1 502 aa27.85■■■□□ 2.05
LIME1-205ENST00000480139 TOPAZ1Q8N9V7 1692 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 EVC2Q86UK5 1308 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 PHLPP1O60346 1717 aa27.84■■■□□ 2.05
LIME1-205ENST00000480139 ST20-MTHFSA0A0A6YYL1 179 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 NUTM2FA1L443 756 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 SLC24A1O60721 1099 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 ORAI2Q96SN7 254 aa27.83■■■□□ 2.05
LIME1-205ENST00000480139 ESCO1Q5FWF5 840 aa27.82■■■□□ 2.04
LIME1-205ENST00000480139 PRR36Q9H6K5 1346 aa27.82■■■□□ 2.04
LIME1-205ENST00000480139 TESK2Q96S53 571 aa27.81■■■□□ 2.04
LIME1-205ENST00000480139 COL16A1Q07092 1604 aaPredicted RBP27.8■■■□□ 2.04
LIME1-205ENST00000480139 HSPA1LP34931 641 aa27.79■■■□□ 2.04
LIME1-205ENST00000480139 NUDT16Q96DE0 195 aaKnown RBP27.78■■■□□ 2.04
LIME1-205ENST00000480139 SRPK2P78362 688 aaKnown RBP27.77■■■□□ 2.04
LIME1-205ENST00000480139 EIF4G2P78344 907 aaKnown RBP eCLIP27.76■■■□□ 2.03
LIME1-205ENST00000480139 PHF8Q9UPP1 1060 aa27.76■■■□□ 2.03
LIME1-205ENST00000480139 NPHP3Q7Z494 1330 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 CABP2Q9NPB3 220 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 CCDC61Q9Y6R9 512 aa27.74■■■□□ 2.03
LIME1-205ENST00000480139 PUS7Q96PZ0 661 aaKnown RBP27.73■■■□□ 2.03
LIME1-205ENST00000480139 ATAD2Q6PL18 1390 aa27.73■■■□□ 2.03
LIME1-205ENST00000480139 PXDNQ92626 1479 aa27.72■■■□□ 2.03
LIME1-205ENST00000480139 SOS2Q07890 1332 aaPredicted RBP27.71■■■□□ 2.03
LIME1-205ENST00000480139 PPIP5K1Q6PFW1 1433 aa27.69■■■□□ 2.02
LIME1-205ENST00000480139 FOXO3O43524 673 aa27.69■■■□□ 2.02
LIME1-205ENST00000480139 HSPA5P11021 654 aaKnown RBP27.69■■■□□ 2.02
LIME1-205ENST00000480139 PLEKHG3A1L390 1219 aa27.68■■■□□ 2.02
LIME1-205ENST00000480139 TMF1P82094 1093 aa27.68■■■□□ 2.02
LIME1-205ENST00000480139 DDX17Q92841 729 aaKnown RBP27.68■■■□□ 2.02
LIME1-205ENST00000480139 POLR3AO14802 1390 aaPredicted RBP27.68■■■□□ 2.02
LIME1-205ENST00000480139 DISP3Q9P2K9 1392 aa27.67■■■□□ 2.02
LIME1-205ENST00000480139 SHPRHQ149N8 1683 aa27.66■■■□□ 2.02
LIME1-205ENST00000480139 ZEB1P37275 1124 aaPredicted RBP27.66■■■□□ 2.02
LIME1-205ENST00000480139 PMFBP1Q8TBY8 1022 aa27.66■■■□□ 2.02
LIME1-205ENST00000480139 TRPM3Q9HCF6 1732 aaPredicted RBP27.64■■■□□ 2.01
LIME1-205ENST00000480139 CDCA8Q53HL2 280 aa27.63■■■□□ 2.01
LIME1-205ENST00000480139 LRRC59Q96AG4 307 aaKnown RBP27.63■■■□□ 2.01
LIME1-205ENST00000480139 JCADQ9P266 1359 aa27.62■■■□□ 2.01
LIME1-205ENST00000480139 NGDNQ8NEJ9 315 aaKnown RBP27.62■■■□□ 2.01
LIME1-205ENST00000480139 NINLQ9Y2I6 1382 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 AKAP12Q02952 1782 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 ACEP12821 1306 aa27.61■■■□□ 2.01
LIME1-205ENST00000480139 SBNO1A3KN83 1393 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 PSME1Q06323 249 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 KRT28Q7Z3Y7 464 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 CABP1Q9NZU7 370 aa27.6■■■□□ 2.01
LIME1-205ENST00000480139 COL22A1Q8NFW1 1626 aaPredicted RBP27.58■■■□□ 2.01
LIME1-205ENST00000480139 XPCQ01831 940 aaPredicted RBP27.57■■■□□ 2
LIME1-205ENST00000480139 BRD4O60885 1362 aaPredicted RBP27.57■■■□□ 2
LIME1-205ENST00000480139 TNS3Q68CZ2 1445 aa27.57■■■□□ 2
LIME1-205ENST00000480139 ALS2Q96Q42 1657 aa27.56■■■□□ 2
LIME1-205ENST00000480139 PNPLA6Q8IY17 1366 aa27.56■■■□□ 2
LIME1-205ENST00000480139 CPSF1Q10570 1443 aaKnown RBP27.56■■■□□ 2
LIME1-205ENST00000480139 MON2Q7Z3U7 1717 aa27.55■■■□□ 2
LIME1-205ENST00000480139 SPATA31A3Q5VYP0 1347 aa27.55■■■□□ 2
LIME1-205ENST00000480139 MYOM1P52179 1685 aa27.55■■■□□ 2
LIME1-205ENST00000480139 CD163L1Q9NR16 1453 aa27.54■■■□□ 2
LIME1-205ENST00000480139 USP6P35125 1406 aa27.53■■■□□ 2
LIME1-205ENST00000480139 ZNF692Q9BU19 519 aaPredicted RBP27.53■■■□□ 2
LIME1-205ENST00000480139 NRKQ7Z2Y5 1582 aa27.52■■■□□ 2
LIME1-205ENST00000480139 SPATA31A6Q5VVP1 1343 aa27.52■■■□□ 2
LIME1-205ENST00000480139 ARHGEF10O15013 1369 aa27.51■■□□□ 1.99
LIME1-205ENST00000480139 SSH2Q76I76 1423 aa27.5■■□□□ 1.99
LIME1-205ENST00000480139 TMC1Q8TDI8 760 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms