RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 ADGRL3Q9HAR2 1447 aa22.57■■□□□ 1.2
COPS3-207ENST00000477299 C19orf44Q9H6X5 657 aa22.57■■□□□ 1.2
COPS3-207ENST00000477299 IQSEC2Q5JU85 1478 aa22.56■■□□□ 1.2
COPS3-207ENST00000477299 NCOA3Q9Y6Q9 1424 aa22.56■■□□□ 1.2
COPS3-207ENST00000477299 QRICH2Q9H0J4 1663 aa22.55■■□□□ 1.2
COPS3-207ENST00000477299 MSH6P52701 1360 aa22.55■■□□□ 1.2
COPS3-207ENST00000477299 UBAP1LF5GYI3 381 aa22.55■■□□□ 1.2
COPS3-207ENST00000477299 RGPD8O14715 1765 aaPredicted RBP22.54■■□□□ 1.2
COPS3-207ENST00000477299 NUTM2FA1L443 756 aa22.52■■□□□ 1.2
COPS3-207ENST00000477299 CENPJQ9HC77 1338 aaPredicted RBP22.52■■□□□ 1.2
COPS3-207ENST00000477299 FMN2Q9NZ56 1722 aa22.49■■□□□ 1.19
COPS3-207ENST00000477299 ST20-MTHFSA0A0A6YYL1 179 aa22.49■■□□□ 1.19
COPS3-207ENST00000477299 ATF3P18847 181 aa22.49■■□□□ 1.19
COPS3-207ENST00000477299 PIP4K2BP78356 416 aa22.49■■□□□ 1.19
COPS3-207ENST00000477299 USP47Q96K76 1375 aa22.48■■□□□ 1.19
COPS3-207ENST00000477299 CDC42BPGQ6DT37 1551 aa22.47■■□□□ 1.19
COPS3-207ENST00000477299 SLAIN2Q9P270 581 aa22.47■■□□□ 1.19
COPS3-207ENST00000477299 MST1RQ04912 1400 aa22.47■■□□□ 1.19
COPS3-207ENST00000477299 ADGRB2O60241 1585 aa22.46■■□□□ 1.19
COPS3-207ENST00000477299 TOM1O60784 492 aa22.46■■□□□ 1.19
COPS3-207ENST00000477299 CADPS2Q86UW7 1296 aa22.46■■□□□ 1.19
COPS3-207ENST00000477299 USP32Q8NFA0 1604 aa22.46■■□□□ 1.19
COPS3-207ENST00000477299 WASLO00401 505 aaPredicted RBP22.44■■□□□ 1.18
COPS3-207ENST00000477299 DCCP43146 1447 aa22.44■■□□□ 1.18
COPS3-207ENST00000477299 CDK19Q9BWU1 502 aa22.44■■□□□ 1.18
COPS3-207ENST00000477299 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
COPS3-207ENST00000477299 TULP4Q9NRJ4 1543 aa22.43■■□□□ 1.18
COPS3-207ENST00000477299 EIF3AQ14152 1382 aaKnown RBP22.43■■□□□ 1.18
COPS3-207ENST00000477299 TESK2Q96S53 571 aa22.43■■□□□ 1.18
COPS3-207ENST00000477299 ORAI2Q96SN7 254 aa22.43■■□□□ 1.18
COPS3-207ENST00000477299 ROBO1Q9Y6N7 1651 aa22.42■■□□□ 1.18
COPS3-207ENST00000477299 C1orf167Q5SNV9 1468 aa22.42■■□□□ 1.18
COPS3-207ENST00000477299 PRR36Q9H6K5 1346 aa22.42■■□□□ 1.18
COPS3-207ENST00000477299 HSPA5P11021 654 aaKnown RBP22.42■■□□□ 1.18
COPS3-207ENST00000477299 CABP2Q9NPB3 220 aa22.4■■□□□ 1.18
COPS3-207ENST00000477299 DDX17Q92841 729 aaKnown RBP22.39■■□□□ 1.17
COPS3-207ENST00000477299 EIF4G2P78344 907 aaKnown RBP eCLIP22.37■■□□□ 1.17
COPS3-207ENST00000477299 BRINP3Q76B58 766 aa22.37■■□□□ 1.17
COPS3-207ENST00000477299 ESCO1Q5FWF5 840 aa22.36■■□□□ 1.17
COPS3-207ENST00000477299 NUDT16Q96DE0 195 aaKnown RBP22.36■■□□□ 1.17
COPS3-207ENST00000477299 SRPK2P78362 688 aaKnown RBP22.35■■□□□ 1.17
COPS3-207ENST00000477299 SBNO2Q9Y2G9 1366 aa22.35■■□□□ 1.17
COPS3-207ENST00000477299 DISP3Q9P2K9 1392 aa22.34■■□□□ 1.17
COPS3-207ENST00000477299 ATP7BP35670 1465 aa22.34■■□□□ 1.17
COPS3-207ENST00000477299 EVC2Q86UK5 1308 aa22.33■■□□□ 1.17
COPS3-207ENST00000477299 PMFBP1Q8TBY8 1022 aa22.33■■□□□ 1.17
COPS3-207ENST00000477299 TOPAZ1Q8N9V7 1692 aa22.31■■□□□ 1.16
COPS3-207ENST00000477299 C11orf95C9JLR9 678 aaPredicted RBP22.31■■□□□ 1.16
COPS3-207ENST00000477299 ZEB1P37275 1124 aaPredicted RBP22.3■■□□□ 1.16
COPS3-207ENST00000477299 HSPA1LP34931 641 aa22.29■■□□□ 1.16
COPS3-207ENST00000477299 PHF8Q9UPP1 1060 aa22.29■■□□□ 1.16
COPS3-207ENST00000477299 ANKARQ7Z5J8 1434 aa22.29■■□□□ 1.16
COPS3-207ENST00000477299 ITSN1Q15811 1721 aa22.28■■□□□ 1.16
COPS3-207ENST00000477299 NHSL1Q5SYE7 1610 aa22.28■■□□□ 1.16
COPS3-207ENST00000477299 FOXO3O43524 673 aa22.28■■□□□ 1.16
COPS3-207ENST00000477299 XPCQ01831 940 aaPredicted RBP22.28■■□□□ 1.16
COPS3-207ENST00000477299 PHLPP1O60346 1717 aa22.28■■□□□ 1.16
COPS3-207ENST00000477299 CABP1Q9NZU7 370 aa22.26■■□□□ 1.15
COPS3-207ENST00000477299 CCDC61Q9Y6R9 512 aa22.26■■□□□ 1.15
COPS3-207ENST00000477299 PPIP5K1Q6PFW1 1433 aa22.24■■□□□ 1.15
COPS3-207ENST00000477299 KIF1AQ12756 1690 aa22.24■■□□□ 1.15
COPS3-207ENST00000477299 TMF1P82094 1093 aa22.24■■□□□ 1.15
COPS3-207ENST00000477299 AHDC1Q5TGY3 1603 aaPredicted RBP22.23■■□□□ 1.15
COPS3-207ENST00000477299 COL16A1Q07092 1604 aaPredicted RBP22.22■■□□□ 1.15
COPS3-207ENST00000477299 SLC12A5Q9H2X9 1139 aa22.22■■□□□ 1.15
COPS3-207ENST00000477299 PLEKHG3A1L390 1219 aa22.21■■□□□ 1.15
COPS3-207ENST00000477299 ACEP12821 1306 aa22.21■■□□□ 1.15
COPS3-207ENST00000477299 TMC1Q8TDI8 760 aa22.2■■□□□ 1.14
COPS3-207ENST00000477299 POLR3GLQ9BT43 218 aa22.2■■□□□ 1.14
COPS3-207ENST00000477299 KRT28Q7Z3Y7 464 aa22.19■■□□□ 1.14
COPS3-207ENST00000477299 NGDNQ8NEJ9 315 aaKnown RBP22.19■■□□□ 1.14
COPS3-207ENST00000477299 PXDNQ92626 1479 aa22.19■■□□□ 1.14
COPS3-207ENST00000477299 AKAP12Q02952 1782 aa22.18■■□□□ 1.14
COPS3-207ENST00000477299 MYOM1P52179 1685 aa22.18■■□□□ 1.14
COPS3-207ENST00000477299 SOS2Q07890 1332 aaPredicted RBP22.18■■□□□ 1.14
COPS3-207ENST00000477299 ATAD2Q6PL18 1390 aa22.17■■□□□ 1.14
COPS3-207ENST00000477299 PSME1Q06323 249 aa22.17■■□□□ 1.14
COPS3-207ENST00000477299 TRPM3Q9HCF6 1732 aaPredicted RBP22.17■■□□□ 1.14
COPS3-207ENST00000477299 PUS7Q96PZ0 661 aaKnown RBP22.16■■□□□ 1.14
COPS3-207ENST00000477299 CD163L1Q9NR16 1453 aa22.15■■□□□ 1.14
COPS3-207ENST00000477299 POLR3AO14802 1390 aaPredicted RBP22.15■■□□□ 1.14
COPS3-207ENST00000477299 NPHP3Q7Z494 1330 aa22.15■■□□□ 1.14
COPS3-207ENST00000477299 SLC24A1O60721 1099 aa22.14■■□□□ 1.13
COPS3-207ENST00000477299 KIF7Q2M1P5 1343 aa22.13■■□□□ 1.13
COPS3-207ENST00000477299 CPSF1Q10570 1443 aaKnown RBP22.11■■□□□ 1.13
COPS3-207ENST00000477299 MON2Q7Z3U7 1717 aa22.11■■□□□ 1.13
COPS3-207ENST00000477299 WASHC2AQ641Q2 1341 aa22.1■■□□□ 1.13
COPS3-207ENST00000477299 PLEKHG5O94827 1062 aa22.1■■□□□ 1.13
COPS3-207ENST00000477299 CDCA8Q53HL2 280 aa22.1■■□□□ 1.13
COPS3-207ENST00000477299 PAK3O75914 559 aaPredicted RBP22.09■■□□□ 1.13
COPS3-207ENST00000477299 ALS2Q96Q42 1657 aa22.09■■□□□ 1.13
COPS3-207ENST00000477299 SPATA31A3Q5VYP0 1347 aa22.08■■□□□ 1.13
COPS3-207ENST00000477299 LRRC59Q96AG4 307 aaKnown RBP22.08■■□□□ 1.13
COPS3-207ENST00000477299 A0A1W2PP64 1363 aa22.08■■□□□ 1.12
COPS3-207ENST00000477299 USP6P35125 1406 aa22.07■■□□□ 1.12
COPS3-207ENST00000477299 NUTM2GQ5VZR2 741 aa22.07■■□□□ 1.12
COPS3-207ENST00000477299 LMOD2Q6P5Q4 547 aa22.07■■□□□ 1.12
COPS3-207ENST00000477299 KTN1Q86UP2 1357 aaKnown RBP22.07■■□□□ 1.12
COPS3-207ENST00000477299 CCDC7Q96M83 1385 aa22.07■■□□□ 1.12
COPS3-207ENST00000477299 SHPRHQ149N8 1683 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms