RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 CD2BP2O95400 341 aaKnown RBP8.05□□□□□ -1.12
SCN1A-205ENST00000473295 PLA2G2CQ5R387 149 aa8.05□□□□□ -1.12
SCN1A-205ENST00000473295 MMP16P51512 607 aa8.04□□□□□ -1.12
SCN1A-205ENST00000473295 DIXDC1Q155Q3 683 aa8.03□□□□□ -1.12
SCN1A-205ENST00000473295 TRIM67Q6ZTA4 783 aa8.03□□□□□ -1.12
SCN1A-205ENST00000473295 AK7Q96M32 723 aa8.03□□□□□ -1.12
SCN1A-205ENST00000473295 REPIN1Q9BWE0 567 aaKnown RBP8.03□□□□□ -1.12
SCN1A-205ENST00000473295 PRDM9Q9NQV7 894 aa8.03□□□□□ -1.12
SCN1A-205ENST00000473295 GDF9O60383 454 aa8.02□□□□□ -1.13
SCN1A-205ENST00000473295 GIGYF2Q6Y7W6 1299 aaKnown RBP8.02□□□□□ -1.13
SCN1A-205ENST00000473295 DGAT1O75907 488 aa8.01□□□□□ -1.13
SCN1A-205ENST00000473295 DXOO77932 396 aaKnown RBP8.01□□□□□ -1.13
SCN1A-205ENST00000473295 PKDCCQ504Y2 493 aa8.01□□□□□ -1.13
SCN1A-205ENST00000473295 RETREG3Q86VR2 466 aa8.01□□□□□ -1.13
SCN1A-205ENST00000473295 TRIM66O15016 1216 aa8□□□□□ -1.13
SCN1A-205ENST00000473295 FDX1P10109 184 aa8□□□□□ -1.13
SCN1A-205ENST00000473295 HLA-CQ95604 372 aa8□□□□□ -1.13
SCN1A-205ENST00000473295 SPIRE2Q8WWL2 714 aa7.99□□□□□ -1.13
SCN1A-205ENST00000473295 TNFRSF10AO00220 468 aa7.98□□□□□ -1.13
SCN1A-205ENST00000473295 JUNDP17535 347 aa7.98□□□□□ -1.13
SCN1A-205ENST00000473295 GUCA2AQ02747 115 aa7.98□□□□□ -1.13
SCN1A-205ENST00000473295 GJA5P36382 358 aa7.97□□□□□ -1.13
SCN1A-205ENST00000473295 FOXC1Q12948 553 aa7.97□□□□□ -1.13
SCN1A-205ENST00000473295 PARP9Q8IXQ6 854 aa7.97□□□□□ -1.13
SCN1A-205ENST00000473295 BEGAINQ9BUH8 593 aa7.97□□□□□ -1.13
SCN1A-205ENST00000473295 FAM187AA6NFU0 413 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 SPDYE5A6NIY4 337 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 C6orf229H3BNL8 230 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 LCE2BO14633 110 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 TRIM32Q13049 653 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 PKD2L1Q9P0L9 805 aa7.96□□□□□ -1.14
SCN1A-205ENST00000473295 CYP4X1Q8N118 509 aa7.95□□□□□ -1.14
SCN1A-205ENST00000473295 CCDC24Q8N4L8 307 aa7.95□□□□□ -1.14
SCN1A-205ENST00000473295 MOXD2PA6NHM9 499 aa7.94□□□□□ -1.14
SCN1A-205ENST00000473295 SYMPKQ92797 1274 aaKnown RBP7.94□□□□□ -1.14
SCN1A-205ENST00000473295 BCANQ96GW7 911 aa7.94□□□□□ -1.14
SCN1A-205ENST00000473295 PCDHGC3Q9UN70 934 aa7.94□□□□□ -1.14
SCN1A-205ENST00000473295 WNT7AO00755 349 aa7.93□□□□□ -1.14
SCN1A-205ENST00000473295 MYT1Q01538 1121 aa7.93□□□□□ -1.14
SCN1A-205ENST00000473295 PDE4DQ08499 809 aa7.93□□□□□ -1.14
SCN1A-205ENST00000473295 MTMR2Q13614 643 aa7.93□□□□□ -1.14
SCN1A-205ENST00000473295 NUDT12Q9BQG2 462 aa7.93□□□□□ -1.14
SCN1A-205ENST00000473295 MS4A1P11836 297 aa7.92□□□□□ -1.14
SCN1A-205ENST00000473295 NDUFV2P19404 249 aa7.92□□□□□ -1.14
SCN1A-205ENST00000473295 WNT7BP56706 349 aa7.92□□□□□ -1.14
SCN1A-205ENST00000473295 TBC1D2Q9BYX2 928 aa7.92□□□□□ -1.14
SCN1A-205ENST00000473295 TOR4AQ9NXH8 423 aa7.92□□□□□ -1.14
SCN1A-205ENST00000473295 SLC24A1O60721 1099 aa7.91□□□□□ -1.14
SCN1A-205ENST00000473295 PTPRNQ16849 979 aa7.91□□□□□ -1.14
SCN1A-205ENST00000473295 DESI1Q6ICB0 168 aa7.91□□□□□ -1.14
SCN1A-205ENST00000473295 SLC24A3Q9HC58 644 aa7.91□□□□□ -1.14
SCN1A-205ENST00000473295 TTC24A2A3L6 582 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-205ENST00000473295 CCNYL3P0C7X3 344 aa7.9□□□□□ -1.14
SCN1A-205ENST00000473295 ZNF787Q6DD87 383 aa7.9□□□□□ -1.14
SCN1A-205ENST00000473295 RSBN1LQ6PCB5 846 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-205ENST00000473295 SPTLC1O15269 473 aa7.89□□□□□ -1.15
SCN1A-205ENST00000473295 AVPP01185 164 aa7.89□□□□□ -1.15
SCN1A-205ENST00000473295 SNIP1Q8TAD8 396 aaKnown RBP7.89□□□□□ -1.15
SCN1A-205ENST00000473295 PRR7Q8TB68 274 aa7.89□□□□□ -1.15
SCN1A-205ENST00000473295 CTC1Q2NKJ3 1217 aa7.88□□□□□ -1.15
SCN1A-205ENST00000473295 PRPF38BQ5VTL8 546 aaKnown RBP7.88□□□□□ -1.15
SCN1A-205ENST00000473295 CRIPAKQ8N1N5 446 aa7.88□□□□□ -1.15
SCN1A-205ENST00000473295 ZBTB3Q9H5J0 574 aa7.88□□□□□ -1.15
SCN1A-205ENST00000473295 RIC3Q7Z5B4 369 aa7.87□□□□□ -1.15
SCN1A-205ENST00000473295 MRGPRX2Q96LB1 330 aa7.87□□□□□ -1.15
SCN1A-205ENST00000473295 TUSC1Q2TAM9 212 aa7.86□□□□□ -1.15
SCN1A-205ENST00000473295 RC3H1Q5TC82 1133 aaKnown RBP7.86□□□□□ -1.15
SCN1A-205ENST00000473295 AAASQ9NRG9 546 aa7.86□□□□□ -1.15
SCN1A-205ENST00000473295 EVA1BQ9NVM1 165 aa7.86□□□□□ -1.15
SCN1A-205ENST00000473295 SMCPP49901 116 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-205ENST00000473295 KCNH2Q12809 1159 aa7.85□□□□□ -1.15
SCN1A-205ENST00000473295 RSPH6AQ9H0K4 717 aa7.85□□□□□ -1.15
SCN1A-205ENST00000473295 AXIN1O15169 862 aa7.84□□□□□ -1.15
SCN1A-205ENST00000473295 SKOR1P84550 965 aa7.84□□□□□ -1.15
SCN1A-205ENST00000473295 UNC93B1Q9H1C4 597 aa7.84□□□□□ -1.15
SCN1A-205ENST00000473295 HRCP23327 699 aa7.83□□□□□ -1.16
SCN1A-205ENST00000473295 MYSM1Q5VVJ2 828 aa7.83□□□□□ -1.16
SCN1A-205ENST00000473295 PTCRAQ6ISU1 281 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-205ENST00000473295 EHBP1Q8NDI1 1231 aa7.83□□□□□ -1.16
SCN1A-205ENST00000473295 PCDHB15Q9Y5E8 787 aa7.83□□□□□ -1.16
SCN1A-205ENST00000473295 SMPD1P17405 629 aa7.82□□□□□ -1.16
SCN1A-205ENST00000473295 LYPD8Q6UX82 237 aa7.82□□□□□ -1.16
SCN1A-205ENST00000473295 ST8SIA5O15466 376 aa7.81□□□□□ -1.16
SCN1A-205ENST00000473295 CLK2P49760 499 aaKnown RBP7.81□□□□□ -1.16
SCN1A-205ENST00000473295 NUTM2BA6NNL0 878 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-205ENST00000473295 NUTM2EB1AL46 878 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-205ENST00000473295 CFAP99D6REC4 459 aa7.8□□□□□ -1.16
SCN1A-205ENST00000473295 CTHP32929 405 aa7.8□□□□□ -1.16
SCN1A-205ENST00000473295 SH3BP2P78314 561 aa7.8□□□□□ -1.16
SCN1A-205ENST00000473295 CSPP1Q1MSJ5 1256 aa7.8□□□□□ -1.16
SCN1A-205ENST00000473295 NUTM2DQ5VT03 806 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-205ENST00000473295 NUTM2AQ8IVF1 878 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-205ENST00000473295 J3QL48 77 aa7.79□□□□□ -1.16
SCN1A-205ENST00000473295 HELBQ8NG08 1087 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-205ENST00000473295 LIMD1Q9UGP4 676 aa7.79□□□□□ -1.16
SCN1A-205ENST00000473295 LILRB3O75022 631 aa7.78□□□□□ -1.16
SCN1A-205ENST00000473295 ALDH1A1P00352 501 aa7.78□□□□□ -1.16
SCN1A-205ENST00000473295 VARSP26640 1264 aaKnown RBP7.78□□□□□ -1.16
SCN1A-205ENST00000473295 ZNF511Q8NB15 262 aa7.78□□□□□ -1.16
SCN1A-205ENST00000473295 CABLES1Q8TDN4 633 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms