RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 SOS2Q07890 1332 aaPredicted RBP10.54□□□□□ -0.72
HDAC1-204ENST00000471488 FOXO3O43524 673 aa10.53□□□□□ -0.72
HDAC1-204ENST00000471488 EP400Q96L91 3159 aa10.53□□□□□ -0.72
HDAC1-204ENST00000471488 NPHP3Q7Z494 1330 aa10.52□□□□□ -0.73
HDAC1-204ENST00000471488 IQGAP3Q86VI3 1631 aa10.51□□□□□ -0.73
HDAC1-204ENST00000471488 BLMP54132 1417 aaPredicted RBP10.51□□□□□ -0.73
HDAC1-204ENST00000471488 LMOD2Q6P5Q4 547 aa10.51□□□□□ -0.73
HDAC1-204ENST00000471488 ROBO2Q9HCK4 1378 aa10.51□□□□□ -0.73
HDAC1-204ENST00000471488 BCL9LQ86UU0 1499 aa10.5□□□□□ -0.73
HDAC1-204ENST00000471488 SEPT12Q8IYM1 358 aa10.5□□□□□ -0.73
HDAC1-204ENST00000471488 STK26Q9P289 416 aa10.5□□□□□ -0.73
HDAC1-204ENST00000471488 UNC5CLQ8IV45 518 aa10.49□□□□□ -0.73
HDAC1-204ENST00000471488 SPHKAPQ2M3C7 1700 aa10.49□□□□□ -0.73
HDAC1-204ENST00000471488 RALGAPBQ86X10 1494 aa10.49□□□□□ -0.73
HDAC1-204ENST00000471488 PPARGC1BQ86YN6 1023 aaKnown RBP10.48□□□□□ -0.73
HDAC1-204ENST00000471488 MYOM2P54296 1465 aa10.48□□□□□ -0.73
HDAC1-204ENST00000471488 VGFO15240 615 aaPredicted RBP10.47□□□□□ -0.73
HDAC1-204ENST00000471488 BAG6P46379 1132 aa10.47□□□□□ -0.73
HDAC1-204ENST00000471488 KRT27Q7Z3Y8 459 aa10.47□□□□□ -0.73
HDAC1-204ENST00000471488 NEXMIFQ5QGS0 1516 aa10.47□□□□□ -0.73
HDAC1-204ENST00000471488 COL22A1Q8NFW1 1626 aaPredicted RBP10.47□□□□□ -0.73
HDAC1-204ENST00000471488 CABLES1Q8TDN4 633 aa10.46□□□□□ -0.73
HDAC1-204ENST00000471488 LRPPRCP42704 1394 aaKnown RBP10.46□□□□□ -0.74
HDAC1-204ENST00000471488 CLTCL1P53675 1640 aa10.46□□□□□ -0.74
HDAC1-204ENST00000471488 MARF1Q9Y4F3 1742 aaKnown RBP10.45□□□□□ -0.74
HDAC1-204ENST00000471488 GLI3P10071 1580 aa10.45□□□□□ -0.74
HDAC1-204ENST00000471488 HRCP23327 699 aa10.45□□□□□ -0.74
HDAC1-204ENST00000471488 R3HDM1Q15032 1099 aaKnown RBP10.45□□□□□ -0.74
HDAC1-204ENST00000471488 BRWD3Q6RI45 1802 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 PXDNQ92626 1479 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 HFM1A2PYH4 1435 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 ROCK1Q13464 1354 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 EN1Q05925 392 aaPredicted RBP10.44□□□□□ -0.74
HDAC1-204ENST00000471488 FAM182BQ5T319 152 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 KRT28Q7Z3Y7 464 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 WAPLQ7Z5K2 1190 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 KIF1BO60333 1816 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 LAMC1P11047 1609 aa10.44□□□□□ -0.74
HDAC1-204ENST00000471488 FAM98CQ17RN3 349 aaKnown RBP10.43□□□□□ -0.74
HDAC1-204ENST00000471488 LRP5O75197 1615 aa10.43□□□□□ -0.74
HDAC1-204ENST00000471488 NAIPQ13075 1403 aa10.42□□□□□ -0.74
HDAC1-204ENST00000471488 SPATA31A3Q5VYP0 1347 aa10.41□□□□□ -0.74
HDAC1-204ENST00000471488 YY1P25490 414 aa10.41□□□□□ -0.74
HDAC1-204ENST00000471488 VPS72Q15906 364 aa10.41□□□□□ -0.74
HDAC1-204ENST00000471488 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.41□□□□□ -0.74
HDAC1-204ENST00000471488 SLIT2O94813 1529 aa10.4□□□□□ -0.74
HDAC1-204ENST00000471488 PSME1Q06323 249 aa10.4□□□□□ -0.74
HDAC1-204ENST00000471488 SAFB2Q14151 953 aaKnown RBP eCLIP10.4□□□□□ -0.74
HDAC1-204ENST00000471488 RGL3Q3MIN7 710 aa10.4□□□□□ -0.74
HDAC1-204ENST00000471488 TMEM132EQ6IEE7 984 aa10.4□□□□□ -0.74
HDAC1-204ENST00000471488 USP32Q8NFA0 1604 aa10.4□□□□□ -0.75
HDAC1-204ENST00000471488 CDC42BPGQ6DT37 1551 aa10.39□□□□□ -0.75
HDAC1-204ENST00000471488 CCDC144AA2RUR9 1427 aa10.39□□□□□ -0.75
HDAC1-204ENST00000471488 BTG4Q9NY30 223 aa10.38□□□□□ -0.75
HDAC1-204ENST00000471488 PPP1R1BQ9UD71 204 aaPredicted RBP10.38□□□□□ -0.75
HDAC1-204ENST00000471488 PLEKHH1Q9ULM0 1364 aa10.38□□□□□ -0.75
HDAC1-204ENST00000471488 PLCH1Q4KWH8 1693 aa10.38□□□□□ -0.75
HDAC1-204ENST00000471488 RPGRIP1LQ68CZ1 1315 aa10.37□□□□□ -0.75
HDAC1-204ENST00000471488 DCAF8L1A6NGE4 600 aa10.37□□□□□ -0.75
HDAC1-204ENST00000471488 EZH2Q15910 746 aaKnown RBP10.37□□□□□ -0.75
HDAC1-204ENST00000471488 PMFBP1Q8TBY8 1022 aa10.37□□□□□ -0.75
HDAC1-204ENST00000471488 SLC4A1APQ9BWU0 796 aaKnown RBP10.37□□□□□ -0.75
HDAC1-204ENST00000471488 PHF8Q9UPP1 1060 aa10.37□□□□□ -0.75
HDAC1-204ENST00000471488 TNS3Q68CZ2 1445 aa10.36□□□□□ -0.75
HDAC1-204ENST00000471488 FAM83GA6ND36 823 aa10.36□□□□□ -0.75
HDAC1-204ENST00000471488 ADGRF5Q8IZF2 1346 aa10.35□□□□□ -0.75
HDAC1-204ENST00000471488 TRIM37O94972 964 aa10.35□□□□□ -0.75
HDAC1-204ENST00000471488 PAK3O75914 559 aaPredicted RBP10.34□□□□□ -0.75
HDAC1-204ENST00000471488 APBA3O96018 575 aa10.34□□□□□ -0.75
HDAC1-204ENST00000471488 STRN4Q9NRL3 753 aa10.34□□□□□ -0.75
HDAC1-204ENST00000471488 USP35Q9P2H5 1018 aa10.34□□□□□ -0.75
HDAC1-204ENST00000471488 KIF1AQ12756 1690 aa10.34□□□□□ -0.75
HDAC1-204ENST00000471488 PPLO60437 1756 aa10.34□□□□□ -0.75
HDAC1-204ENST00000471488 ONECUT3O60422 494 aaPredicted RBP10.33□□□□□ -0.76
HDAC1-204ENST00000471488 ARHGEF10O15013 1369 aa10.33□□□□□ -0.76
HDAC1-204ENST00000471488 RGPD1P0DJD0 1748 aa10.33□□□□□ -0.76
HDAC1-204ENST00000471488 FMN2Q9NZ56 1722 aa10.33□□□□□ -0.76
HDAC1-204ENST00000471488 NWD2Q9ULI1 1742 aa10.32□□□□□ -0.76
HDAC1-204ENST00000471488 RRBP1Q9P2E9 1410 aaKnown RBP10.32□□□□□ -0.76
HDAC1-204ENST00000471488 RGPD8O14715 1765 aaPredicted RBP10.31□□□□□ -0.76
HDAC1-204ENST00000471488 PRDM11Q9NQV5 511 aa10.31□□□□□ -0.76
HDAC1-204ENST00000471488 POGKQ9P215 609 aa10.31□□□□□ -0.76
HDAC1-204ENST00000471488 PRAG1Q86YV5 1406 aa10.31□□□□□ -0.76
HDAC1-204ENST00000471488 NBPF8Q3BBV2 869 aa10.3□□□□□ -0.76
HDAC1-204ENST00000471488 NBPF14Q5TI25 921 aa10.3□□□□□ -0.76
HDAC1-204ENST00000471488 PRAM1Q96QH2 718 aa10.3□□□□□ -0.76
HDAC1-204ENST00000471488 HIRIP3Q9BW71 556 aaPredicted RBP10.3□□□□□ -0.76
HDAC1-204ENST00000471488 SBNO1A3KN83 1393 aa10.29□□□□□ -0.76
HDAC1-204ENST00000471488 PDE3BQ13370 1112 aa10.29□□□□□ -0.76
HDAC1-204ENST00000471488 CHRNA2Q15822 529 aa10.29□□□□□ -0.76
HDAC1-204ENST00000471488 YTHDC2Q9H6S0 1430 aaKnown RBP10.29□□□□□ -0.76
HDAC1-204ENST00000471488 ABCA3Q99758 1704 aa10.29□□□□□ -0.76
HDAC1-204ENST00000471488 IFT172Q9UG01 1749 aa10.29□□□□□ -0.76
HDAC1-204ENST00000471488 GPRASP1Q5JY77 1395 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 ABCC11Q96J66 1382 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 ADGRB2O60241 1585 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 EVA1CP58658 441 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 FAM196AQ6ZSG2 479 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 CAMKK2Q96RR4 588 aa10.28□□□□□ -0.76
HDAC1-204ENST00000471488 SPATA31A5Q5VU36 1347 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 305.6 ms