RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 ADGRL3Q9HAR2 1447 aa17.86■□□□□ 0.45
SPTLC1-204ENST00000469778 CENPJQ9HC77 1338 aaPredicted RBP17.84■□□□□ 0.45
SPTLC1-204ENST00000469778 RBM33Q96EV2 1170 aaKnown RBP17.83■□□□□ 0.44
SPTLC1-204ENST00000469778 UBAP1LF5GYI3 381 aa17.82■□□□□ 0.44
SPTLC1-204ENST00000469778 SLAIN2Q9P270 581 aa17.82■□□□□ 0.44
SPTLC1-204ENST00000469778 PLEKHH1Q9ULM0 1364 aa17.8■□□□□ 0.44
SPTLC1-204ENST00000469778 SBNO2Q9Y2G9 1366 aa17.8■□□□□ 0.44
SPTLC1-204ENST00000469778 FBXO41Q8TF61 875 aa17.8■□□□□ 0.44
SPTLC1-204ENST00000469778 XIRP1Q702N8 1843 aaKnown RBP17.79■□□□□ 0.44
SPTLC1-204ENST00000469778 SAFB2Q14151 953 aaKnown RBP eCLIP17.78■□□□□ 0.44
SPTLC1-204ENST00000469778 WASLO00401 505 aaPredicted RBP17.77■□□□□ 0.44
SPTLC1-204ENST00000469778 CDC42BPGQ6DT37 1551 aa17.77■□□□□ 0.44
SPTLC1-204ENST00000469778 ARHGEF28Q8N1W1 1705 aaKnown RBP17.77■□□□□ 0.44
SPTLC1-204ENST00000469778 EVC2Q86UK5 1308 aa17.76■□□□□ 0.43
SPTLC1-204ENST00000469778 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.76■□□□□ 0.43
SPTLC1-204ENST00000469778 EIF4G2P78344 907 aaKnown RBP eCLIP17.76■□□□□ 0.43
SPTLC1-204ENST00000469778 PUS7Q96PZ0 661 aaKnown RBP17.76■□□□□ 0.43
SPTLC1-204ENST00000469778 USP47Q96K76 1375 aa17.76■□□□□ 0.43
SPTLC1-204ENST00000469778 MINK1Q8N4C8 1332 aaPredicted RBP17.75■□□□□ 0.43
SPTLC1-204ENST00000469778 ADGRB2O60241 1585 aa17.74■□□□□ 0.43
SPTLC1-204ENST00000469778 ST20-MTHFSA0A0A6YYL1 179 aa17.74■□□□□ 0.43
SPTLC1-204ENST00000469778 ANKARQ7Z5J8 1434 aa17.73■□□□□ 0.43
SPTLC1-204ENST00000469778 CDCA8Q53HL2 280 aa17.73■□□□□ 0.43
SPTLC1-204ENST00000469778 MST1RQ04912 1400 aa17.72■□□□□ 0.43
SPTLC1-204ENST00000469778 NALCNQ8IZF0 1738 aa17.72■□□□□ 0.43
SPTLC1-204ENST00000469778 CDK19Q9BWU1 502 aa17.72■□□□□ 0.43
SPTLC1-204ENST00000469778 HIRIP3Q9BW71 556 aaPredicted RBP17.71■□□□□ 0.43
SPTLC1-204ENST00000469778 C1orf167Q5SNV9 1468 aa17.7■□□□□ 0.42
SPTLC1-204ENST00000469778 TESK2Q96S53 571 aa17.7■□□□□ 0.42
SPTLC1-204ENST00000469778 CCDC61Q9Y6R9 512 aa17.7■□□□□ 0.42
SPTLC1-204ENST00000469778 PIP4K2BP78356 416 aa17.69■□□□□ 0.42
SPTLC1-204ENST00000469778 TMF1P82094 1093 aa17.69■□□□□ 0.42
SPTLC1-204ENST00000469778 SRPK2P78362 688 aaKnown RBP17.68■□□□□ 0.42
SPTLC1-204ENST00000469778 NUDT16Q96DE0 195 aaKnown RBP17.68■□□□□ 0.42
SPTLC1-204ENST00000469778 ESCO1Q5FWF5 840 aa17.67■□□□□ 0.42
SPTLC1-204ENST00000469778 BRINP3Q76B58 766 aa17.67■□□□□ 0.42
SPTLC1-204ENST00000469778 QRICH2Q9H0J4 1663 aa17.67■□□□□ 0.42
SPTLC1-204ENST00000469778 TULP4Q9NRJ4 1543 aa17.67■□□□□ 0.42
SPTLC1-204ENST00000469778 FMN2Q9NZ56 1722 aa17.66■□□□□ 0.42
SPTLC1-204ENST00000469778 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
SPTLC1-204ENST00000469778 ATAD2Q6PL18 1390 aa17.66■□□□□ 0.42
SPTLC1-204ENST00000469778 HSPA5P11021 654 aaKnown RBP17.65■□□□□ 0.42
SPTLC1-204ENST00000469778 PHF8Q9UPP1 1060 aa17.65■□□□□ 0.42
SPTLC1-204ENST00000469778 PLEKHG3A1L390 1219 aa17.64■□□□□ 0.41
SPTLC1-204ENST00000469778 ORAI2Q96SN7 254 aa17.64■□□□□ 0.41
SPTLC1-204ENST00000469778 NPHP3Q7Z494 1330 aa17.63■□□□□ 0.41
SPTLC1-204ENST00000469778 NUTM2FA1L443 756 aa17.62■□□□□ 0.41
SPTLC1-204ENST00000469778 CABP2Q9NPB3 220 aa17.62■□□□□ 0.41
SPTLC1-204ENST00000469778 PRR36Q9H6K5 1346 aa17.62■□□□□ 0.41
SPTLC1-204ENST00000469778 NINLQ9Y2I6 1382 aa17.62■□□□□ 0.41
SPTLC1-204ENST00000469778 PSME1Q06323 249 aa17.61■□□□□ 0.41
SPTLC1-204ENST00000469778 ZNF692Q9BU19 519 aaPredicted RBP17.6■□□□□ 0.41
SPTLC1-204ENST00000469778 ATP7BP35670 1465 aa17.6■□□□□ 0.41
SPTLC1-204ENST00000469778 NGDNQ8NEJ9 315 aaKnown RBP17.59■□□□□ 0.41
SPTLC1-204ENST00000469778 ROBO1Q9Y6N7 1651 aa17.58■□□□□ 0.41
SPTLC1-204ENST00000469778 BRD4O60885 1362 aaPredicted RBP17.58■□□□□ 0.4
SPTLC1-204ENST00000469778 SOS2Q07890 1332 aaPredicted RBP17.58■□□□□ 0.4
SPTLC1-204ENST00000469778 FOXO3O43524 673 aa17.58■□□□□ 0.4
SPTLC1-204ENST00000469778 LRRC59Q96AG4 307 aaKnown RBP17.58■□□□□ 0.4
SPTLC1-204ENST00000469778 KIF1AQ12756 1690 aa17.58■□□□□ 0.4
SPTLC1-204ENST00000469778 POLR3AO14802 1390 aaPredicted RBP17.57■□□□□ 0.4
SPTLC1-204ENST00000469778 CABP1Q9NZU7 370 aa17.57■□□□□ 0.4
SPTLC1-204ENST00000469778 HSPA1LP34931 641 aa17.56■□□□□ 0.4
SPTLC1-204ENST00000469778 TERF2IPQ9NYB0 399 aa17.56■□□□□ 0.4
SPTLC1-204ENST00000469778 AHDC1Q5TGY3 1603 aaPredicted RBP17.56■□□□□ 0.4
SPTLC1-204ENST00000469778 PPIP5K1Q6PFW1 1433 aa17.55■□□□□ 0.4
SPTLC1-204ENST00000469778 USP32Q8NFA0 1604 aa17.55■□□□□ 0.4
SPTLC1-204ENST00000469778 KRT28Q7Z3Y7 464 aa17.55■□□□□ 0.4
SPTLC1-204ENST00000469778 PMFBP1Q8TBY8 1022 aa17.55■□□□□ 0.4
SPTLC1-204ENST00000469778 ITSN1Q15811 1721 aa17.55■□□□□ 0.4
SPTLC1-204ENST00000469778 ACEP12821 1306 aa17.54■□□□□ 0.4
SPTLC1-204ENST00000469778 ILDR1Q86SU0 546 aaPredicted RBP17.54■□□□□ 0.4
SPTLC1-204ENST00000469778 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
SPTLC1-204ENST00000469778 DISP3Q9P2K9 1392 aa17.53■□□□□ 0.4
SPTLC1-204ENST00000469778 HDGFL2Q7Z4V5 671 aaPredicted RBP17.53■□□□□ 0.4
SPTLC1-204ENST00000469778 TMC1Q8TDI8 760 aa17.53■□□□□ 0.4
SPTLC1-204ENST00000469778 RGPD8O14715 1765 aaPredicted RBP17.51■□□□□ 0.39
SPTLC1-204ENST00000469778 NHSL1Q5SYE7 1610 aa17.5■□□□□ 0.39
SPTLC1-204ENST00000469778 SLC12A5Q9H2X9 1139 aa17.5■□□□□ 0.39
SPTLC1-204ENST00000469778 TOPAZ1Q8N9V7 1692 aa17.5■□□□□ 0.39
SPTLC1-204ENST00000469778 JCADQ9P266 1359 aa17.5■□□□□ 0.39
SPTLC1-204ENST00000469778 CPSF1Q10570 1443 aaKnown RBP17.49■□□□□ 0.39
SPTLC1-204ENST00000469778 PXDNQ92626 1479 aa17.49■□□□□ 0.39
SPTLC1-204ENST00000469778 SPATA31A3Q5VYP0 1347 aa17.48■□□□□ 0.39
SPTLC1-204ENST00000469778 PHLPP1O60346 1717 aa17.48■□□□□ 0.39
SPTLC1-204ENST00000469778 ARHGEF10O15013 1369 aa17.48■□□□□ 0.39
SPTLC1-204ENST00000469778 DDX17Q92841 729 aaKnown RBP17.47■□□□□ 0.39
SPTLC1-204ENST00000469778 TTC21AQ8NDW8 1320 aa17.47■□□□□ 0.39
SPTLC1-204ENST00000469778 ANKRD36BQ8N2N9 1353 aa17.46■□□□□ 0.39
SPTLC1-204ENST00000469778 USP6P35125 1406 aa17.46■□□□□ 0.39
SPTLC1-204ENST00000469778 SPATA31A6Q5VVP1 1343 aa17.46■□□□□ 0.38
SPTLC1-204ENST00000469778 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
SPTLC1-204ENST00000469778 C11orf95C9JLR9 678 aaPredicted RBP17.45■□□□□ 0.38
SPTLC1-204ENST00000469778 COL16A1Q07092 1604 aaPredicted RBP17.45■□□□□ 0.38
SPTLC1-204ENST00000469778 KIF7Q2M1P5 1343 aa17.45■□□□□ 0.38
SPTLC1-204ENST00000469778 PAK3O75914 559 aaPredicted RBP17.44■□□□□ 0.38
SPTLC1-204ENST00000469778 XPCQ01831 940 aaPredicted RBP17.44■□□□□ 0.38
SPTLC1-204ENST00000469778 TNS3Q68CZ2 1445 aa17.43■□□□□ 0.38
SPTLC1-204ENST00000469778 SSH2Q76I76 1423 aa17.43■□□□□ 0.38
SPTLC1-204ENST00000469778 CCDC7Q96M83 1385 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms