RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 GCGRP47871 477 aa6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 BCAMP50895 628 aa6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 RSPH6AQ9H0K4 717 aa6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 WDR62O43379 1518 aa6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 CUX2O14529 1486 aa6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 SH3D19Q5HYK7 790 aa6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 NUTM1Q86Y26 1132 aa6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 GOPCQ9HD26 462 aa6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 TSR3Q9UJK0 312 aaKnown RBP6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 HPS5Q9UPZ3 1129 aa6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 THOC2Q8NI27 1593 aaKnown RBP6.59□□□□□ -1.35
TMEM39A-204ENST00000468545 KDM4AO75164 1064 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 USP46P62068 366 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 KMT5BQ4FZB7 885 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 SPIRE2Q8WWL2 714 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 PRR14Q9BWN1 585 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 TBC1D2Q9BYX2 928 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 KIF27Q86VH2 1401 aa6.58□□□□□ -1.36
TMEM39A-204ENST00000468545 PPP4CP60510 307 aa6.57□□□□□ -1.36
TMEM39A-204ENST00000468545 MYSM1Q5VVJ2 828 aa6.57□□□□□ -1.36
TMEM39A-204ENST00000468545 AQRO60306 1485 aaKnown RBP eCLIP6.57□□□□□ -1.369e-8■■■□□ 17.6
TMEM39A-204ENST00000468545 IFT140Q96RY7 1462 aa6.56□□□□□ -1.36
TMEM39A-204ENST00000468545 UBTFP17480 764 aaKnown RBP6.56□□□□□ -1.36
TMEM39A-204ENST00000468545 RANGAP1P46060 587 aaPredicted RBP6.56□□□□□ -1.36
TMEM39A-204ENST00000468545 SKIV2LQ15477 1246 aaKnown RBP6.56□□□□□ -1.36
TMEM39A-204ENST00000468545 ZNF608Q9ULD9 1512 aaPredicted RBP6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 HOXA2O43364 376 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 ACTN4O43707 911 aaKnown RBP6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 GJA5P36382 358 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 CLK2P49760 499 aaKnown RBP6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 NYAP1Q6ZVC0 841 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 WBP1LQ9NX94 342 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 IGF1RP08069 1367 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 ABCA10Q8WWZ4 1543 aa6.55□□□□□ -1.36
TMEM39A-204ENST00000468545 GAPVD1Q14C86 1478 aa6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 EEA1Q15075 1411 aa6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 APLP1P51693 650 aa6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 FUT2Q10981 343 aa6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 GRIPAP1Q4V328 841 aa6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 RSBN1LQ6PCB5 846 aaPredicted RBP6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 PCMTD1Q96MG8 357 aaPredicted RBP6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 TARBP1Q13395 1621 aaKnown RBP6.54□□□□□ -1.36
TMEM39A-204ENST00000468545 MOXD2PA6NHM9 499 aa6.53□□□□□ -1.36
TMEM39A-204ENST00000468545 SPTLC1O15269 473 aa6.53□□□□□ -1.36
TMEM39A-204ENST00000468545 ATP6V1AP38606 617 aa6.53□□□□□ -1.36
TMEM39A-204ENST00000468545 RIC3Q7Z5B4 369 aa6.53□□□□□ -1.36
TMEM39A-204ENST00000468545 CARMIL1Q5VZK9 1371 aa6.53□□□□□ -1.36
TMEM39A-204ENST00000468545 TUSC1Q2TAM9 212 aa6.52□□□□□ -1.37
TMEM39A-204ENST00000468545 IFFO2Q5TF58 517 aa6.52□□□□□ -1.37
TMEM39A-204ENST00000468545 POLR3EQ9NVU0 708 aa6.52□□□□□ -1.37
TMEM39A-204ENST00000468545 NDUFV2P19404 249 aa6.51□□□□□ -1.37
TMEM39A-204ENST00000468545 CHMP7Q8WUX9 453 aaPredicted RBP6.51□□□□□ -1.37
TMEM39A-204ENST00000468545 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.51□□□□□ -1.37
TMEM39A-204ENST00000468545 LIMD1Q9UGP4 676 aa6.51□□□□□ -1.37
TMEM39A-204ENST00000468545 GRIN2BQ13224 1484 aa6.5□□□□□ -1.37
TMEM39A-204ENST00000468545 FDX1P10109 184 aa6.5□□□□□ -1.37
TMEM39A-204ENST00000468545 MORN1Q5T089 497 aa6.5□□□□□ -1.37
TMEM39A-204ENST00000468545 HLA-CQ95604 372 aa6.5□□□□□ -1.37
TMEM39A-204ENST00000468545 PCDHB3Q9Y5E6 796 aa6.5□□□□□ -1.37
TMEM39A-204ENST00000468545 ITGBL1O95965 494 aaPredicted RBP6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 GUCA2AQ02747 115 aa6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 PUS10Q3MIT2 529 aaKnown RBP6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 PRPF38BQ5VTL8 546 aaKnown RBP6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 PROCA1Q8NCQ7 364 aaPredicted RBP6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 ATP1B4Q9UN42 357 aaPredicted RBP6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 WDR97A6NE52 1622 aa6.49□□□□□ -1.37
TMEM39A-204ENST00000468545 RAPGEF2Q9Y4G8 1499 aa6.48□□□□□ -1.37
TMEM39A-204ENST00000468545 A0A0G2JS52 829 aa6.48□□□□□ -1.37
TMEM39A-204ENST00000468545 PCDHGC3Q9UN70 934 aa6.48□□□□□ -1.37
TMEM39A-204ENST00000468545 EIF4G3O43432 1585 aaKnown RBP6.48□□□□□ -1.37
TMEM39A-204ENST00000468545 SNAPC4Q5SXM2 1469 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 ABCA5Q8WWZ7 1642 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 NR1I2O75469 434 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 CSPP1Q1MSJ5 1256 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 Q3C1V9 767 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 BLOC1S3Q6QNY0 202 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 ZBTB3Q9H5J0 574 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 SLC27A5Q9Y2P5 690 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 PCDHB15Q9Y5E8 787 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 GTF3C3Q9Y5Q9 886 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 GOLGA3Q08378 1498 aa6.47□□□□□ -1.37
TMEM39A-204ENST00000468545 ERICH3Q5RHP9 1530 aa6.46□□□□□ -1.37
TMEM39A-204ENST00000468545 PBRM1Q86U86 1689 aa6.46□□□□□ -1.37
TMEM39A-204ENST00000468545 FHAD1B1AJZ9 1412 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 LILRB3O75022 631 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 KCNC4Q03721 635 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 MTMR2Q13614 643 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 QPCTQ16769 361 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 PPP2R2DQ66LE6 453 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 PRXQ9BXM0 1461 aa6.46□□□□□ -1.38
TMEM39A-204ENST00000468545 SPDYE5A6NIY4 337 aa6.45□□□□□ -1.38
TMEM39A-204ENST00000468545 HRCP23327 699 aa6.45□□□□□ -1.38
TMEM39A-204ENST00000468545 COPS2P61201 443 aa6.45□□□□□ -1.38
TMEM39A-204ENST00000468545 MTRQ99707 1265 aa6.45□□□□□ -1.38
TMEM39A-204ENST00000468545 SALL2Q9Y467 1007 aaPredicted RBP6.45□□□□□ -1.38
TMEM39A-204ENST00000468545 NUTM2BA6NNL0 878 aaPredicted RBP6.44□□□□□ -1.38
TMEM39A-204ENST00000468545 NUTM2EB1AL46 878 aaPredicted RBP6.44□□□□□ -1.38
TMEM39A-204ENST00000468545 C6orf229H3BNL8 230 aa6.44□□□□□ -1.38
TMEM39A-204ENST00000468545 RFC5P40937 340 aa6.44□□□□□ -1.38
TMEM39A-204ENST00000468545 NUTM2DQ5VT03 806 aaPredicted RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms