RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PLCH2O75038 1416 aa9.39□□□□□ -0.91
HMGB1-207ENST00000468384 GOLGA2Q08379 1002 aa9.38□□□□□ -0.91
HMGB1-207ENST00000468384 KCTD12Q96CX2 325 aaKnown RBP9.38□□□□□ -0.91
HMGB1-207ENST00000468384 ZNF518AQ6AHZ1 1483 aa9.37□□□□□ -0.91
HMGB1-207ENST00000468384 WWC3Q9ULE0 1092 aa9.37□□□□□ -0.91
HMGB1-207ENST00000468384 ABCA6Q8N139 1617 aa9.36□□□□□ -0.91
HMGB1-207ENST00000468384 PYGBP11216 843 aa9.36□□□□□ -0.91
HMGB1-207ENST00000468384 BAG6P46379 1132 aa9.36□□□□□ -0.91
HMGB1-207ENST00000468384 USP21Q9UK80 565 aa9.36□□□□□ -0.91
HMGB1-207ENST00000468384 MAP3K1Q13233 1512 aa9.35□□□□□ -0.91
HMGB1-207ENST00000468384 CHD4Q14839 1912 aa9.35□□□□□ -0.91
HMGB1-207ENST00000468384 CLTCQ00610 1675 aaKnown RBP9.34□□□□□ -0.91
HMGB1-207ENST00000468384 G3V3G9 751 aa9.33□□□□□ -0.92
HMGB1-207ENST00000468384 PLEKHG5O94827 1062 aa9.33□□□□□ -0.92
HMGB1-207ENST00000468384 DCAF8Q5TAQ9 597 aa9.33□□□□□ -0.92
HMGB1-207ENST00000468384 ADGRD1Q6QNK2 874 aa9.33□□□□□ -0.92
HMGB1-207ENST00000468384 DNAJC5GQ8N7S2 189 aa9.33□□□□□ -0.92
HMGB1-207ENST00000468384 ATRNO75882 1429 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 TNS2Q63HR2 1409 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 FAM161AQ3B820 660 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 TNRQ92752 1358 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 DIP2AQ14689 1571 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 ITSN2Q9NZM3 1697 aa9.32□□□□□ -0.92
HMGB1-207ENST00000468384 ATP7AQ04656 1500 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 FAM135AQ9P2D6 1515 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 AHDC1Q5TGY3 1603 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-207ENST00000468384 TMEM92Q6UXU6 159 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 SPON1Q9HCB6 807 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 RTN4Q9NQC3 1192 aaKnown RBP9.31□□□□□ -0.92
HMGB1-207ENST00000468384 GOLGA3Q08378 1498 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 MLH3Q9UHC1 1453 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 UNC13BO14795 1591 aa9.31□□□□□ -0.92
HMGB1-207ENST00000468384 ZC3H13Q5T200 1668 aaKnown RBP9.3□□□□□ -0.92
HMGB1-207ENST00000468384 RALGAPBQ86X10 1494 aa9.3□□□□□ -0.92
HMGB1-207ENST00000468384 MSH6P52701 1360 aa9.3□□□□□ -0.92
HMGB1-207ENST00000468384 EN1Q05925 392 aaPredicted RBP9.3□□□□□ -0.92
HMGB1-207ENST00000468384 PROSER2Q86WR7 435 aaPredicted RBP9.3□□□□□ -0.92
HMGB1-207ENST00000468384 KIF14Q15058 1648 aa9.3□□□□□ -0.92
HMGB1-207ENST00000468384 ADGBQ8N7X0 1667 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 PLEKHD1A6NEE1 506 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 ADAMTS2O95450 1211 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 PBX2P40425 430 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 FAM212AQ96EL1 285 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 KIF27Q86VH2 1401 aa9.29□□□□□ -0.92
HMGB1-207ENST00000468384 ARHGAP23Q9P227 1491 aa9.28□□□□□ -0.92
HMGB1-207ENST00000468384 PTPN5P54829 565 aa9.28□□□□□ -0.92
HMGB1-207ENST00000468384 EFCAB2Q5VUJ9 269 aa9.28□□□□□ -0.92
HMGB1-207ENST00000468384 FBXO31Q5XUX0 539 aaPredicted RBP9.28□□□□□ -0.92
HMGB1-207ENST00000468384 FAM9AQ8IZU1 332 aaPredicted RBP9.28□□□□□ -0.92
HMGB1-207ENST00000468384 UGGT1Q9NYU2 1555 aa9.28□□□□□ -0.92
HMGB1-207ENST00000468384 FAM83GA6ND36 823 aa9.27□□□□□ -0.93
HMGB1-207ENST00000468384 KCNQ2O43526 872 aa9.27□□□□□ -0.93
HMGB1-207ENST00000468384 SLC24A1O60721 1099 aa9.27□□□□□ -0.93
HMGB1-207ENST00000468384 ZNF787Q6DD87 383 aa9.27□□□□□ -0.93
HMGB1-207ENST00000468384 FNBP4Q8N3X1 1017 aaPredicted RBP9.27□□□□□ -0.93
HMGB1-207ENST00000468384 AATKQ6ZMQ8 1374 aa9.26□□□□□ -0.93
HMGB1-207ENST00000468384 APLP1P51693 650 aa9.26□□□□□ -0.93
HMGB1-207ENST00000468384 TIAM1Q13009 1591 aa9.25□□□□□ -0.93
HMGB1-207ENST00000468384 KCNA6P17658 529 aa9.24□□□□□ -0.93
HMGB1-207ENST00000468384 AMER1Q5JTC6 1135 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-207ENST00000468384 GJD4Q96KN9 370 aaPredicted RBP9.24□□□□□ -0.93
HMGB1-207ENST00000468384 ABCC3O15438 1527 aa9.24□□□□□ -0.93
HMGB1-207ENST00000468384 PCNTO95613 3336 aa9.24□□□□□ -0.93
HMGB1-207ENST00000468384 SHANK3Q9BYB0 1731 aa9.23□□□□□ -0.93
HMGB1-207ENST00000468384 SETD5Q9C0A6 1442 aa9.22□□□□□ -0.93
HMGB1-207ENST00000468384 NLRP1Q9C000 1473 aa9.22□□□□□ -0.93
HMGB1-207ENST00000468384 PRDM15P57071 1507 aaPredicted RBP9.22□□□□□ -0.93
HMGB1-207ENST00000468384 HRO43593 1189 aa9.22□□□□□ -0.93
HMGB1-207ENST00000468384 GGT6Q6P531 493 aa9.22□□□□□ -0.93
HMGB1-207ENST00000468384 JMYQ8N9B5 988 aa9.22□□□□□ -0.93
HMGB1-207ENST00000468384 LRRC59Q96AG4 307 aaKnown RBP9.2□□□□□ -0.94
HMGB1-207ENST00000468384 PNPLA6Q8IY17 1366 aa9.2□□□□□ -0.94
HMGB1-207ENST00000468384 EZH2Q15910 746 aaKnown RBP9.19□□□□□ -0.94
HMGB1-207ENST00000468384 MIA2Q96PC5 1412 aa9.19□□□□□ -0.94
HMGB1-207ENST00000468384 LTKP29376 864 aa9.18□□□□□ -0.94
HMGB1-207ENST00000468384 CAMSAP2Q08AD1 1489 aa9.18□□□□□ -0.94
HMGB1-207ENST00000468384 SPHKAPQ2M3C7 1700 aa9.17□□□□□ -0.94
HMGB1-207ENST00000468384 A2MP01023 1474 aa9.17□□□□□ -0.94
HMGB1-207ENST00000468384 MLLT1Q03111 559 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-207ENST00000468384 BRINP3Q76B58 766 aa9.17□□□□□ -0.94
HMGB1-207ENST00000468384 NUP153P49790 1475 aaKnown RBP9.16□□□□□ -0.94
HMGB1-207ENST00000468384 GFRA3O60609 400 aa9.16□□□□□ -0.94
HMGB1-207ENST00000468384 SEPT12Q8IYM1 358 aa9.16□□□□□ -0.94
HMGB1-207ENST00000468384 PROM2Q8N271 834 aa9.16□□□□□ -0.94
HMGB1-207ENST00000468384 KLRG1Q96E93 195 aa9.16□□□□□ -0.94
HMGB1-207ENST00000468384 SYT17Q9BSW7 474 aa9.16□□□□□ -0.94
HMGB1-207ENST00000468384 KDM5AP29375 1690 aaKnown RBP9.16□□□□□ -0.94
HMGB1-207ENST00000468384 DISP2A7MBM2 1401 aa9.15□□□□□ -0.94
HMGB1-207ENST00000468384 KRT27Q7Z3Y8 459 aa9.15□□□□□ -0.94
HMGB1-207ENST00000468384 TXNDC2Q86VQ3 553 aa9.15□□□□□ -0.94
HMGB1-207ENST00000468384 NKTRP30414 1462 aaKnown RBP9.15□□□□□ -0.95
HMGB1-207ENST00000468384 BRWD3Q6RI45 1802 aa9.15□□□□□ -0.95
HMGB1-207ENST00000468384 KIDINS220Q9ULH0 1771 aa9.14□□□□□ -0.95
HMGB1-207ENST00000468384 P3H3Q8IVL6 736 aa9.14□□□□□ -0.95
HMGB1-207ENST00000468384 GPBP1L1Q9HC44 474 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-207ENST00000468384 MAST1Q9Y2H9 1570 aa9.14□□□□□ -0.95
HMGB1-207ENST00000468384 PZPP20742 1482 aa9.14□□□□□ -0.95
HMGB1-207ENST00000468384 LAPTM4AQ15012 233 aa9.13□□□□□ -0.95
HMGB1-207ENST00000468384 DMRTA1Q5VZB9 504 aa9.13□□□□□ -0.95
HMGB1-207ENST00000468384 CAMKK2Q96RR4 588 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms