RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 NEXMIFQ5QGS0 1516 aa8.42□□□□□ -1.06
USP39-213ENST00000467885 MED14O60244 1454 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 MYOM2P54296 1465 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 PIK3C2GO75747 1445 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 METP08581 1390 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 ZNF316A6NFI3 1004 aaPredicted RBP8.41□□□□□ -1.06
USP39-213ENST00000467885 STK26Q9P289 416 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 TRAK1Q9UPV9 953 aa8.41□□□□□ -1.06
USP39-213ENST00000467885 ADAMTS13Q76LX8 1427 aa8.4□□□□□ -1.06
USP39-213ENST00000467885 TESK2Q96S53 571 aa8.4□□□□□ -1.06
USP39-213ENST00000467885 ROCK2O75116 1388 aaKnown RBP8.39□□□□□ -1.07
USP39-213ENST00000467885 ABCC11Q96J66 1382 aa8.39□□□□□ -1.07
USP39-213ENST00000467885 KIF1BO60333 1816 aa8.39□□□□□ -1.07
USP39-213ENST00000467885 WAPLQ7Z5K2 1190 aa8.39□□□□□ -1.07
USP39-213ENST00000467885 AMOTL2Q9Y2J4 779 aa8.39□□□□□ -1.07
USP39-213ENST00000467885 UBR1Q8IWV7 1749 aa8.38□□□□□ -1.07
USP39-213ENST00000467885 CEP170BQ9Y4F5 1589 aaPredicted RBP8.38□□□□□ -1.07
USP39-213ENST00000467885 LMTK3Q96Q04 1460 aa8.38□□□□□ -1.07
USP39-213ENST00000467885 SCAF11Q99590 1463 aaKnown RBP8.38□□□□□ -1.07
USP39-213ENST00000467885 KDM5AP29375 1690 aaKnown RBP8.37□□□□□ -1.07
USP39-213ENST00000467885 KCNA6P17658 529 aa8.37□□□□□ -1.07
USP39-213ENST00000467885 RALGAPBQ86X10 1494 aa8.37□□□□□ -1.07
USP39-213ENST00000467885 PTPRUQ92729 1446 aa8.37□□□□□ -1.07
USP39-213ENST00000467885 LRPPRCP42704 1394 aaKnown RBP8.36□□□□□ -1.07
USP39-213ENST00000467885 ALKQ9UM73 1620 aa8.36□□□□□ -1.07
USP39-213ENST00000467885 PRAM1Q96QH2 718 aa8.36□□□□□ -1.07
USP39-213ENST00000467885 PHF12Q96QT6 1004 aa8.36□□□□□ -1.07
USP39-213ENST00000467885 NPHP4O75161 1426 aaPredicted RBP8.36□□□□□ -1.07
USP39-213ENST00000467885 USP47Q96K76 1375 aa8.35□□□□□ -1.07
USP39-213ENST00000467885 PAK3O75914 559 aaPredicted RBP8.35□□□□□ -1.07
USP39-213ENST00000467885 MNX1P50219 401 aaPredicted RBP8.35□□□□□ -1.07
USP39-213ENST00000467885 MYO3AQ8NEV4 1616 aa8.35□□□□□ -1.07
USP39-213ENST00000467885 YTHDC2Q9H6S0 1430 aaKnown RBP8.35□□□□□ -1.07
USP39-213ENST00000467885 PPLO60437 1756 aa8.35□□□□□ -1.07
USP39-213ENST00000467885 ADGRB1O14514 1584 aa8.35□□□□□ -1.07
USP39-213ENST00000467885 PIK3R4Q99570 1358 aa8.35□□□□□ -1.07
USP39-213ENST00000467885 MYO5BQ9ULV0 1848 aa8.34□□□□□ -1.07
USP39-213ENST00000467885 POGKQ9P215 609 aa8.34□□□□□ -1.07
USP39-213ENST00000467885 CENPJQ9HC77 1338 aaPredicted RBP8.33□□□□□ -1.08
USP39-213ENST00000467885 POTEB2H3BUK9 544 aa8.33□□□□□ -1.08
USP39-213ENST00000467885 SAFB2Q14151 953 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP39-213ENST00000467885 PUS7Q96PZ0 661 aaKnown RBP8.33□□□□□ -1.08
USP39-213ENST00000467885 IFT172Q9UG01 1749 aa8.33□□□□□ -1.08
USP39-213ENST00000467885 SETBP1Q9Y6X0 1596 aa8.33□□□□□ -1.08
USP39-213ENST00000467885 ROBO2Q9HCK4 1378 aa8.33□□□□□ -1.08
USP39-213ENST00000467885 PLEKHH1Q9ULM0 1364 aa8.33□□□□□ -1.08
USP39-213ENST00000467885 TRPM1Q7Z4N2 1603 aa8.32□□□□□ -1.08
USP39-213ENST00000467885 WASHC2AQ641Q2 1341 aa8.32□□□□□ -1.08
USP39-213ENST00000467885 PROSER2Q86WR7 435 aaPredicted RBP8.32□□□□□ -1.08
USP39-213ENST00000467885 RBM33Q96EV2 1170 aaKnown RBP8.32□□□□□ -1.08
USP39-213ENST00000467885 OTUD5Q96G74 571 aa8.32□□□□□ -1.08
USP39-213ENST00000467885 CDK19Q9BWU1 502 aa8.32□□□□□ -1.08
USP39-213ENST00000467885 TMF1P82094 1093 aa8.31□□□□□ -1.08
USP39-213ENST00000467885 NRXN3Q9Y4C0 1643 aa8.31□□□□□ -1.08
USP39-213ENST00000467885 ZNF142P52746 1687 aaPredicted RBP8.3□□□□□ -1.08
USP39-213ENST00000467885 KIF7Q2M1P5 1343 aa8.3□□□□□ -1.08
USP39-213ENST00000467885 MINK1Q8N4C8 1332 aaPredicted RBP8.3□□□□□ -1.08
USP39-213ENST00000467885 FAM135BQ49AJ0 1406 aa8.3□□□□□ -1.08
USP39-213ENST00000467885 ASXL1Q8IXJ9 1541 aa8.3□□□□□ -1.08
USP39-213ENST00000467885 WASLO00401 505 aaPredicted RBP8.3□□□□□ -1.08
USP39-213ENST00000467885 DDX10Q13206 875 aaKnown RBP8.3□□□□□ -1.08
USP39-213ENST00000467885 TECPR2O15040 1411 aa8.29□□□□□ -1.08
USP39-213ENST00000467885 KIAA1210Q9ULL0 1709 aa8.29□□□□□ -1.08
USP39-213ENST00000467885 PELP1Q8IZL8 1130 aaKnown RBP8.29□□□□□ -1.08
USP39-213ENST00000467885 CABP2Q9NPB3 220 aa8.29□□□□□ -1.08
USP39-213ENST00000467885 ZNF335Q9H4Z2 1342 aaPredicted RBP8.29□□□□□ -1.08
USP39-213ENST00000467885 CCDC7Q96M83 1385 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 DISP3Q9P2K9 1392 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 SBNO2Q9Y2G9 1366 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 PER1O15534 1290 aaPredicted RBP8.28□□□□□ -1.08
USP39-213ENST00000467885 CDCA8Q53HL2 280 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 SLC12A5Q9H2X9 1139 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 C19orf44Q9H6X5 657 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 PLSCR2Q9NRY7 297 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 EVC2Q86UK5 1308 aa8.28□□□□□ -1.08
USP39-213ENST00000467885 EIF3AQ14152 1382 aaKnown RBP8.27□□□□□ -1.09
USP39-213ENST00000467885 NUDT16Q96DE0 195 aaKnown RBP8.27□□□□□ -1.09
USP39-213ENST00000467885 STRCQ7RTU9 1775 aa8.27□□□□□ -1.09
USP39-213ENST00000467885 LAMC1P11047 1609 aa8.26□□□□□ -1.09
USP39-213ENST00000467885 DLC1Q96QB1 1528 aa8.26□□□□□ -1.09
USP39-213ENST00000467885 CARD14Q9BXL6 1004 aa8.26□□□□□ -1.09
USP39-213ENST00000467885 PANK3Q9H999 370 aa8.26□□□□□ -1.09
USP39-213ENST00000467885 CABP1Q9NZU7 370 aa8.26□□□□□ -1.09
USP39-213ENST00000467885 PLEKHG3A1L390 1219 aa8.25□□□□□ -1.09
USP39-213ENST00000467885 SRPK2P78362 688 aaKnown RBP8.25□□□□□ -1.09
USP39-213ENST00000467885 MS4A3Q96HJ5 214 aa8.25□□□□□ -1.09
USP39-213ENST00000467885 POLR3GLQ9BT43 218 aa8.25□□□□□ -1.09
USP39-213ENST00000467885 CCDC61Q9Y6R9 512 aa8.25□□□□□ -1.09
USP39-213ENST00000467885 SETD1AO15047 1707 aaKnown RBP8.25□□□□□ -1.09
USP39-213ENST00000467885 PRR36Q9H6K5 1346 aa8.25□□□□□ -1.09
USP39-213ENST00000467885 DIP2AQ14689 1571 aa8.24□□□□□ -1.09
USP39-213ENST00000467885 NCOA3Q9Y6Q9 1424 aa8.24□□□□□ -1.09
USP39-213ENST00000467885 NUTM2FA1L443 756 aa8.24□□□□□ -1.09
USP39-213ENST00000467885 IQGAP1P46940 1657 aa8.24□□□□□ -1.09
USP39-213ENST00000467885 TMEM94Q12767 1356 aa8.23□□□□□ -1.09
USP39-213ENST00000467885 PTCH1Q13635 1447 aa8.23□□□□□ -1.09
USP39-213ENST00000467885 DIEXFQ68CQ4 756 aaKnown RBP8.23□□□□□ -1.09
USP39-213ENST00000467885 ASTLQ6HA08 431 aaPredicted RBP8.23□□□□□ -1.09
USP39-213ENST00000467885 TMC1Q8TDI8 760 aa8.23□□□□□ -1.09
USP39-213ENST00000467885 ORAI2Q96SN7 254 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms