RNA–Protein interactions for RNA: ENST00000465282.5

USP39-211, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-211ENST00000465282 GPRASP1Q5JY77 1395 aa24.16■■□□□ 1.46
USP39-211ENST00000465282 ATF3P18847 181 aa24.15■■□□□ 1.46
USP39-211ENST00000465282 WAPLQ7Z5K2 1190 aa24.15■■□□□ 1.46
USP39-211ENST00000465282 POGKQ9P215 609 aa24.14■■□□□ 1.45
USP39-211ENST00000465282 PRAM1Q96QH2 718 aa24.13■■□□□ 1.45
USP39-211ENST00000465282 PLEKHH1Q9ULM0 1364 aa24.1■■□□□ 1.45
USP39-211ENST00000465282 CDC42BPGQ6DT37 1551 aa24.1■■□□□ 1.45
USP39-211ENST00000465282 SLAIN2Q9P270 581 aa24.08■■□□□ 1.45
USP39-211ENST00000465282 EIF3AQ14152 1382 aaKnown RBP24.07■■□□□ 1.44
USP39-211ENST00000465282 CARD11Q9BXL7 1154 aa24.07■■□□□ 1.44
USP39-211ENST00000465282 ADGRB2O60241 1585 aa24.07■■□□□ 1.44
USP39-211ENST00000465282 SAFB2Q14151 953 aaKnown RBP eCLIP24.03■■□□□ 1.44
USP39-211ENST00000465282 CENPJQ9HC77 1338 aaPredicted RBP24.03■■□□□ 1.44
USP39-211ENST00000465282 MST1RQ04912 1400 aa24.02■■□□□ 1.44
USP39-211ENST00000465282 FMN2Q9NZ56 1722 aa24.02■■□□□ 1.44
USP39-211ENST00000465282 PIP4K2BP78356 416 aa24.02■■□□□ 1.44
USP39-211ENST00000465282 QRICH2Q9H0J4 1663 aa24.02■■□□□ 1.44
USP39-211ENST00000465282 SCAF1Q9H7N4 1312 aaKnown RBP24■■□□□ 1.43
USP39-211ENST00000465282 ROBO1Q9Y6N7 1651 aa23.99■■□□□ 1.43
USP39-211ENST00000465282 MINK1Q8N4C8 1332 aaPredicted RBP23.98■■□□□ 1.43
USP39-211ENST00000465282 C1orf167Q5SNV9 1468 aa23.97■■□□□ 1.43
USP39-211ENST00000465282 WASLO00401 505 aaPredicted RBP23.96■■□□□ 1.43
USP39-211ENST00000465282 SBNO2Q9Y2G9 1366 aa23.95■■□□□ 1.42
USP39-211ENST00000465282 SLC24A1O60721 1099 aa23.95■■□□□ 1.42
USP39-211ENST00000465282 ANKARQ7Z5J8 1434 aa23.94■■□□□ 1.42
USP39-211ENST00000465282 HIRIP3Q9BW71 556 aaPredicted RBP23.94■■□□□ 1.42
USP39-211ENST00000465282 BRINP3Q76B58 766 aa23.92■■□□□ 1.42
USP39-211ENST00000465282 TULP4Q9NRJ4 1543 aa23.92■■□□□ 1.42
USP39-211ENST00000465282 RGPD8O14715 1765 aaPredicted RBP23.92■■□□□ 1.42
USP39-211ENST00000465282 USP47Q96K76 1375 aa23.91■■□□□ 1.42
USP39-211ENST00000465282 EVC2Q86UK5 1308 aa23.89■■□□□ 1.42
USP39-211ENST00000465282 CDK19Q9BWU1 502 aa23.89■■□□□ 1.41
USP39-211ENST00000465282 ITSN1Q15811 1721 aa23.89■■□□□ 1.41
USP39-211ENST00000465282 KIF1AQ12756 1690 aa23.89■■□□□ 1.41
USP39-211ENST00000465282 AHDC1Q5TGY3 1603 aaPredicted RBP23.88■■□□□ 1.41
USP39-211ENST00000465282 USP32Q8NFA0 1604 aa23.88■■□□□ 1.41
USP39-211ENST00000465282 ESCO1Q5FWF5 840 aa23.88■■□□□ 1.41
USP39-211ENST00000465282 NHSL1Q5SYE7 1610 aa23.88■■□□□ 1.41
USP39-211ENST00000465282 ST20-MTHFSA0A0A6YYL1 179 aa23.86■■□□□ 1.41
USP39-211ENST00000465282 NUTM2FA1L443 756 aa23.86■■□□□ 1.41
USP39-211ENST00000465282 ORAI2Q96SN7 254 aa23.86■■□□□ 1.41
USP39-211ENST00000465282 PHLPP1O60346 1717 aa23.86■■□□□ 1.41
USP39-211ENST00000465282 HSPA1LP34931 641 aa23.84■■□□□ 1.41
USP39-211ENST00000465282 NUDT16Q96DE0 195 aaKnown RBP23.84■■□□□ 1.41
USP39-211ENST00000465282 ATP7BP35670 1465 aa23.83■■□□□ 1.41
USP39-211ENST00000465282 SRPK2P78362 688 aaKnown RBP23.83■■□□□ 1.41
USP39-211ENST00000465282 EIF4G2P78344 907 aaKnown RBP eCLIP23.82■■□□□ 1.4
USP39-211ENST00000465282 PUS7Q96PZ0 661 aaKnown RBP23.82■■□□□ 1.4
USP39-211ENST00000465282 TESK2Q96S53 571 aa23.82■■□□□ 1.4
USP39-211ENST00000465282 PHF8Q9UPP1 1060 aa23.82■■□□□ 1.4
USP39-211ENST00000465282 CCDC61Q9Y6R9 512 aa23.82■■□□□ 1.4
USP39-211ENST00000465282 NPHP3Q7Z494 1330 aa23.82■■□□□ 1.4
USP39-211ENST00000465282 PRR36Q9H6K5 1346 aa23.82■■□□□ 1.4
USP39-211ENST00000465282 TOPAZ1Q8N9V7 1692 aa23.81■■□□□ 1.4
USP39-211ENST00000465282 COL16A1Q07092 1604 aaPredicted RBP23.8■■□□□ 1.4
USP39-211ENST00000465282 DISP3Q9P2K9 1392 aa23.79■■□□□ 1.4
USP39-211ENST00000465282 CABP2Q9NPB3 220 aa23.77■■□□□ 1.4
USP39-211ENST00000465282 SOS2Q07890 1332 aaPredicted RBP23.77■■□□□ 1.4
USP39-211ENST00000465282 ATAD2Q6PL18 1390 aa23.77■■□□□ 1.4
USP39-211ENST00000465282 FOXO3O43524 673 aa23.76■■□□□ 1.39
USP39-211ENST00000465282 TMF1P82094 1093 aa23.76■■□□□ 1.39
USP39-211ENST00000465282 PLEKHG3A1L390 1219 aa23.75■■□□□ 1.39
USP39-211ENST00000465282 ZEB1P37275 1124 aaPredicted RBP23.75■■□□□ 1.39
USP39-211ENST00000465282 CDCA8Q53HL2 280 aa23.75■■□□□ 1.39
USP39-211ENST00000465282 LRRC59Q96AG4 307 aaKnown RBP23.75■■□□□ 1.39
USP39-211ENST00000465282 PSME1Q06323 249 aa23.73■■□□□ 1.39
USP39-211ENST00000465282 PMFBP1Q8TBY8 1022 aa23.73■■□□□ 1.39
USP39-211ENST00000465282 PPIP5K1Q6PFW1 1433 aa23.73■■□□□ 1.39
USP39-211ENST00000465282 PXDNQ92626 1479 aa23.73■■□□□ 1.39
USP39-211ENST00000465282 NGDNQ8NEJ9 315 aaKnown RBP23.72■■□□□ 1.39
USP39-211ENST00000465282 POLR3AO14802 1390 aaPredicted RBP23.72■■□□□ 1.39
USP39-211ENST00000465282 HSPA5P11021 654 aaKnown RBP23.71■■□□□ 1.39
USP39-211ENST00000465282 DDX17Q92841 729 aaKnown RBP23.71■■□□□ 1.39
USP39-211ENST00000465282 SHPRHQ149N8 1683 aa23.7■■□□□ 1.39
USP39-211ENST00000465282 JCADQ9P266 1359 aa23.7■■□□□ 1.38
USP39-211ENST00000465282 KRT28Q7Z3Y7 464 aa23.7■■□□□ 1.38
USP39-211ENST00000465282 NINLQ9Y2I6 1382 aa23.68■■□□□ 1.38
USP39-211ENST00000465282 ACEP12821 1306 aa23.68■■□□□ 1.38
USP39-211ENST00000465282 CABP1Q9NZU7 370 aa23.68■■□□□ 1.38
USP39-211ENST00000465282 SBNO1A3KN83 1393 aa23.67■■□□□ 1.38
USP39-211ENST00000465282 BRD4O60885 1362 aaPredicted RBP23.66■■□□□ 1.38
USP39-211ENST00000465282 ZNF692Q9BU19 519 aaPredicted RBP23.66■■□□□ 1.38
USP39-211ENST00000465282 AKAP12Q02952 1782 aa23.65■■□□□ 1.38
USP39-211ENST00000465282 TRPM3Q9HCF6 1732 aaPredicted RBP23.64■■□□□ 1.38
USP39-211ENST00000465282 SPATA31A3Q5VYP0 1347 aa23.63■■□□□ 1.37
USP39-211ENST00000465282 XPCQ01831 940 aaPredicted RBP23.63■■□□□ 1.37
USP39-211ENST00000465282 SPATA31A6Q5VVP1 1343 aa23.62■■□□□ 1.37
USP39-211ENST00000465282 COL22A1Q8NFW1 1626 aaPredicted RBP23.62■■□□□ 1.37
USP39-211ENST00000465282 TNS3Q68CZ2 1445 aa23.61■■□□□ 1.37
USP39-211ENST00000465282 ILDR2Q71H61 639 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 TMC1Q8TDI8 760 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 TERF2IPQ9NYB0 399 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 ARHGEF10O15013 1369 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 PNPLA6Q8IY17 1366 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 ALS2Q96Q42 1657 aa23.6■■□□□ 1.37
USP39-211ENST00000465282 CPSF1Q10570 1443 aaKnown RBP23.59■■□□□ 1.37
USP39-211ENST00000465282 SLC12A5Q9H2X9 1139 aa23.58■■□□□ 1.37
USP39-211ENST00000465282 MON2Q7Z3U7 1717 aa23.58■■□□□ 1.37
USP39-211ENST00000465282 USP6P35125 1406 aa23.58■■□□□ 1.36
USP39-211ENST00000465282 SOCS7O14512 581 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms