RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 MINK1Q8N4C8 1332 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-204ENST00000463837 TSR1Q2NL82 804 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-204ENST00000463837 SASS6Q6UVJ0 657 aa23.03■■□□□ 1.28
CCDC88B-204ENST00000463837 IFIT2P09913 472 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-204ENST00000463837 BICD2Q8TD16 824 aa23.03■■□□□ 1.28
CCDC88B-204ENST00000463837 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
CCDC88B-204ENST00000463837 ERC2O15083 957 aa23.02■■□□□ 1.28
CCDC88B-204ENST00000463837 CIZ1Q9ULV3 898 aaPredicted RBP23.01■■□□□ 1.27
CCDC88B-204ENST00000463837 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.01■■□□□ 1.27
CCDC88B-204ENST00000463837 PES1O00541 588 aaKnown RBP23■■□□□ 1.27
CCDC88B-204ENST00000463837 CCDC70Q6NSX1 233 aa23■■□□□ 1.27
CCDC88B-204ENST00000463837 CWC22Q9HCG8 908 aaKnown RBP23■■□□□ 1.27
CCDC88B-204ENST00000463837 HMGN5P82970 282 aaKnown RBP23■■□□□ 1.27
CCDC88B-204ENST00000463837 TPD52L1Q16890 204 aaPredicted RBP23■■□□□ 1.27
CCDC88B-204ENST00000463837 C1orf141Q5JVX7 400 aa23■■□□□ 1.27
CCDC88B-204ENST00000463837 SETQ01105 290 aaPredicted RBP23■■□□□ 1.27
CCDC88B-204ENST00000463837 NEXNQ0ZGT2 675 aa23■■□□□ 1.27
CCDC88B-204ENST00000463837 WDR63Q8IWG1 891 aa22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 RNF214Q8ND24 703 aa22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 VPS37CA5D8V6 355 aaPredicted RBP22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 EVA1CP58658 441 aa22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 C9orf78Q9NZ63 289 aaPredicted RBP22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 HOOK1Q9UJC3 728 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-204ENST00000463837 PKNOX2Q96KN3 472 aa22.98■■□□□ 1.27
CCDC88B-204ENST00000463837 ARGLU1Q9NWB6 273 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-204ENST00000463837 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-204ENST00000463837 SUPT6HQ7KZ85 1726 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-204ENST00000463837 TEFQ10587 303 aa22.98■■□□□ 1.27
CCDC88B-204ENST00000463837 MAP3K1Q13233 1512 aa22.97■■□□□ 1.27
CCDC88B-204ENST00000463837 PLEKHH2Q8IVE3 1493 aa22.97■■□□□ 1.27
CCDC88B-204ENST00000463837 MTHFSP49914 203 aa22.97■■□□□ 1.27
CCDC88B-204ENST00000463837 FKBP5Q13451 457 aaPredicted RBP22.97■■□□□ 1.27
CCDC88B-204ENST00000463837 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.97■■□□□ 1.27
CCDC88B-204ENST00000463837 CAVIN1Q6NZI2 390 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 HECW1Q76N89 1606 aa22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 HOMER1Q86YM7 354 aa22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 TSPY26PQ9H489 355 aa22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 IFT57Q9NWB7 429 aa22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 AQRO60306 1485 aaKnown RBP eCLIP22.96■■□□□ 1.27
CCDC88B-204ENST00000463837 CCDC73Q6ZRK6 1079 aa22.95■■□□□ 1.27
CCDC88B-204ENST00000463837 MSH5O43196 834 aa22.95■■□□□ 1.26
CCDC88B-204ENST00000463837 SYNE3Q6ZMZ3 975 aa22.95■■□□□ 1.26
CCDC88B-204ENST00000463837 GRPEL1Q9HAV7 217 aa22.95■■□□□ 1.26
CCDC88B-204ENST00000463837 CCDC184Q52MB2 194 aa22.95■■□□□ 1.26
CCDC88B-204ENST00000463837 PDE4CQ08493 712 aa22.94■■□□□ 1.26
CCDC88B-204ENST00000463837 ERBINQ96RT1 1412 aa22.94■■□□□ 1.26
CCDC88B-204ENST00000463837 DDX58O95786 925 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-204ENST00000463837 TRIM29Q14134 588 aa22.94■■□□□ 1.26
CCDC88B-204ENST00000463837 NAIPQ13075 1403 aa22.93■■□□□ 1.26
CCDC88B-204ENST00000463837 GRIN2BQ13224 1484 aa22.93■■□□□ 1.26
CCDC88B-204ENST00000463837 AKAP17AQ02040 695 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-204ENST00000463837 G3BP1Q13283 466 aaKnown RBP eCLIP22.93■■□□□ 1.26
CCDC88B-204ENST00000463837 NECTIN2Q92692 538 aa22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 NAT10Q9H0A0 1025 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 BCAR3O75815 825 aa22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 DAPK1P53355 1430 aa22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 PSMA5P28066 241 aa22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 ANKRD20A12PQ8NF67 263 aa22.92■■□□□ 1.26
CCDC88B-204ENST00000463837 K7ELQ4 463 aaPredicted RBP22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 EXOSC9Q06265 439 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 C9orf84Q5VXU9 1444 aa22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 MCM4P33991 863 aa22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 TSPYL4Q9UJ04 414 aa22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 CPLX1O14810 134 aa22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 GNAI3P08754 354 aa22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 BCL11BQ9C0K0 894 aaPredicted RBP22.91■■□□□ 1.26
CCDC88B-204ENST00000463837 EIF2S2P20042 333 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-204ENST00000463837 MVPQ14764 893 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-204ENST00000463837 FAM69CQ0P6D2 419 aa22.9■■□□□ 1.26
CCDC88B-204ENST00000463837 FBXW7Q969H0 707 aa22.89■■□□□ 1.26
CCDC88B-204ENST00000463837 PRPF40AO75400 957 aaKnown RBP22.89■■□□□ 1.25
CCDC88B-204ENST00000463837 TTC5Q8N0Z6 440 aa22.89■■□□□ 1.25
CCDC88B-204ENST00000463837 IPO7O95373 1038 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 CNTROBQ8N137 903 aa22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 NCBP3Q53F19 620 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 GGNBP2Q9H3C7 697 aa22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 MNS1Q8NEH6 495 aa22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 RBM10P98175 930 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-204ENST00000463837 PDCP20941 246 aa22.87■■□□□ 1.25
CCDC88B-204ENST00000463837 NBPF1Q3BBV0 1214 aa22.87■■□□□ 1.25
CCDC88B-204ENST00000463837 ACBD3Q9H3P7 528 aa22.87■■□□□ 1.25
CCDC88B-204ENST00000463837 RRP9O43818 475 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-204ENST00000463837 NEK4P51957 841 aa22.86■■□□□ 1.25
CCDC88B-204ENST00000463837 UBTFL1P0CB47 393 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-204ENST00000463837 SLFN5Q08AF3 891 aa22.86■■□□□ 1.25
CCDC88B-204ENST00000463837 ARHGAP5Q13017 1502 aa22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 NOB1Q9ULX3 412 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 TROQ12816 1431 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 HMOX1P09601 288 aa22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 PSME1Q06323 249 aa22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 DHX8Q14562 1220 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 ZNF428Q96B54 188 aa22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 ATF7IPQ6VMQ6 1270 aa22.85■■□□□ 1.25
CCDC88B-204ENST00000463837 ESPNB1AK53 854 aa22.84■■□□□ 1.25
CCDC88B-204ENST00000463837 TRDNQ13061 729 aa22.84■■□□□ 1.25
CCDC88B-204ENST00000463837 SYNJ2O15056 1496 aa22.84■■□□□ 1.25
CCDC88B-204ENST00000463837 CCDC47Q96A33 483 aaKnown RBP22.83■■□□□ 1.25
CCDC88B-204ENST00000463837 HIP1O00291 1037 aa22.83■■□□□ 1.24
CCDC88B-204ENST00000463837 CCP110O43303 1012 aa22.82■■□□□ 1.24
CCDC88B-204ENST00000463837 FOSBP53539 338 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms