RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 NBPF8Q3BBV2 869 aa10.88□□□□□ -0.67
USP4-207ENST00000462673 ROBO2Q9HCK4 1378 aa10.88□□□□□ -0.67
USP4-207ENST00000462673 DCCP43146 1447 aa10.87□□□□□ -0.67
USP4-207ENST00000462673 CENPJQ9HC77 1338 aaPredicted RBP10.86□□□□□ -0.67
USP4-207ENST00000462673 DLC1Q96QB1 1528 aa10.86□□□□□ -0.67
USP4-207ENST00000462673 SAFB2Q14151 953 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP4-207ENST00000462673 CDCA8Q53HL2 280 aa10.85□□□□□ -0.67
USP4-207ENST00000462673 EVC2Q86UK5 1308 aa10.84□□□□□ -0.67
USP4-207ENST00000462673 ADGRL3Q9HAR2 1447 aa10.84□□□□□ -0.67
USP4-207ENST00000462673 XRN1Q8IZH2 1706 aaKnown RBP10.84□□□□□ -0.67
USP4-207ENST00000462673 WASLO00401 505 aaPredicted RBP10.84□□□□□ -0.67
USP4-207ENST00000462673 GPRASP1Q5JY77 1395 aa10.84□□□□□ -0.67
USP4-207ENST00000462673 ADGRB1O14514 1584 aa10.84□□□□□ -0.67
USP4-207ENST00000462673 STRCP1A6NGW2 1772 aa10.84□□□□□ -0.67
USP4-207ENST00000462673 SETD1AO15047 1707 aaKnown RBP10.84□□□□□ -0.67
USP4-207ENST00000462673 ADRA2BP18089 450 aa10.83□□□□□ -0.68
USP4-207ENST00000462673 EIF4G2P78344 907 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP4-207ENST00000462673 ESCO1Q5FWF5 840 aa10.83□□□□□ -0.68
USP4-207ENST00000462673 MINK1Q8N4C8 1332 aaPredicted RBP10.83□□□□□ -0.68
USP4-207ENST00000462673 RALGAPBQ86X10 1494 aa10.82□□□□□ -0.68
USP4-207ENST00000462673 KNDC1Q76NI1 1749 aa10.82□□□□□ -0.68
USP4-207ENST00000462673 SRPK2P78362 688 aaKnown RBP10.82□□□□□ -0.68
USP4-207ENST00000462673 PSME1Q06323 249 aa10.82□□□□□ -0.68
USP4-207ENST00000462673 PUS7Q96PZ0 661 aaKnown RBP10.82□□□□□ -0.68
USP4-207ENST00000462673 CDK19Q9BWU1 502 aa10.82□□□□□ -0.68
USP4-207ENST00000462673 TRPM1Q7Z4N2 1603 aa10.81□□□□□ -0.68
USP4-207ENST00000462673 TMF1P82094 1093 aa10.81□□□□□ -0.68
USP4-207ENST00000462673 HIRIP3Q9BW71 556 aaPredicted RBP10.81□□□□□ -0.68
USP4-207ENST00000462673 CCDC61Q9Y6R9 512 aa10.81□□□□□ -0.68
USP4-207ENST00000462673 LRRC59Q96AG4 307 aaKnown RBP10.8□□□□□ -0.68
USP4-207ENST00000462673 ASXL1Q8IXJ9 1541 aa10.79□□□□□ -0.68
USP4-207ENST00000462673 PLEKHH1Q9ULM0 1364 aa10.79□□□□□ -0.68
USP4-207ENST00000462673 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.79□□□□□ -0.68
USP4-207ENST00000462673 ST20-MTHFSA0A0A6YYL1 179 aa10.79□□□□□ -0.68
USP4-207ENST00000462673 PIAS4Q8N2W9 510 aaPredicted RBP10.79□□□□□ -0.68
USP4-207ENST00000462673 NUDT16Q96DE0 195 aaKnown RBP10.79□□□□□ -0.68
USP4-207ENST00000462673 NPHP3Q7Z494 1330 aa10.79□□□□□ -0.68
USP4-207ENST00000462673 NUTM2FA1L443 756 aa10.78□□□□□ -0.68
USP4-207ENST00000462673 BRINP3Q76B58 766 aa10.78□□□□□ -0.68
USP4-207ENST00000462673 ILDR1Q86SU0 546 aaPredicted RBP10.78□□□□□ -0.68
USP4-207ENST00000462673 NGDNQ8NEJ9 315 aaKnown RBP10.78□□□□□ -0.68
USP4-207ENST00000462673 ZNF692Q9BU19 519 aaPredicted RBP10.78□□□□□ -0.68
USP4-207ENST00000462673 PHF8Q9UPP1 1060 aa10.78□□□□□ -0.68
USP4-207ENST00000462673 SBNO2Q9Y2G9 1366 aa10.77□□□□□ -0.68
USP4-207ENST00000462673 ANKARQ7Z5J8 1434 aa10.77□□□□□ -0.68
USP4-207ENST00000462673 C1orf167Q5SNV9 1468 aa10.77□□□□□ -0.69
USP4-207ENST00000462673 YTHDC1Q96MU7 727 aaKnown RBP10.77□□□□□ -0.69
USP4-207ENST00000462673 XIRP1Q702N8 1843 aaKnown RBP10.77□□□□□ -0.69
USP4-207ENST00000462673 USP47Q96K76 1375 aa10.77□□□□□ -0.69
USP4-207ENST00000462673 MST1RQ04912 1400 aa10.76□□□□□ -0.69
USP4-207ENST00000462673 ORAI2Q96SN7 254 aa10.76□□□□□ -0.69
USP4-207ENST00000462673 CDC42BPGQ6DT37 1551 aa10.76□□□□□ -0.69
USP4-207ENST00000462673 FOXO3O43524 673 aa10.75□□□□□ -0.69
USP4-207ENST00000462673 ATAD2Q6PL18 1390 aa10.75□□□□□ -0.69
USP4-207ENST00000462673 PLEKHG3A1L390 1219 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 MSH5O43196 834 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 HSPA1LP34931 641 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 KRT28Q7Z3Y7 464 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 CABP2Q9NPB3 220 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 TERF2IPQ9NYB0 399 aa10.74□□□□□ -0.69
USP4-207ENST00000462673 ARHGEF28Q8N1W1 1705 aaKnown RBP10.74□□□□□ -0.69
USP4-207ENST00000462673 NALCNQ8IZF0 1738 aa10.73□□□□□ -0.69
USP4-207ENST00000462673 HDGFL2Q7Z4V5 671 aaPredicted RBP10.73□□□□□ -0.69
USP4-207ENST00000462673 PMFBP1Q8TBY8 1022 aa10.73□□□□□ -0.69
USP4-207ENST00000462673 TMC1Q8TDI8 760 aa10.73□□□□□ -0.69
USP4-207ENST00000462673 ADGRB2O60241 1585 aa10.73□□□□□ -0.69
USP4-207ENST00000462673 CABP1Q9NZU7 370 aa10.72□□□□□ -0.69
USP4-207ENST00000462673 BRD4O60885 1362 aaPredicted RBP10.72□□□□□ -0.69
USP4-207ENST00000462673 NINLQ9Y2I6 1382 aa10.72□□□□□ -0.69
USP4-207ENST00000462673 TULP4Q9NRJ4 1543 aa10.72□□□□□ -0.69
USP4-207ENST00000462673 PAK3O75914 559 aaPredicted RBP10.71□□□□□ -0.69
USP4-207ENST00000462673 HSPA5P11021 654 aaKnown RBP10.71□□□□□ -0.69
USP4-207ENST00000462673 MIER1Q8N108 512 aa10.71□□□□□ -0.69
USP4-207ENST00000462673 TESK2Q96S53 571 aa10.71□□□□□ -0.69
USP4-207ENST00000462673 ROBO1Q9Y6N7 1651 aa10.7□□□□□ -0.7
USP4-207ENST00000462673 JCADQ9P266 1359 aa10.7□□□□□ -0.7
USP4-207ENST00000462673 ACEP12821 1306 aa10.7□□□□□ -0.7
USP4-207ENST00000462673 SOS2Q07890 1332 aaPredicted RBP10.7□□□□□ -0.7
USP4-207ENST00000462673 QRICH2Q9H0J4 1663 aa10.69□□□□□ -0.7
USP4-207ENST00000462673 PPIP5K1Q6PFW1 1433 aa10.69□□□□□ -0.7
USP4-207ENST00000462673 SPATA31A6Q5VVP1 1343 aa10.69□□□□□ -0.7
USP4-207ENST00000462673 HAP1P54257 671 aaPredicted RBP10.69□□□□□ -0.7
USP4-207ENST00000462673 LMOD2Q6P5Q4 547 aa10.69□□□□□ -0.7
USP4-207ENST00000462673 FMN2Q9NZ56 1722 aa10.69□□□□□ -0.7
USP4-207ENST00000462673 KIF1AQ12756 1690 aa10.68□□□□□ -0.7
USP4-207ENST00000462673 SBNO1A3KN83 1393 aa10.67□□□□□ -0.7
USP4-207ENST00000462673 ARHGEF10O15013 1369 aa10.67□□□□□ -0.7
USP4-207ENST00000462673 PRR36Q9H6K5 1346 aa10.67□□□□□ -0.7
USP4-207ENST00000462673 NLRP13Q86W25 1043 aa10.67□□□□□ -0.7
USP4-207ENST00000462673 POLR3GLQ9BT43 218 aa10.67□□□□□ -0.7
USP4-207ENST00000462673 POLR3AO14802 1390 aaPredicted RBP10.66□□□□□ -0.7
USP4-207ENST00000462673 AHDC1Q5TGY3 1603 aaPredicted RBP10.66□□□□□ -0.7
USP4-207ENST00000462673 SPATA31A3Q5VYP0 1347 aa10.66□□□□□ -0.7
USP4-207ENST00000462673 MEX3CQ5U5Q3 659 aaKnown RBP10.66□□□□□ -0.7
USP4-207ENST00000462673 ABTB2Q8N961 1025 aa10.66□□□□□ -0.7
USP4-207ENST00000462673 SLC12A5Q9H2X9 1139 aa10.66□□□□□ -0.7
USP4-207ENST00000462673 ITSN1Q15811 1721 aa10.66□□□□□ -0.7
USP4-207ENST00000462673 TTC21AQ8NDW8 1320 aa10.65□□□□□ -0.7
USP4-207ENST00000462673 PHLPP1O60346 1717 aa10.65□□□□□ -0.7
USP4-207ENST00000462673 XPCQ01831 940 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms