RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SIRT1Q96EB6 747 aa32.72■■■□□ 2.83
CCDC28B-203ENST00000461819 ROBO1Q9Y6N7 1651 aa32.72■■■□□ 2.83
CCDC28B-203ENST00000461819 PRAM1Q96QH2 718 aa32.7■■■□□ 2.83
CCDC28B-203ENST00000461819 SLAIN2Q9P270 581 aa32.7■■■□□ 2.83
CCDC28B-203ENST00000461819 CDC42BPGQ6DT37 1551 aa32.7■■■□□ 2.82
CCDC28B-203ENST00000461819 POGKQ9P215 609 aa32.69■■■□□ 2.82
CCDC28B-203ENST00000461819 SAFB2Q14151 953 aaKnown RBP eCLIP32.67■■■□□ 2.82
CCDC28B-203ENST00000461819 NBPF8Q3BBV2 869 aa32.67■■■□□ 2.82
CCDC28B-203ENST00000461819 ROCK2O75116 1388 aaKnown RBP32.67■■■□□ 2.82
CCDC28B-203ENST00000461819 MST1RQ04912 1400 aa32.64■■■□□ 2.82
CCDC28B-203ENST00000461819 RALGAPBQ86X10 1494 aa32.61■■■□□ 2.81
CCDC28B-203ENST00000461819 FMN2Q9NZ56 1722 aa32.61■■■□□ 2.81
CCDC28B-203ENST00000461819 TIMELESSQ9UNS1 1208 aa32.6■■■□□ 2.81
CCDC28B-203ENST00000461819 ADGRB2O60241 1585 aa32.59■■■□□ 2.81
CCDC28B-203ENST00000461819 QRICH2Q9H0J4 1663 aa32.56■■■□□ 2.8
CCDC28B-203ENST00000461819 C1orf167Q5SNV9 1468 aa32.55■■■□□ 2.8
CCDC28B-203ENST00000461819 HSPA1LP34931 641 aa32.55■■■□□ 2.8
CCDC28B-203ENST00000461819 MINK1Q8N4C8 1332 aaPredicted RBP32.54■■■□□ 2.8
CCDC28B-203ENST00000461819 GPRASP1Q5JY77 1395 aa32.54■■■□□ 2.8
CCDC28B-203ENST00000461819 PHLPP1O60346 1717 aa32.54■■■□□ 2.8
CCDC28B-203ENST00000461819 HIRIP3Q9BW71 556 aaPredicted RBP32.51■■■□□ 2.79
CCDC28B-203ENST00000461819 EIF3AQ14152 1382 aaKnown RBP32.5■■■□□ 2.79
CCDC28B-203ENST00000461819 BRINP3Q76B58 766 aa32.5■■■□□ 2.79
CCDC28B-203ENST00000461819 CARD11Q9BXL7 1154 aa32.5■■■□□ 2.79
CCDC28B-203ENST00000461819 RGPD8O14715 1765 aaPredicted RBP32.5■■■□□ 2.79
CCDC28B-203ENST00000461819 NUTM2FA1L443 756 aa32.49■■■□□ 2.79
CCDC28B-203ENST00000461819 CENPJQ9HC77 1338 aaPredicted RBP32.49■■■□□ 2.79
CCDC28B-203ENST00000461819 NHSL1Q5SYE7 1610 aa32.47■■■□□ 2.79
CCDC28B-203ENST00000461819 AHDC1Q5TGY3 1603 aaPredicted RBP32.47■■■□□ 2.79
CCDC28B-203ENST00000461819 USP32Q8NFA0 1604 aa32.42■■■□□ 2.78
CCDC28B-203ENST00000461819 ORAI2Q96SN7 254 aa32.42■■■□□ 2.78
CCDC28B-203ENST00000461819 TULP4Q9NRJ4 1543 aa32.41■■■□□ 2.78
CCDC28B-203ENST00000461819 COL16A1Q07092 1604 aaPredicted RBP32.41■■■□□ 2.78
CCDC28B-203ENST00000461819 KIF1AQ12756 1690 aa32.41■■■□□ 2.78
CCDC28B-203ENST00000461819 ESCO1Q5FWF5 840 aa32.41■■■□□ 2.78
CCDC28B-203ENST00000461819 WASLO00401 505 aaPredicted RBP32.4■■■□□ 2.78
CCDC28B-203ENST00000461819 ANKARQ7Z5J8 1434 aa32.4■■■□□ 2.78
CCDC28B-203ENST00000461819 ITSN1Q15811 1721 aa32.38■■■□□ 2.77
CCDC28B-203ENST00000461819 DDX17Q92841 729 aaKnown RBP32.33■■■□□ 2.77
CCDC28B-203ENST00000461819 CDK19Q9BWU1 502 aa32.33■■■□□ 2.77
CCDC28B-203ENST00000461819 ATP7BP35670 1465 aa32.3■■■□□ 2.76
CCDC28B-203ENST00000461819 PRR36Q9H6K5 1346 aa32.29■■■□□ 2.76
CCDC28B-203ENST00000461819 PHF8Q9UPP1 1060 aa32.29■■■□□ 2.76
CCDC28B-203ENST00000461819 TOPAZ1Q8N9V7 1692 aa32.29■■■□□ 2.76
CCDC28B-203ENST00000461819 NPHP3Q7Z494 1330 aa32.28■■■□□ 2.76
CCDC28B-203ENST00000461819 SRPK2P78362 688 aaKnown RBP32.28■■■□□ 2.76
CCDC28B-203ENST00000461819 EVC2Q86UK5 1308 aa32.26■■■□□ 2.76
CCDC28B-203ENST00000461819 FOXO3O43524 673 aa32.26■■■□□ 2.75
CCDC28B-203ENST00000461819 USP47Q96K76 1375 aa32.26■■■□□ 2.75
CCDC28B-203ENST00000461819 SBNO2Q9Y2G9 1366 aa32.26■■■□□ 2.75
CCDC28B-203ENST00000461819 SHPRHQ149N8 1683 aa32.25■■■□□ 2.75
CCDC28B-203ENST00000461819 NUDT16Q96DE0 195 aaKnown RBP32.25■■■□□ 2.75
CCDC28B-203ENST00000461819 JCADQ9P266 1359 aa32.24■■■□□ 2.75
CCDC28B-203ENST00000461819 PMFBP1Q8TBY8 1022 aa32.23■■■□□ 2.75
CCDC28B-203ENST00000461819 PXDNQ92626 1479 aa32.23■■■□□ 2.75
CCDC28B-203ENST00000461819 CABP2Q9NPB3 220 aa32.22■■■□□ 2.75
CCDC28B-203ENST00000461819 SOS2Q07890 1332 aaPredicted RBP32.22■■■□□ 2.75
CCDC28B-203ENST00000461819 ST20-MTHFSA0A0A6YYL1 179 aa32.2■■■□□ 2.75
CCDC28B-203ENST00000461819 XPCQ01831 940 aaPredicted RBP32.2■■■□□ 2.75
CCDC28B-203ENST00000461819 LRRC59Q96AG4 307 aaKnown RBP32.2■■■□□ 2.75
CCDC28B-203ENST00000461819 CCDC61Q9Y6R9 512 aa32.17■■■□□ 2.74
CCDC28B-203ENST00000461819 PPIP5K1Q6PFW1 1433 aa32.16■■■□□ 2.74
CCDC28B-203ENST00000461819 MED1Q15648 1581 aaPredicted RBP32.15■■■□□ 2.74
CCDC28B-203ENST00000461819 PSME1Q06323 249 aa32.15■■■□□ 2.74
CCDC28B-203ENST00000461819 NGDNQ8NEJ9 315 aaKnown RBP32.15■■■□□ 2.74
CCDC28B-203ENST00000461819 KRT28Q7Z3Y7 464 aa32.14■■■□□ 2.74
CCDC28B-203ENST00000461819 PNPLA6Q8IY17 1366 aa32.11■■■□□ 2.73
CCDC28B-203ENST00000461819 TESK2Q96S53 571 aa32.11■■■□□ 2.73
CCDC28B-203ENST00000461819 TRPM3Q9HCF6 1732 aaPredicted RBP32.11■■■□□ 2.73
CCDC28B-203ENST00000461819 ATAD2Q6PL18 1390 aa32.1■■■□□ 2.73
CCDC28B-203ENST00000461819 SLC24A1O60721 1099 aa32.09■■■□□ 2.73
CCDC28B-203ENST00000461819 SPATA31A6Q5VVP1 1343 aa32.08■■■□□ 2.73
CCDC28B-203ENST00000461819 COL22A1Q8NFW1 1626 aaPredicted RBP32.08■■■□□ 2.73
CCDC28B-203ENST00000461819 PLEKHG3A1L390 1219 aa32.07■■■□□ 2.72
CCDC28B-203ENST00000461819 TNS3Q68CZ2 1445 aa32.07■■■□□ 2.72
CCDC28B-203ENST00000461819 POLR3AO14802 1390 aaPredicted RBP32.07■■■□□ 2.72
CCDC28B-203ENST00000461819 ACEP12821 1306 aa32.06■■■□□ 2.72
CCDC28B-203ENST00000461819 SBNO1A3KN83 1393 aa32.06■■■□□ 2.72
CCDC28B-203ENST00000461819 SPATA31A3Q5VYP0 1347 aa32.04■■■□□ 2.72
CCDC28B-203ENST00000461819 EIF4G2P78344 907 aaKnown RBP eCLIP32.04■■■□□ 2.72
CCDC28B-203ENST00000461819 CABP1Q9NZU7 370 aa32.04■■■□□ 2.72
CCDC28B-203ENST00000461819 TMF1P82094 1093 aa32.03■■■□□ 2.72
CCDC28B-203ENST00000461819 ALS2Q96Q42 1657 aa32.02■■■□□ 2.72
CCDC28B-203ENST00000461819 AKAP12Q02952 1782 aa32.02■■■□□ 2.72
CCDC28B-203ENST00000461819 LRP6O75581 1613 aa32.01■■■□□ 2.72
CCDC28B-203ENST00000461819 NUTM2BA6NNL0 878 aaPredicted RBP32.01■■■□□ 2.71
CCDC28B-203ENST00000461819 NUTM2EB1AL46 878 aaPredicted RBP32.01■■■□□ 2.71
CCDC28B-203ENST00000461819 LMOD2Q6P5Q4 547 aa32.01■■■□□ 2.71
CCDC28B-203ENST00000461819 NUTM2AQ8IVF1 878 aaPredicted RBP32.01■■■□□ 2.71
CCDC28B-203ENST00000461819 DISP3Q9P2K9 1392 aa32.01■■■□□ 2.71
CCDC28B-203ENST00000461819 PAK3O75914 559 aaPredicted RBP31.99■■■□□ 2.71
CCDC28B-203ENST00000461819 ARHGEF10O15013 1369 aa31.98■■■□□ 2.71
CCDC28B-203ENST00000461819 HSPA5P11021 654 aaKnown RBP31.98■■■□□ 2.71
CCDC28B-203ENST00000461819 MEX3CQ5U5Q3 659 aaKnown RBP31.97■■■□□ 2.71
CCDC28B-203ENST00000461819 PUS7Q96PZ0 661 aaKnown RBP31.97■■■□□ 2.71
CCDC28B-203ENST00000461819 TMC1Q8TDI8 760 aa31.96■■■□□ 2.71
CCDC28B-203ENST00000461819 ABCA3Q99758 1704 aa31.95■■■□□ 2.7
CCDC28B-203ENST00000461819 PHF23Q9BUL5 403 aaPredicted RBP31.94■■■□□ 2.7
CCDC28B-203ENST00000461819 USP6P35125 1406 aa31.93■■■□□ 2.7
CCDC28B-203ENST00000461819 MON2Q7Z3U7 1717 aa31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms