RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 USP21Q9UK80 565 aa21.6■■□□□ 1.05
LYSMD3-202ENST00000453259 PPLO60437 1756 aa21.59■■□□□ 1.05
LYSMD3-202ENST00000453259 ORAI2Q96SN7 254 aa21.59■■□□□ 1.05
LYSMD3-202ENST00000453259 MYOM2P54296 1465 aa21.58■■□□□ 1.04
LYSMD3-202ENST00000453259 ATRNO75882 1429 aa21.57■■□□□ 1.04
LYSMD3-202ENST00000453259 LRPPRCP42704 1394 aaKnown RBP21.57■■□□□ 1.04
LYSMD3-202ENST00000453259 TECPR2O15040 1411 aa21.55■■□□□ 1.04
LYSMD3-202ENST00000453259 PXDNQ92626 1479 aa21.54■■□□□ 1.04
LYSMD3-202ENST00000453259 CCDC125Q86Z20 511 aa21.54■■□□□ 1.04
LYSMD3-202ENST00000453259 SLC4A1APQ9BWU0 796 aaKnown RBP21.54■■□□□ 1.04
LYSMD3-202ENST00000453259 MARF1Q9Y4F3 1742 aaKnown RBP21.51■■□□□ 1.03
LYSMD3-202ENST00000453259 ANKRD30BQ9BXX2 1392 aa21.5■■□□□ 1.03
LYSMD3-202ENST00000453259 ESCO1Q5FWF5 840 aa21.5■■□□□ 1.03
LYSMD3-202ENST00000453259 BCL9LQ86UU0 1499 aa21.49■■□□□ 1.03
LYSMD3-202ENST00000453259 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.49■■□□□ 1.03
LYSMD3-202ENST00000453259 CCDC144AA2RUR9 1427 aa21.48■■□□□ 1.03
LYSMD3-202ENST00000453259 ABCC11Q96J66 1382 aa21.48■■□□□ 1.03
LYSMD3-202ENST00000453259 KNDC1Q76NI1 1749 aa21.47■■□□□ 1.03
LYSMD3-202ENST00000453259 PPARGC1BQ86YN6 1023 aaKnown RBP21.47■■□□□ 1.03
LYSMD3-202ENST00000453259 KIF1AQ12756 1690 aa21.47■■□□□ 1.03
LYSMD3-202ENST00000453259 ZRANB1Q9UGI0 708 aa21.46■■□□□ 1.03
LYSMD3-202ENST00000453259 SPATA31E1Q6ZUB1 1445 aa21.45■■□□□ 1.02
LYSMD3-202ENST00000453259 FOXO3O43524 673 aa21.44■■□□□ 1.02
LYSMD3-202ENST00000453259 GJD4Q96KN9 370 aaPredicted RBP21.44■■□□□ 1.02
LYSMD3-202ENST00000453259 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
LYSMD3-202ENST00000453259 IFT172Q9UG01 1749 aa21.43■■□□□ 1.02
LYSMD3-202ENST00000453259 EP400Q96L91 3159 aa21.42■■□□□ 1.02
LYSMD3-202ENST00000453259 PIK3C2GO75747 1445 aa21.42■■□□□ 1.02
LYSMD3-202ENST00000453259 SIRT1Q96EB6 747 aa21.42■■□□□ 1.02
LYSMD3-202ENST00000453259 SRCAPQ6ZRS2 3230 aa21.42■■□□□ 1.02
LYSMD3-202ENST00000453259 FMN2Q9NZ56 1722 aa21.41■■□□□ 1.02
LYSMD3-202ENST00000453259 SLIT2O94813 1529 aa21.41■■□□□ 1.02
LYSMD3-202ENST00000453259 ADGRF5Q8IZF2 1346 aa21.41■■□□□ 1.02
LYSMD3-202ENST00000453259 SPATA31A3Q5VYP0 1347 aa21.4■■□□□ 1.02
LYSMD3-202ENST00000453259 UNC5CLQ8IV45 518 aa21.39■■□□□ 1.01
LYSMD3-202ENST00000453259 USP32Q8NFA0 1604 aa21.38■■□□□ 1.01
LYSMD3-202ENST00000453259 BLMP54132 1417 aaPredicted RBP21.38■■□□□ 1.01
LYSMD3-202ENST00000453259 YTHDC2Q9H6S0 1430 aaKnown RBP21.38■■□□□ 1.01
LYSMD3-202ENST00000453259 RALGAPBQ86X10 1494 aa21.37■■□□□ 1.01
LYSMD3-202ENST00000453259 WAPLQ7Z5K2 1190 aa21.36■■□□□ 1.01
LYSMD3-202ENST00000453259 STK26Q9P289 416 aa21.36■■□□□ 1.01
LYSMD3-202ENST00000453259 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
LYSMD3-202ENST00000453259 PSME1Q06323 249 aa21.34■■□□□ 1.01
LYSMD3-202ENST00000453259 TNS3Q68CZ2 1445 aa21.34■■□□□ 1.01
LYSMD3-202ENST00000453259 GLI3P10071 1580 aa21.34■■□□□ 1.01
LYSMD3-202ENST00000453259 RGL3Q3MIN7 710 aa21.33■■□□□ 1.01
LYSMD3-202ENST00000453259 SBNO1A3KN83 1393 aa21.33■■□□□ 1
LYSMD3-202ENST00000453259 PLEKHH1Q9ULM0 1364 aa21.33■■□□□ 1
LYSMD3-202ENST00000453259 NWD2Q9ULI1 1742 aa21.32■■□□□ 1
LYSMD3-202ENST00000453259 KRT28Q7Z3Y7 464 aa21.32■■□□□ 1
LYSMD3-202ENST00000453259 MPHOSPH9Q99550 1183 aa21.32■■□□□ 1
LYSMD3-202ENST00000453259 ARHGEF10O15013 1369 aa21.32■■□□□ 1
LYSMD3-202ENST00000453259 NRXN1Q9ULB1 1477 aa21.32■■□□□ 1
LYSMD3-202ENST00000453259 NUTM2FA1L443 756 aa21.3■■□□□ 1
LYSMD3-202ENST00000453259 VPS72Q15906 364 aa21.3■■□□□ 1
LYSMD3-202ENST00000453259 TMEM132EQ6IEE7 984 aa21.3■■□□□ 1
LYSMD3-202ENST00000453259 C14orf93Q9H972 538 aaKnown RBP21.3■■□□□ 1
LYSMD3-202ENST00000453259 DHX57Q6P158 1386 aaKnown RBP21.29■■□□□ 1
LYSMD3-202ENST00000453259 PHF8Q9UPP1 1060 aa21.29■■□□□ 1
LYSMD3-202ENST00000453259 ANKARQ7Z5J8 1434 aa21.29■■□□□ 1
LYSMD3-202ENST00000453259 ONECUT3O60422 494 aaPredicted RBP21.28■■□□□ 1
LYSMD3-202ENST00000453259 HAP1P54257 671 aaPredicted RBP21.28■■□□□ 1
LYSMD3-202ENST00000453259 SF3B2Q13435 895 aaKnown RBP21.27■■□□□ 1
LYSMD3-202ENST00000453259 DLC1Q96QB1 1528 aa21.27■■□□□ 1
LYSMD3-202ENST00000453259 PLCH1Q4KWH8 1693 aa21.25■□□□□ 0.99
LYSMD3-202ENST00000453259 ABCA3Q99758 1704 aa21.24■□□□□ 0.99
LYSMD3-202ENST00000453259 ADGRB2O60241 1585 aa21.24■□□□□ 0.99
LYSMD3-202ENST00000453259 SEPT12Q8IYM1 358 aa21.24■□□□□ 0.99
LYSMD3-202ENST00000453259 EIF3AQ14152 1382 aaKnown RBP21.23■□□□□ 0.99
LYSMD3-202ENST00000453259 BRWD3Q6RI45 1802 aa21.22■□□□□ 0.99
LYSMD3-202ENST00000453259 RGPD8O14715 1765 aaPredicted RBP21.2■□□□□ 0.99
LYSMD3-202ENST00000453259 LRP5O75197 1615 aa21.2■□□□□ 0.98
LYSMD3-202ENST00000453259 KRT27Q7Z3Y8 459 aa21.2■□□□□ 0.98
LYSMD3-202ENST00000453259 PRAM1Q96QH2 718 aa21.19■□□□□ 0.98
LYSMD3-202ENST00000453259 CFAP70Q5T0N1 1121 aa21.17■□□□□ 0.98
LYSMD3-202ENST00000453259 CCDC9Q9Y3X0 531 aaKnown RBP21.17■□□□□ 0.98
LYSMD3-202ENST00000453259 GPRASP1Q5JY77 1395 aa21.16■□□□□ 0.98
LYSMD3-202ENST00000453259 CABLES1Q8TDN4 633 aa21.16■□□□□ 0.98
LYSMD3-202ENST00000453259 POGKQ9P215 609 aa21.16■□□□□ 0.98
LYSMD3-202ENST00000453259 COL14A1Q05707 1796 aaKnown RBP21.15■□□□□ 0.98
LYSMD3-202ENST00000453259 NRAPQ86VF7 1730 aa21.15■□□□□ 0.98
LYSMD3-202ENST00000453259 LMOD2Q6P5Q4 547 aa21.15■□□□□ 0.98
LYSMD3-202ENST00000453259 STAC3Q96MF2 364 aa21.15■□□□□ 0.98
LYSMD3-202ENST00000453259 TRPM3Q9HCF6 1732 aaPredicted RBP21.15■□□□□ 0.98
LYSMD3-202ENST00000453259 ADGRB1O14514 1584 aa21.14■□□□□ 0.98
LYSMD3-202ENST00000453259 FAM83GA6ND36 823 aa21.14■□□□□ 0.97
LYSMD3-202ENST00000453259 BAG6P46379 1132 aa21.14■□□□□ 0.97
LYSMD3-202ENST00000453259 DEFB132Q7Z7B7 95 aa21.14■□□□□ 0.97
LYSMD3-202ENST00000453259 ALS2Q96Q42 1657 aa21.13■□□□□ 0.97
LYSMD3-202ENST00000453259 TULP4Q9NRJ4 1543 aa21.13■□□□□ 0.97
LYSMD3-202ENST00000453259 SAFB2Q14151 953 aaKnown RBP eCLIP21.1■□□□□ 0.97
LYSMD3-202ENST00000453259 PMFBP1Q8TBY8 1022 aa21.09■□□□□ 0.97
LYSMD3-202ENST00000453259 BTG4Q9NY30 223 aa21.09■□□□□ 0.97
LYSMD3-202ENST00000453259 DISP2A7MBM2 1401 aa21.09■□□□□ 0.97
LYSMD3-202ENST00000453259 RGPD1P0DJD0 1748 aa21.09■□□□□ 0.97
LYSMD3-202ENST00000453259 A0A0G2JS52 829 aa21.08■□□□□ 0.97
LYSMD3-202ENST00000453259 MYT1Q01538 1121 aa21.08■□□□□ 0.97
LYSMD3-202ENST00000453259 FAM98CQ17RN3 349 aaKnown RBP21.07■□□□□ 0.96
LYSMD3-202ENST00000453259 SPATA31A5Q5VU36 1347 aa21.06■□□□□ 0.96
LYSMD3-202ENST00000453259 SPATA31A7Q8IWB4 1347 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms