RNA–Protein interactions for RNA: ENST00000449502.5

RFC4-210, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 799 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-210ENST00000449502 CC2D1BQ5T0F9 858 aaKnown RBP13.16□□□□□ -0.3
RFC4-210ENST00000449502 SLC12A5Q9H2X9 1139 aa13.16□□□□□ -0.3
RFC4-210ENST00000449502 PLEKHH1Q9ULM0 1364 aa13.16□□□□□ -0.3
RFC4-210ENST00000449502 NINLQ9Y2I6 1382 aa13.16□□□□□ -0.3
RFC4-210ENST00000449502 MED14O60244 1454 aa13.16□□□□□ -0.3
RFC4-210ENST00000449502 DIP2AQ14689 1571 aa13.15□□□□□ -0.3
RFC4-210ENST00000449502 WASLO00401 505 aaPredicted RBP13.15□□□□□ -0.3
RFC4-210ENST00000449502 HDGFL2Q7Z4V5 671 aaPredicted RBP13.15□□□□□ -0.3
RFC4-210ENST00000449502 MRS2Q9HD23 443 aa13.15□□□□□ -0.3
RFC4-210ENST00000449502 TERF2IPQ9NYB0 399 aa13.15□□□□□ -0.3
RFC4-210ENST00000449502 ROBO2Q9HCK4 1378 aa13.15□□□□□ -0.3
RFC4-210ENST00000449502 POLR1AO95602 1720 aaPredicted RBP13.14□□□□□ -0.31
RFC4-210ENST00000449502 PER1O15534 1290 aaPredicted RBP13.14□□□□□ -0.31
RFC4-210ENST00000449502 CENPBP07199 599 aaPredicted RBP13.14□□□□□ -0.31
RFC4-210ENST00000449502 NRXN3Q9Y4C0 1643 aa13.13□□□□□ -0.31
RFC4-210ENST00000449502 ZNF142P52746 1687 aaPredicted RBP13.13□□□□□ -0.31
RFC4-210ENST00000449502 QRICH2Q9H0J4 1663 aa13.13□□□□□ -0.31
RFC4-210ENST00000449502 KCNA6P17658 529 aa13.12□□□□□ -0.31
RFC4-210ENST00000449502 PTPRUQ92729 1446 aa13.12□□□□□ -0.31
RFC4-210ENST00000449502 MYBBP1AQ9BQG0 1328 aaKnown RBP13.12□□□□□ -0.31
RFC4-210ENST00000449502 ARHGEF28Q8N1W1 1705 aaKnown RBP13.11□□□□□ -0.31
RFC4-210ENST00000449502 C14orf37Q86TY3 774 aa13.11□□□□□ -0.31
RFC4-210ENST00000449502 TULP4Q9NRJ4 1543 aa13.11□□□□□ -0.31
RFC4-210ENST00000449502 PTCH1Q13635 1447 aa13.11□□□□□ -0.31
RFC4-210ENST00000449502 ANKRD36BQ8N2N9 1353 aa13.1□□□□□ -0.31
RFC4-210ENST00000449502 HSPA2P54652 639 aa13.1□□□□□ -0.31
RFC4-210ENST00000449502 NUDT16Q96DE0 195 aaKnown RBP13.1□□□□□ -0.31
RFC4-210ENST00000449502 CABP1Q9NZU7 370 aa13.1□□□□□ -0.31
RFC4-210ENST00000449502 SETD1BQ9UPS6 1966 aaKnown RBP13.1□□□□□ -0.31
RFC4-210ENST00000449502 CGNL1Q0VF96 1302 aa13.1□□□□□ -0.31
RFC4-210ENST00000449502 CPS1P31327 1500 aa13.09□□□□□ -0.31
RFC4-210ENST00000449502 AMER1Q5JTC6 1135 aaPredicted RBP13.09□□□□□ -0.31
RFC4-210ENST00000449502 NLRP13Q86W25 1043 aa13.09□□□□□ -0.31
RFC4-210ENST00000449502 CCDC61Q9Y6R9 512 aa13.09□□□□□ -0.31
RFC4-210ENST00000449502 NPC1L1Q9UHC9 1359 aa13.08□□□□□ -0.31
RFC4-210ENST00000449502 NSD3Q9BZ95 1437 aa13.08□□□□□ -0.32
RFC4-210ENST00000449502 CARD14Q9BXL6 1004 aa13.08□□□□□ -0.32
RFC4-210ENST00000449502 PARD3Q8TEW0 1356 aa13.07□□□□□ -0.32
RFC4-210ENST00000449502 MORC1Q86VD1 984 aa13.07□□□□□ -0.32
RFC4-210ENST00000449502 SETD1AO15047 1707 aaKnown RBP13.07□□□□□ -0.32
RFC4-210ENST00000449502 PROSER2Q86WR7 435 aaPredicted RBP13.06□□□□□ -0.32
RFC4-210ENST00000449502 KNDC1Q76NI1 1749 aa13.05□□□□□ -0.32
RFC4-210ENST00000449502 NUTM2FA1L443 756 aa13.05□□□□□ -0.32
RFC4-210ENST00000449502 FAM9BQ8IZU0 186 aa13.05□□□□□ -0.32
RFC4-210ENST00000449502 ZNF692Q9BU19 519 aaPredicted RBP13.05□□□□□ -0.32
RFC4-210ENST00000449502 BRD4O60885 1362 aaPredicted RBP13.05□□□□□ -0.32
RFC4-210ENST00000449502 PPIP5K1Q6PFW1 1433 aa13.05□□□□□ -0.32
RFC4-210ENST00000449502 A0A1W2PP64 1363 aa13.04□□□□□ -0.32
RFC4-210ENST00000449502 NSD2O96028 1365 aa13.04□□□□□ -0.32
RFC4-210ENST00000449502 PPP2R1AP30153 589 aa13.02□□□□□ -0.33
RFC4-210ENST00000449502 CCDC184Q52MB2 194 aa13.02□□□□□ -0.33
RFC4-210ENST00000449502 NGDNQ8NEJ9 315 aaKnown RBP13.02□□□□□ -0.33
RFC4-210ENST00000449502 DMRT2Q9Y5R5 561 aa13.02□□□□□ -0.33
RFC4-210ENST00000449502 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.01□□□□□ -0.33
RFC4-210ENST00000449502 ATP7BP35670 1465 aa13.01□□□□□ -0.33
RFC4-210ENST00000449502 LMTK3Q96Q04 1460 aa13□□□□□ -0.33
RFC4-210ENST00000449502 PRR36Q9H6K5 1346 aa13□□□□□ -0.33
RFC4-210ENST00000449502 PLEKHG3A1L390 1219 aa13□□□□□ -0.33
RFC4-210ENST00000449502 TNNT2P45379 298 aaPredicted RBP13□□□□□ -0.33
RFC4-210ENST00000449502 RBM33Q96EV2 1170 aaKnown RBP13□□□□□ -0.33
RFC4-210ENST00000449502 HNRNPUQ00839 825 aaKnown RBP eCLIP12.99□□□□□ -0.33
RFC4-210ENST00000449502 WDR43Q15061 677 aaKnown RBP eCLIP12.99□□□□□ -0.33
RFC4-210ENST00000449502 CFAP53Q96M91 514 aa12.99□□□□□ -0.33
RFC4-210ENST00000449502 ADGRB2O60241 1585 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 ANKARQ7Z5J8 1434 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 ACEP12821 1306 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 ATF3P18847 181 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 PMFBP1Q8TBY8 1022 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 GGNBP2Q9H3C7 697 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 XRN1Q8IZH2 1706 aaKnown RBP12.98□□□□□ -0.33
RFC4-210ENST00000449502 MYOM1P52179 1685 aa12.98□□□□□ -0.33
RFC4-210ENST00000449502 EDC4Q6P2E9 1401 aaKnown RBP12.97□□□□□ -0.33
RFC4-210ENST00000449502 PNISRQ8TF01 805 aaKnown RBP12.97□□□□□ -0.33
RFC4-210ENST00000449502 C19orf44Q9H6X5 657 aa12.97□□□□□ -0.33
RFC4-210ENST00000449502 ADGRL3Q9HAR2 1447 aa12.96□□□□□ -0.33
RFC4-210ENST00000449502 FYB1O15117 783 aa12.96□□□□□ -0.33
RFC4-210ENST00000449502 COG3Q96JB2 828 aa12.96□□□□□ -0.33
RFC4-210ENST00000449502 NKTRP30414 1462 aaKnown RBP12.96□□□□□ -0.34
RFC4-210ENST00000449502 ESCO1Q5FWF5 840 aa12.95□□□□□ -0.34
RFC4-210ENST00000449502 PHF8Q9UPP1 1060 aa12.95□□□□□ -0.34
RFC4-210ENST00000449502 CD163L1Q9NR16 1453 aa12.95□□□□□ -0.34
RFC4-210ENST00000449502 CPSF1Q10570 1443 aaKnown RBP12.95□□□□□ -0.34
RFC4-210ENST00000449502 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.94□□□□□ -0.34
RFC4-210ENST00000449502 NCOA3Q9Y6Q9 1424 aa12.94□□□□□ -0.34
RFC4-210ENST00000449502 TMEM94Q12767 1356 aa12.94□□□□□ -0.34
RFC4-210ENST00000449502 TTC21BQ7Z4L5 1316 aa12.93□□□□□ -0.34
RFC4-210ENST00000449502 CADPS2Q86UW7 1296 aa12.93□□□□□ -0.34
RFC4-210ENST00000449502 NME9Q86XW9 330 aa12.93□□□□□ -0.34
RFC4-210ENST00000449502 CDC42BPGQ6DT37 1551 aa12.93□□□□□ -0.34
RFC4-210ENST00000449502 MSH6P52701 1360 aa12.93□□□□□ -0.34
RFC4-210ENST00000449502 TTC21AQ8NDW8 1320 aa12.92□□□□□ -0.34
RFC4-210ENST00000449502 MTHFSP49914 203 aa12.92□□□□□ -0.34
RFC4-210ENST00000449502 PSME1Q06323 249 aa12.92□□□□□ -0.34
RFC4-210ENST00000449502 NWD1Q149M9 1564 aa12.92□□□□□ -0.34
RFC4-210ENST00000449502 PAK3O75914 559 aaPredicted RBP12.91□□□□□ -0.34
RFC4-210ENST00000449502 NUDCQ9Y266 331 aa12.91□□□□□ -0.34
RFC4-210ENST00000449502 USP32Q8NFA0 1604 aa12.91□□□□□ -0.34
RFC4-210ENST00000449502 USP6P35125 1406 aa12.9□□□□□ -0.34
RFC4-210ENST00000449502 PPM1GO15355 546 aaPredicted RBP12.9□□□□□ -0.34
RFC4-210ENST00000449502 POLR3AO14802 1390 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms