RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SLKQ9H2G2 1235 aaPredicted RBP24.4■■□□□ 1.5
HMGA1-205ENST00000447654 EFCAB6Q5THR3 1501 aa24.39■■□□□ 1.5
HMGA1-205ENST00000447654 SENP3-EIF4A1A0A087X0R7 540 aa24.39■■□□□ 1.5
HMGA1-205ENST00000447654 A0A0U1RQG5 324 aaPredicted RBP24.39■■□□□ 1.5
HMGA1-205ENST00000447654 TRAK2O60296 914 aa24.38■■□□□ 1.49
HMGA1-205ENST00000447654 KIAA1211Q6ZU35 1233 aa24.38■■□□□ 1.49
HMGA1-205ENST00000447654 C20orf194Q5TEA3 1177 aa24.37■■□□□ 1.49
HMGA1-205ENST00000447654 MLH3Q9UHC1 1453 aa24.37■■□□□ 1.49
HMGA1-205ENST00000447654 DDX11L8A8MPP1 907 aa24.36■■□□□ 1.49
HMGA1-205ENST00000447654 OFD1O75665 1012 aa24.36■■□□□ 1.49
HMGA1-205ENST00000447654 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.36■■□□□ 1.49
HMGA1-205ENST00000447654 RGS3P49796 1198 aa24.36■■□□□ 1.49
HMGA1-205ENST00000447654 CFAP74Q9C0B2 1584 aa24.35■■□□□ 1.49
HMGA1-205ENST00000447654 IQGAP1P46940 1657 aa24.34■■□□□ 1.49
HMGA1-205ENST00000447654 ABCA6Q8N139 1617 aa24.34■■□□□ 1.49
HMGA1-205ENST00000447654 HECW2Q9P2P5 1572 aa24.34■■□□□ 1.49
HMGA1-205ENST00000447654 NCLP19338 710 aaKnown RBP24.34■■□□□ 1.49
HMGA1-205ENST00000447654 UPF2Q9HAU5 1272 aaKnown RBP24.34■■□□□ 1.49
HMGA1-205ENST00000447654 GGT6Q6P531 493 aa24.33■■□□□ 1.49
HMGA1-205ENST00000447654 CHMP5Q9NZZ3 219 aa24.33■■□□□ 1.48
HMGA1-205ENST00000447654 LMTK2Q8IWU2 1503 aa24.32■■□□□ 1.48
HMGA1-205ENST00000447654 CFAP65Q6ZU64 1925 aaKnown RBP24.32■■□□□ 1.48
HMGA1-205ENST00000447654 ADGRF5Q8IZF2 1346 aa24.32■■□□□ 1.48
HMGA1-205ENST00000447654 UTP14CQ5TAP6 766 aaKnown RBP24.32■■□□□ 1.48
HMGA1-205ENST00000447654 PDE4CQ08493 712 aa24.31■■□□□ 1.48
HMGA1-205ENST00000447654 PANK3Q9H999 370 aa24.31■■□□□ 1.48
HMGA1-205ENST00000447654 MROH2AA6NES4 1674 aa24.31■■□□□ 1.48
HMGA1-205ENST00000447654 TMF1P82094 1093 aa24.3■■□□□ 1.48
HMGA1-205ENST00000447654 NPATQ14207 1427 aa24.29■■□□□ 1.48
HMGA1-205ENST00000447654 TBC1D32Q96NH3 1257 aa24.29■■□□□ 1.48
HMGA1-205ENST00000447654 PTMSP20962 102 aa24.29■■□□□ 1.48
HMGA1-205ENST00000447654 TBC1D2Q9BYX2 928 aa24.29■■□□□ 1.48
HMGA1-205ENST00000447654 CFAP70Q5T0N1 1121 aa24.28■■□□□ 1.48
HMGA1-205ENST00000447654 NEO1Q92859 1461 aa24.28■■□□□ 1.48
HMGA1-205ENST00000447654 CCDC173Q0VFZ6 552 aa24.27■■□□□ 1.48
HMGA1-205ENST00000447654 ZSCAN30Q86W11 494 aa24.27■■□□□ 1.48
HMGA1-205ENST00000447654 NEURL4Q96JN8 1562 aa24.27■■□□□ 1.48
HMGA1-205ENST00000447654 SCAF11Q99590 1463 aaKnown RBP24.27■■□□□ 1.48
HMGA1-205ENST00000447654 RIPK4P57078 832 aa24.26■■□□□ 1.47
HMGA1-205ENST00000447654 ARXQ96QS3 562 aa24.26■■□□□ 1.47
HMGA1-205ENST00000447654 GZF1Q9H116 711 aaPredicted RBP24.26■■□□□ 1.47
HMGA1-205ENST00000447654 CC2D1BQ5T0F9 858 aaKnown RBP24.26■■□□□ 1.47
HMGA1-205ENST00000447654 PPP1R9BQ96SB3 815 aa24.26■■□□□ 1.47
HMGA1-205ENST00000447654 KIF1BO60333 1816 aa24.26■■□□□ 1.47
HMGA1-205ENST00000447654 STAC3Q96MF2 364 aa24.25■■□□□ 1.47
HMGA1-205ENST00000447654 MAP3K4Q9Y6R4 1608 aa24.25■■□□□ 1.47
HMGA1-205ENST00000447654 IFT172Q9UG01 1749 aa24.23■■□□□ 1.47
HMGA1-205ENST00000447654 SKOR2Q2VWA4 1001 aaPredicted RBP24.23■■□□□ 1.47
HMGA1-205ENST00000447654 HS1BP3Q53T59 392 aa24.22■■□□□ 1.47
HMGA1-205ENST00000447654 DUSP27Q5VZP5 1158 aa24.22■■□□□ 1.47
HMGA1-205ENST00000447654 ABCC3O15438 1527 aa24.22■■□□□ 1.47
HMGA1-205ENST00000447654 MYOM2P54296 1465 aa24.22■■□□□ 1.47
HMGA1-205ENST00000447654 NINLQ9Y2I6 1382 aa24.22■■□□□ 1.47
HMGA1-205ENST00000447654 DIP2CQ9Y2E4 1556 aa24.21■■□□□ 1.47
HMGA1-205ENST00000447654 RICTORQ6R327 1708 aa24.21■■□□□ 1.47
HMGA1-205ENST00000447654 YEATS2Q9ULM3 1422 aa24.2■■□□□ 1.46
HMGA1-205ENST00000447654 KIAA1210Q9ULL0 1709 aa24.2■■□□□ 1.46
HMGA1-205ENST00000447654 SEC24BO95487 1268 aa24.2■■□□□ 1.46
HMGA1-205ENST00000447654 ADGRB3O60242 1522 aa24.2■■□□□ 1.46
HMGA1-205ENST00000447654 CHGAP10645 457 aaKnown RBP24.19■■□□□ 1.46
HMGA1-205ENST00000447654 NOS1P29475 1434 aa24.18■■□□□ 1.46
HMGA1-205ENST00000447654 SIGLEC1Q9BZZ2 1709 aa24.18■■□□□ 1.46
HMGA1-205ENST00000447654 NRXN1Q9ULB1 1477 aa24.18■■□□□ 1.46
HMGA1-205ENST00000447654 CGNL1Q0VF96 1302 aa24.17■■□□□ 1.46
HMGA1-205ENST00000447654 DYNC1I1O14576 645 aa24.16■■□□□ 1.46
HMGA1-205ENST00000447654 ZNF521Q96K83 1311 aa24.16■■□□□ 1.46
HMGA1-205ENST00000447654 MSNP26038 577 aaKnown RBP24.16■■□□□ 1.46
HMGA1-205ENST00000447654 DMTNQ08495 405 aa24.15■■□□□ 1.46
HMGA1-205ENST00000447654 ANP32BQ92688 251 aaKnown RBP24.14■■□□□ 1.45
HMGA1-205ENST00000447654 IBTKQ9P2D0 1353 aaPredicted RBP24.13■■□□□ 1.45
HMGA1-205ENST00000447654 CAMSAP1Q5T5Y3 1602 aa24.13■■□□□ 1.45
HMGA1-205ENST00000447654 GOLGA2Q08379 1002 aa24.12■■□□□ 1.45
HMGA1-205ENST00000447654 KIF13AQ9H1H9 1805 aa24.12■■□□□ 1.45
HMGA1-205ENST00000447654 MYOM1P52179 1685 aa24.12■■□□□ 1.45
HMGA1-205ENST00000447654 NCOA3Q9Y6Q9 1424 aa24.11■■□□□ 1.45
HMGA1-205ENST00000447654 ZNF500O60304 480 aaPredicted RBP24.11■■□□□ 1.45
HMGA1-205ENST00000447654 FAM69CQ0P6D2 419 aa24.1■■□□□ 1.45
HMGA1-205ENST00000447654 PDE3AQ14432 1141 aa24.1■■□□□ 1.45
HMGA1-205ENST00000447654 FAM13BQ9NYF5 915 aa24.1■■□□□ 1.45
HMGA1-205ENST00000447654 CIZ1Q9ULV3 898 aaPredicted RBP24.1■■□□□ 1.45
HMGA1-205ENST00000447654 GLI2P10070 1586 aa24.1■■□□□ 1.45
HMGA1-205ENST00000447654 AMER1Q5JTC6 1135 aaPredicted RBP24.1■■□□□ 1.45
HMGA1-205ENST00000447654 PPLO60437 1756 aa24.09■■□□□ 1.45
HMGA1-205ENST00000447654 TRMT2AQ8IZ69 625 aaKnown RBP24.09■■□□□ 1.45
HMGA1-205ENST00000447654 SYNMO15061 1565 aa24.09■■□□□ 1.45
HMGA1-205ENST00000447654 ERVK-7P63135 1459 aa24.09■■□□□ 1.45
HMGA1-205ENST00000447654 CSPP1Q1MSJ5 1256 aa24.09■■□□□ 1.45
HMGA1-205ENST00000447654 NUTM2DQ5VT03 806 aaPredicted RBP24.09■■□□□ 1.45
HMGA1-205ENST00000447654 IGHDP01880 384 aa24.08■■□□□ 1.45
HMGA1-205ENST00000447654 PIK3C2GO75747 1445 aa24.08■■□□□ 1.45
HMGA1-205ENST00000447654 TNNT2P45379 298 aaPredicted RBP24.08■■□□□ 1.44
HMGA1-205ENST00000447654 GBP4Q96PP9 640 aa24.08■■□□□ 1.44
HMGA1-205ENST00000447654 SLFN5Q08AF3 891 aa24.06■■□□□ 1.44
HMGA1-205ENST00000447654 ZNF692Q9BU19 519 aaPredicted RBP24.06■■□□□ 1.44
HMGA1-205ENST00000447654 NKTRP30414 1462 aaKnown RBP24.06■■□□□ 1.44
HMGA1-205ENST00000447654 KIF20AO95235 890 aa24.06■■□□□ 1.44
HMGA1-205ENST00000447654 DDIT3P35638 169 aa24.06■■□□□ 1.44
HMGA1-205ENST00000447654 TMEM132EQ6IEE7 984 aa24.06■■□□□ 1.44
HMGA1-205ENST00000447654 GAS2L3Q86XJ1 694 aa24.06■■□□□ 1.44
HMGA1-205ENST00000447654 PLEKHH1Q9ULM0 1364 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms