RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FMNL1O95466 1100 aaPredicted RBP9.9□□□□□ -0.82
VPS29-202ENST00000447578 AVPP01185 164 aa9.9□□□□□ -0.82
VPS29-202ENST00000447578 LCE2CQ5TA81 110 aa9.9□□□□□ -0.82
VPS29-202ENST00000447578 LMOD2Q6P5Q4 547 aa9.9□□□□□ -0.82
VPS29-202ENST00000447578 PRDM9Q9NQV7 894 aa9.9□□□□□ -0.82
VPS29-202ENST00000447578 TULP1O00294 542 aaPredicted RBP9.89□□□□□ -0.83
VPS29-202ENST00000447578 MDM2Q00987 491 aaPredicted RBP9.89□□□□□ -0.83
VPS29-202ENST00000447578 CTC1Q2NKJ3 1217 aa9.89□□□□□ -0.83
VPS29-202ENST00000447578 BRICD5Q6PL45 260 aa9.89□□□□□ -0.83
VPS29-202ENST00000447578 RNF19BQ6ZMZ0 732 aa9.89□□□□□ -0.83
VPS29-202ENST00000447578 FCF1Q9Y324 198 aaKnown RBP9.89□□□□□ -0.83
VPS29-202ENST00000447578 CD46P15529 392 aa9.88□□□□□ -0.83
VPS29-202ENST00000447578 FOXC1Q12948 553 aa9.86□□□□□ -0.83
VPS29-202ENST00000447578 SALL2Q9Y467 1007 aaPredicted RBP9.86□□□□□ -0.83
VPS29-202ENST00000447578 MINK1Q8N4C8 1332 aaPredicted RBP9.85□□□□□ -0.83
VPS29-202ENST00000447578 CCDC102AQ96A19 550 aa9.85□□□□□ -0.83
VPS29-202ENST00000447578 PKD2L1Q9P0L9 805 aa9.85□□□□□ -0.83
VPS29-202ENST00000447578 SMCPP49901 116 aaPredicted RBP9.84□□□□□ -0.83
VPS29-202ENST00000447578 GRIPAP1Q4V328 841 aa9.84□□□□□ -0.83
VPS29-202ENST00000447578 HLA-CQ95604 372 aa9.84□□□□□ -0.83
VPS29-202ENST00000447578 KDM4AO75164 1064 aa9.83□□□□□ -0.84
VPS29-202ENST00000447578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS29-202ENST00000447578 RPIAP49247 311 aa9.82□□□□□ -0.84
VPS29-202ENST00000447578 MSS51Q4VC12 460 aa9.81□□□□□ -0.84
VPS29-202ENST00000447578 ZSCAN1Q8NBB4 408 aa9.81□□□□□ -0.84
VPS29-202ENST00000447578 CD2BP2O95400 341 aaKnown RBP9.8□□□□□ -0.84
VPS29-202ENST00000447578 GUCA2AQ02747 115 aa9.79□□□□□ -0.84
VPS29-202ENST00000447578 Q3C1V9 767 aa9.79□□□□□ -0.84
VPS29-202ENST00000447578 TOR4AQ9NXH8 423 aa9.79□□□□□ -0.84
VPS29-202ENST00000447578 GPCPD1Q9NPB8 672 aa9.78□□□□□ -0.84
VPS29-202ENST00000447578 CYP4X1Q8N118 509 aa9.77□□□□□ -0.85
VPS29-202ENST00000447578 USB1Q9BQ65 265 aaKnown RBP9.77□□□□□ -0.85
VPS29-202ENST00000447578 REPIN1Q9BWE0 567 aaKnown RBP9.77□□□□□ -0.85
VPS29-202ENST00000447578 FAM217BQ9NTX9 383 aaPredicted RBP9.77□□□□□ -0.85
VPS29-202ENST00000447578 ZBTB24O43167 697 aaPredicted RBP9.76□□□□□ -0.85
VPS29-202ENST00000447578 HOXA2O43364 376 aa9.76□□□□□ -0.85
VPS29-202ENST00000447578 SNRPBP14678 240 aaKnown RBP9.76□□□□□ -0.85
VPS29-202ENST00000447578 MMP16P51512 607 aa9.76□□□□□ -0.85
VPS29-202ENST00000447578 SLC16A10Q8TF71 515 aa9.76□□□□□ -0.85
VPS29-202ENST00000447578 SENP2Q9HC62 589 aa9.76□□□□□ -0.85
VPS29-202ENST00000447578 CLCN1P35523 988 aa9.75□□□□□ -0.85
VPS29-202ENST00000447578 USP46P62068 366 aa9.75□□□□□ -0.85
VPS29-202ENST00000447578 SYMPKQ92797 1274 aaKnown RBP9.75□□□□□ -0.85
VPS29-202ENST00000447578 LORP23490 312 aaPredicted RBP9.74□□□□□ -0.85
VPS29-202ENST00000447578 KRI1Q8N9T8 703 aaKnown RBP9.74□□□□□ -0.85
VPS29-202ENST00000447578 DXOO77932 396 aaKnown RBP9.73□□□□□ -0.85
VPS29-202ENST00000447578 TRIM47Q96LD4 638 aa9.73□□□□□ -0.85
VPS29-202ENST00000447578 ATP13A2Q9NQ11 1180 aa9.73□□□□□ -0.85
VPS29-202ENST00000447578 CCDC24Q8N4L8 307 aa9.72□□□□□ -0.85
VPS29-202ENST00000447578 TRIM32Q13049 653 aa9.71□□□□□ -0.86
VPS29-202ENST00000447578 NUTM1Q86Y26 1132 aa9.71□□□□□ -0.86
VPS29-202ENST00000447578 SSTR3P32745 418 aaPredicted RBP9.69□□□□□ -0.86
VPS29-202ENST00000447578 GMPRP36959 345 aa9.69□□□□□ -0.86
VPS29-202ENST00000447578 BARGINQ6ZT62 677 aa9.69□□□□□ -0.86
VPS29-202ENST00000447578 TTC24A2A3L6 582 aaPredicted RBP9.68□□□□□ -0.86
VPS29-202ENST00000447578 ZMYND10O75800 440 aa9.68□□□□□ -0.86
VPS29-202ENST00000447578 ZC3H15Q8WU90 426 aaKnown RBP9.68□□□□□ -0.86
VPS29-202ENST00000447578 KIFC2Q96AC6 838 aa9.68□□□□□ -0.86
VPS29-202ENST00000447578 PCDHGC3Q9UN70 934 aa9.68□□□□□ -0.86
VPS29-202ENST00000447578 WNT7AO00755 349 aa9.67□□□□□ -0.86
VPS29-202ENST00000447578 MRGPRX2Q96LB1 330 aa9.67□□□□□ -0.86
VPS29-202ENST00000447578 SPIRE2Q8WWL2 714 aa9.66□□□□□ -0.86
VPS29-202ENST00000447578 FDX1P10109 184 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 SMPD1P17405 629 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 JUNDP17535 347 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 NDUFV2P19404 249 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 SKOR1P84550 965 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 TTLL12Q14166 644 aaPredicted RBP9.65□□□□□ -0.86
VPS29-202ENST00000447578 IRF7Q92985 503 aa9.65□□□□□ -0.86
VPS29-202ENST00000447578 J3QL48 77 aa9.64□□□□□ -0.87
VPS29-202ENST00000447578 SNIP1Q8TAD8 396 aaKnown RBP9.64□□□□□ -0.87
VPS29-202ENST00000447578 C6orf229H3BNL8 230 aa9.63□□□□□ -0.87
VPS29-202ENST00000447578 PTCRAQ6ISU1 281 aaPredicted RBP9.63□□□□□ -0.87
VPS29-202ENST00000447578 RETREG3Q86VR2 466 aa9.63□□□□□ -0.87
VPS29-202ENST00000447578 NXF1Q9UBU9 619 aaKnown RBP9.63□□□□□ -0.87
VPS29-202ENST00000447578 MOXD2PA6NHM9 499 aa9.62□□□□□ -0.87
VPS29-202ENST00000447578 AMHR2Q16671 573 aa9.62□□□□□ -0.87
VPS29-202ENST00000447578 RC3H1Q5TC82 1133 aaKnown RBP9.62□□□□□ -0.87
VPS29-202ENST00000447578 GIGYF2Q6Y7W6 1299 aaKnown RBP9.62□□□□□ -0.87
VPS29-202ENST00000447578 KCTD17Q8N5Z5 321 aa9.62□□□□□ -0.87
VPS29-202ENST00000447578 NUDT12Q9BQG2 462 aa9.61□□□□□ -0.87
VPS29-202ENST00000447578 NPAS3Q8IXF0 933 aa9.6□□□□□ -0.87
VPS29-202ENST00000447578 KCNMA1Q12791 1236 aa9.59□□□□□ -0.87
VPS29-202ENST00000447578 BEGAINQ9BUH8 593 aa9.59□□□□□ -0.87
VPS29-202ENST00000447578 HPS1Q92902 700 aa9.58□□□□□ -0.88
VPS29-202ENST00000447578 WNT7BP56706 349 aa9.57□□□□□ -0.88
VPS29-202ENST00000447578 MS4A1P11836 297 aa9.56□□□□□ -0.88
VPS29-202ENST00000447578 PARP9Q8IXQ6 854 aa9.56□□□□□ -0.88
VPS29-202ENST00000447578 TRIM66O15016 1216 aa9.55□□□□□ -0.88
VPS29-202ENST00000447578 PRR7Q8TB68 274 aa9.55□□□□□ -0.88
VPS29-202ENST00000447578 ALDH1A1P00352 501 aa9.54□□□□□ -0.88
VPS29-202ENST00000447578 CCNYL3P0C7X3 344 aa9.54□□□□□ -0.88
VPS29-202ENST00000447578 TBC1D2Q9BYX2 928 aa9.54□□□□□ -0.88
VPS29-202ENST00000447578 MTMR2Q13614 643 aa9.53□□□□□ -0.88
VPS29-202ENST00000447578 PCDHB15Q9Y5E8 787 aa9.53□□□□□ -0.88
VPS29-202ENST00000447578 SIAH2O43255 324 aa9.52□□□□□ -0.89
VPS29-202ENST00000447578 SH3BP2P78314 561 aa9.52□□□□□ -0.89
VPS29-202ENST00000447578 PTPRNQ16849 979 aa9.52□□□□□ -0.89
VPS29-202ENST00000447578 LINC01559Q495D7 138 aa9.52□□□□□ -0.89
VPS29-202ENST00000447578 EHBP1Q8NDI1 1231 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms