RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, human

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRCH3-208	ENST00000443727	LRRC59	Q96AG4	307 aa	Known RBP	29.31	■■■□□ 2.28
LRCH3-208	ENST00000443727	ORAI2	Q96SN7	254 aa		29.31	■■■□□ 2.28
LRCH3-208	ENST00000443727	LAMC1	P11047	1609 aa		29.29	■■■□□ 2.28
LRCH3-208	ENST00000443727	PLEKHH1	Q9ULM0	1364 aa		29.28	■■■□□ 2.28
LRCH3-208	ENST00000443727	NHSL1	Q5SYE7	1610 aa		29.28	■■■□□ 2.28
LRCH3-208	ENST00000443727	NUTM2B	A6NNL0	878 aa	Predicted RBP	29.27	■■■□□ 2.28
LRCH3-208	ENST00000443727	NUTM2E	B1AL46	878 aa	Predicted RBP	29.27	■■■□□ 2.28
LRCH3-208	ENST00000443727	NUTM2A	Q8IVF1	878 aa	Predicted RBP	29.27	■■■□□ 2.28
LRCH3-208	ENST00000443727	KNDC1	Q76NI1	1749 aa		29.27	■■■□□ 2.28
LRCH3-208	ENST00000443727	CDC42BPG	Q6DT37	1551 aa		29.26	■■■□□ 2.28
LRCH3-208	ENST00000443727	SHPRH	Q149N8	1683 aa		29.26	■■■□□ 2.27
LRCH3-208	ENST00000443727	ESCO1	Q5FWF5	840 aa		29.26	■■■□□ 2.27
LRCH3-208	ENST00000443727	SIRT1	Q96EB6	747 aa		29.26	■■■□□ 2.27
LRCH3-208	ENST00000443727	NUTM2F	A1L443	756 aa		29.25	■■■□□ 2.27
LRCH3-208	ENST00000443727	STAC3	Q96MF2	364 aa		29.25	■■■□□ 2.27
LRCH3-208	ENST00000443727	LRP6	O75581	1613 aa		29.23	■■■□□ 2.27
LRCH3-208	ENST00000443727	SAFB2	Q14151	953 aa	Known RBP eCLIP	29.21	■■■□□ 2.27
LRCH3-208	ENST00000443727	POTEA	Q6S8J7	498 aa		29.21	■■■□□ 2.27
LRCH3-208	ENST00000443727	PRAM1	Q96QH2	718 aa		29.21	■■■□□ 2.27
LRCH3-208	ENST00000443727	POGK	Q9P215	609 aa		29.21	■■■□□ 2.27
LRCH3-208	ENST00000443727	SOS2	Q07890	1332 aa	Predicted RBP	29.18	■■■□□ 2.26
LRCH3-208	ENST00000443727	PNPLA6	Q8IY17	1366 aa		29.17	■■■□□ 2.26
LRCH3-208	ENST00000443727	NPHP3	Q7Z494	1330 aa		29.17	■■■□□ 2.26
LRCH3-208	ENST00000443727	TRAK1	Q9UPV9	953 aa		29.16	■■■□□ 2.26
LRCH3-208	ENST00000443727	FOXO3	O43524	673 aa		29.14	■■■□□ 2.26
LRCH3-208	ENST00000443727	ZNF772	Q68DY9	489 aa	Predicted RBP	29.14	■■■□□ 2.26
LRCH3-208	ENST00000443727	ADGRB1	O14514	1584 aa		29.13	■■■□□ 2.25
LRCH3-208	ENST00000443727	DLC1	Q96QB1	1528 aa		29.12	■■■□□ 2.25
LRCH3-208	ENST00000443727	XPC	Q01831	940 aa	Predicted RBP	29.11	■■■□□ 2.25
LRCH3-208	ENST00000443727	FMN2	Q9NZ56	1722 aa		29.09	■■■□□ 2.25
LRCH3-208	ENST00000443727	ADAMTS2	O95450	1211 aa		29.07	■■■□□ 2.24
LRCH3-208	ENST00000443727	C8orf37	Q96NL8	207 aa		29.07	■■■□□ 2.24
LRCH3-208	ENST00000443727	HIRIP3	Q9BW71	556 aa	Predicted RBP	29.06	■■■□□ 2.24
LRCH3-208	ENST00000443727	AFF2	P51816	1311 aa		29.05	■■■□□ 2.24
LRCH3-208	ENST00000443727	MINK1	Q8N4C8	1332 aa	Predicted RBP	29.05	■■■□□ 2.24
LRCH3-208	ENST00000443727	PXDN	Q92626	1479 aa		29.04	■■■□□ 2.24
LRCH3-208	ENST00000443727	PHF8	Q9UPP1	1060 aa		29.04	■■■□□ 2.24
LRCH3-208	ENST00000443727	NGLY1	Q96IV0	654 aa		29.01	■■■□□ 2.23
LRCH3-208	ENST00000443727	KIF1A	Q12756	1690 aa		29.01	■■■□□ 2.23
LRCH3-208	ENST00000443727	KRT28	Q7Z3Y7	464 aa		29	■■■□□ 2.23
LRCH3-208	ENST00000443727	EIF3A	Q14152	1382 aa	Known RBP	28.98	■■■□□ 2.23
LRCH3-208	ENST00000443727	ANKAR	Q7Z5J8	1434 aa		28.97	■■■□□ 2.23
LRCH3-208	ENST00000443727	RXRB	P28702	533 aa		28.97	■■■□□ 2.23
LRCH3-208	ENST00000443727	PSME1	Q06323	249 aa		28.97	■■■□□ 2.23
LRCH3-208	ENST00000443727	NEUROD1	Q13562	356 aa		28.97	■■■□□ 2.23
LRCH3-208	ENST00000443727	SIN3A	Q96ST3	1273 aa		28.97	■■■□□ 2.23
LRCH3-208	ENST00000443727	ADGRB2	O60241	1585 aa		28.96	■■■□□ 2.23
LRCH3-208	ENST00000443727	WASL	O00401	505 aa	Predicted RBP	28.95	■■■□□ 2.22
LRCH3-208	ENST00000443727	PMFBP1	Q8TBY8	1022 aa		28.95	■■■□□ 2.22
LRCH3-208	ENST00000443727	L3MBTL2	Q969R5	705 aa		28.95	■■■□□ 2.22
LRCH3-208	ENST00000443727	SPATA31A3	Q5VYP0	1347 aa		28.94	■■■□□ 2.22
LRCH3-208	ENST00000443727	RGPD8	O14715	1765 aa	Predicted RBP	28.93	■■■□□ 2.22
LRCH3-208	ENST00000443727	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.93	■■■□□ 2.22
LRCH3-208	ENST00000443727	NBPF1	Q3BBV0	1214 aa		28.92	■■■□□ 2.22
LRCH3-208	ENST00000443727	QTRT2	Q9H974	415 aa	Known RBP	28.92	■■■□□ 2.22
LRCH3-208	ENST00000443727	KIAA1210	Q9ULL0	1709 aa		28.91	■■■□□ 2.22
LRCH3-208	ENST00000443727	TRIM26	Q12899	539 aa	Predicted RBP	28.9	■■■□□ 2.22
LRCH3-208	ENST00000443727	LMOD2	Q6P5Q4	547 aa		28.9	■■■□□ 2.22
LRCH3-208	ENST00000443727	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.9	■■■□□ 2.22
LRCH3-208	ENST00000443727	USP32	Q8NFA0	1604 aa		28.88	■■■□□ 2.21
LRCH3-208	ENST00000443727	HAP1	P54257	671 aa	Predicted RBP	28.88	■■■□□ 2.21
LRCH3-208	ENST00000443727	USP21	Q9UK80	565 aa		28.88	■■■□□ 2.21
LRCH3-208	ENST00000443727	TULP4	Q9NRJ4	1543 aa		28.88	■■■□□ 2.21
LRCH3-208	ENST00000443727	PRR36	Q9H6K5	1346 aa		28.87	■■■□□ 2.21
LRCH3-208	ENST00000443727	TNS3	Q68CZ2	1445 aa		28.86	■■■□□ 2.21
LRCH3-208	ENST00000443727	PLEKHG5	O94827	1062 aa		28.86	■■■□□ 2.21
LRCH3-208	ENST00000443727	RBM6	P78332	1123 aa	Known RBP	28.85	■■■□□ 2.21
LRCH3-208	ENST00000443727	SBNO1	A3KN83	1393 aa		28.85	■■■□□ 2.21
LRCH3-208	ENST00000443727	GPRASP1	Q5JY77	1395 aa		28.85	■■■□□ 2.21
LRCH3-208	ENST00000443727	FNBP4	Q8N3X1	1017 aa	Predicted RBP	28.84	■■■□□ 2.21
LRCH3-208	ENST00000443727	NGDN	Q8NEJ9	315 aa	Known RBP	28.84	■■■□□ 2.21
LRCH3-208	ENST00000443727	NUDT16	Q96DE0	195 aa	Known RBP	28.83	■■■□□ 2.21
LRCH3-208	ENST00000443727	CDK19	Q9BWU1	502 aa		28.83	■■■□□ 2.21
LRCH3-208	ENST00000443727	ARHGEF10	O15013	1369 aa		28.82	■■■□□ 2.2
LRCH3-208	ENST00000443727	TRPC5	Q9UL62	973 aa	Predicted RBP	28.81	■■■□□ 2.2
LRCH3-208	ENST00000443727	CDK12	Q9NYV4	1490 aa	Predicted RBP	28.79	■■■□□ 2.2
LRCH3-208	ENST00000443727	CENPJ	Q9HC77	1338 aa	Predicted RBP	28.79	■■■□□ 2.2
LRCH3-208	ENST00000443727	CABLES1	Q8TDN4	633 aa		28.79	■■■□□ 2.2
LRCH3-208	ENST00000443727	PAK3	O75914	559 aa	Predicted RBP	28.76	■■■□□ 2.19
LRCH3-208	ENST00000443727	ATP7B	P35670	1465 aa		28.75	■■■□□ 2.19
LRCH3-208	ENST00000443727	SRPK2	P78362	688 aa	Known RBP	28.74	■■■□□ 2.19
LRCH3-208	ENST00000443727	MARF1	Q9Y4F3	1742 aa	Known RBP	28.74	■■■□□ 2.19
LRCH3-208	ENST00000443727	ROCK2	O75116	1388 aa	Known RBP	28.74	■■■□□ 2.19
LRCH3-208	ENST00000443727	CCDC61	Q9Y6R9	512 aa		28.73	■■■□□ 2.19
LRCH3-208	ENST00000443727	ITSN1	Q15811	1721 aa		28.72	■■■□□ 2.19
LRCH3-208	ENST00000443727	RGS12	O14924	1447 aa		28.71	■■■□□ 2.19
LRCH3-208	ENST00000443727	ATRN	O75882	1429 aa		28.71	■■■□□ 2.19
LRCH3-208	ENST00000443727	BCL9L	Q86UU0	1499 aa		28.71	■■■□□ 2.19
LRCH3-208	ENST00000443727	UNC5CL	Q8IV45	518 aa		28.69	■■■□□ 2.18
LRCH3-208	ENST00000443727	TONSL	Q96HA7	1378 aa		28.69	■■■□□ 2.18
LRCH3-208	ENST00000443727	TRPM1	Q7Z4N2	1603 aa		28.69	■■■□□ 2.18
LRCH3-208	ENST00000443727	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.68	■■■□□ 2.18
LRCH3-208	ENST00000443727	CABP2	Q9NPB3	220 aa		28.67	■■■□□ 2.18
LRCH3-208	ENST00000443727	ACE	P12821	1306 aa		28.67	■■■□□ 2.18
LRCH3-208	ENST00000443727	NBPF8	Q3BBV2	869 aa		28.65	■■■□□ 2.18
LRCH3-208	ENST00000443727	GJD4	Q96KN9	370 aa	Predicted RBP	28.65	■■■□□ 2.18
LRCH3-208	ENST00000443727	QRICH2	Q9H0J4	1663 aa		28.64	■■■□□ 2.18
LRCH3-208	ENST00000443727	SLIT2	O94813	1529 aa		28.64	■■■□□ 2.18
LRCH3-208	ENST00000443727	PLEKHG3	A1L390	1219 aa		28.64	■■■□□ 2.18
LRCH3-208	ENST00000443727	UPF1	Q92900	1129 aa	Known RBP eCLIP	28.64	■■■□□ 2.18

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