RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 WAPLQ7Z5K2 1190 aa29.01■■■□□ 2.23
SHROOM1-204ENST00000440118 DDX17Q92841 729 aaKnown RBP29.01■■■□□ 2.23
SHROOM1-204ENST00000440118 LRP6O75581 1613 aa29.01■■■□□ 2.23
SHROOM1-204ENST00000440118 RGS17Q9UGC6 210 aaPredicted RBP29■■■□□ 2.23
SHROOM1-204ENST00000440118 LRRC59Q96AG4 307 aaKnown RBP28.99■■■□□ 2.23
SHROOM1-204ENST00000440118 KDM2AQ9Y2K7 1162 aa28.99■■■□□ 2.23
SHROOM1-204ENST00000440118 NUTM2BA6NNL0 878 aaPredicted RBP28.98■■■□□ 2.23
SHROOM1-204ENST00000440118 NUTM2EB1AL46 878 aaPredicted RBP28.98■■■□□ 2.23
SHROOM1-204ENST00000440118 NUTM2AQ8IVF1 878 aaPredicted RBP28.98■■■□□ 2.23
SHROOM1-204ENST00000440118 DCAF11Q8TEB1 546 aa28.98■■■□□ 2.23
SHROOM1-204ENST00000440118 PLEKHH1Q9ULM0 1364 aa28.98■■■□□ 2.23
SHROOM1-204ENST00000440118 ORAI2Q96SN7 254 aa28.97■■■□□ 2.23
SHROOM1-204ENST00000440118 FMN2Q9NZ56 1722 aa28.96■■■□□ 2.23
SHROOM1-204ENST00000440118 ESCO1Q5FWF5 840 aa28.95■■■□□ 2.22
SHROOM1-204ENST00000440118 NUTM2FA1L443 756 aa28.93■■■□□ 2.22
SHROOM1-204ENST00000440118 PNPLA6Q8IY17 1366 aa28.9■■■□□ 2.22
SHROOM1-204ENST00000440118 SAFB2Q14151 953 aaKnown RBP eCLIP28.9■■■□□ 2.22
SHROOM1-204ENST00000440118 POTEAQ6S8J7 498 aa28.9■■■□□ 2.22
SHROOM1-204ENST00000440118 POGKQ9P215 609 aa28.9■■■□□ 2.22
SHROOM1-204ENST00000440118 DLC1Q96QB1 1528 aa28.89■■■□□ 2.22
SHROOM1-204ENST00000440118 KIF1AQ12756 1690 aa28.89■■■□□ 2.21
SHROOM1-204ENST00000440118 NPHP3Q7Z494 1330 aa28.89■■■□□ 2.21
SHROOM1-204ENST00000440118 ADGRB1O14514 1584 aa28.88■■■□□ 2.21
SHROOM1-204ENST00000440118 SIRT1Q96EB6 747 aa28.88■■■□□ 2.21
SHROOM1-204ENST00000440118 STAC3Q96MF2 364 aa28.88■■■□□ 2.21
SHROOM1-204ENST00000440118 PRAM1Q96QH2 718 aa28.88■■■□□ 2.21
SHROOM1-204ENST00000440118 ZNF772Q68DY9 489 aaPredicted RBP28.86■■■□□ 2.21
SHROOM1-204ENST00000440118 SOS2Q07890 1332 aaPredicted RBP28.86■■■□□ 2.21
SHROOM1-204ENST00000440118 RGPD8O14715 1765 aaPredicted RBP28.85■■■□□ 2.21
SHROOM1-204ENST00000440118 TRAK1Q9UPV9 953 aa28.83■■■□□ 2.21
SHROOM1-204ENST00000440118 FOXO3O43524 673 aa28.82■■■□□ 2.2
SHROOM1-204ENST00000440118 XPCQ01831 940 aaPredicted RBP28.81■■■□□ 2.2
SHROOM1-204ENST00000440118 C8orf37Q96NL8 207 aa28.8■■■□□ 2.2
SHROOM1-204ENST00000440118 ADGRB2O60241 1585 aa28.79■■■□□ 2.2
SHROOM1-204ENST00000440118 PXDNQ92626 1479 aa28.79■■■□□ 2.2
SHROOM1-204ENST00000440118 COL22A1Q8NFW1 1626 aaPredicted RBP28.79■■■□□ 2.2
SHROOM1-204ENST00000440118 ARHGEF28Q8N1W1 1705 aaKnown RBP28.77■■■□□ 2.2
SHROOM1-204ENST00000440118 AFF2P51816 1311 aa28.77■■■□□ 2.2
SHROOM1-204ENST00000440118 ADAMTS2O95450 1211 aa28.77■■■□□ 2.2
SHROOM1-204ENST00000440118 KIAA1210Q9ULL0 1709 aa28.76■■■□□ 2.19
SHROOM1-204ENST00000440118 MINK1Q8N4C8 1332 aaPredicted RBP28.74■■■□□ 2.19
SHROOM1-204ENST00000440118 HIRIP3Q9BW71 556 aaPredicted RBP28.73■■■□□ 2.19
SHROOM1-204ENST00000440118 EIF3AQ14152 1382 aaKnown RBP28.73■■■□□ 2.19
SHROOM1-204ENST00000440118 PHF8Q9UPP1 1060 aa28.72■■■□□ 2.19
SHROOM1-204ENST00000440118 ANKARQ7Z5J8 1434 aa28.71■■■□□ 2.19
SHROOM1-204ENST00000440118 NGLY1Q96IV0 654 aa28.71■■■□□ 2.19
SHROOM1-204ENST00000440118 USP32Q8NFA0 1604 aa28.7■■■□□ 2.19
SHROOM1-204ENST00000440118 MARF1Q9Y4F3 1742 aaKnown RBP28.7■■■□□ 2.19
SHROOM1-204ENST00000440118 RXRBP28702 533 aa28.67■■■□□ 2.18
SHROOM1-204ENST00000440118 TULP4Q9NRJ4 1543 aa28.66■■■□□ 2.18
SHROOM1-204ENST00000440118 PSME1Q06323 249 aa28.66■■■□□ 2.18
SHROOM1-204ENST00000440118 KRT28Q7Z3Y7 464 aa28.66■■■□□ 2.18
SHROOM1-204ENST00000440118 ITSN1Q15811 1721 aa28.66■■■□□ 2.18
SHROOM1-204ENST00000440118 TNS3Q68CZ2 1445 aa28.63■■■□□ 2.17
SHROOM1-204ENST00000440118 PMFBP1Q8TBY8 1022 aa28.63■■■□□ 2.17
SHROOM1-204ENST00000440118 SPATA31A3Q5VYP0 1347 aa28.63■■■□□ 2.17
SHROOM1-204ENST00000440118 HAP1P54257 671 aaPredicted RBP28.62■■■□□ 2.17
SHROOM1-204ENST00000440118 WASLO00401 505 aaPredicted RBP28.61■■■□□ 2.17
SHROOM1-204ENST00000440118 NEUROD1Q13562 356 aa28.61■■■□□ 2.17
SHROOM1-204ENST00000440118 LMOD2Q6P5Q4 547 aa28.61■■■□□ 2.17
SHROOM1-204ENST00000440118 QTRT2Q9H974 415 aaKnown RBP28.6■■■□□ 2.17
SHROOM1-204ENST00000440118 USP21Q9UK80 565 aa28.6■■■□□ 2.17
SHROOM1-204ENST00000440118 PLEKHG5O94827 1062 aa28.59■■■□□ 2.17
SHROOM1-204ENST00000440118 SIN3AQ96ST3 1273 aa28.58■■■□□ 2.17
SHROOM1-204ENST00000440118 CDK12Q9NYV4 1490 aaPredicted RBP28.58■■■□□ 2.17
SHROOM1-204ENST00000440118 GPRASP1Q5JY77 1395 aa28.57■■■□□ 2.16
SHROOM1-204ENST00000440118 SBNO1A3KN83 1393 aa28.56■■■□□ 2.16
SHROOM1-204ENST00000440118 ARHGEF10O15013 1369 aa28.56■■■□□ 2.16
SHROOM1-204ENST00000440118 RBM6P78332 1123 aaKnown RBP28.56■■■□□ 2.16
SHROOM1-204ENST00000440118 L3MBTL2Q969R5 705 aa28.56■■■□□ 2.16
SHROOM1-204ENST00000440118 PRR36Q9H6K5 1346 aa28.55■■■□□ 2.16
SHROOM1-204ENST00000440118 NBPF1Q3BBV0 1214 aa28.55■■■□□ 2.16
SHROOM1-204ENST00000440118 ABCA3Q99758 1704 aa28.55■■■□□ 2.16
SHROOM1-204ENST00000440118 TRPM3Q9HCF6 1732 aaPredicted RBP28.53■■■□□ 2.16
SHROOM1-204ENST00000440118 NGDNQ8NEJ9 315 aaKnown RBP28.53■■■□□ 2.16
SHROOM1-204ENST00000440118 TRPC5Q9UL62 973 aaPredicted RBP28.53■■■□□ 2.16
SHROOM1-204ENST00000440118 QRICH2Q9H0J4 1663 aa28.53■■■□□ 2.16
SHROOM1-204ENST00000440118 ATP7BP35670 1465 aa28.53■■■□□ 2.16
SHROOM1-204ENST00000440118 TRPM1Q7Z4N2 1603 aa28.52■■■□□ 2.16
SHROOM1-204ENST00000440118 FNBP4Q8N3X1 1017 aaPredicted RBP28.51■■■□□ 2.15
SHROOM1-204ENST00000440118 TRIM26Q12899 539 aaPredicted RBP28.5■■■□□ 2.15
SHROOM1-204ENST00000440118 RGS12O14924 1447 aa28.5■■■□□ 2.15
SHROOM1-204ENST00000440118 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.49■■■□□ 2.15
SHROOM1-204ENST00000440118 TOPAZ1Q8N9V7 1692 aa28.48■■■□□ 2.15
SHROOM1-204ENST00000440118 CENPJQ9HC77 1338 aaPredicted RBP28.48■■■□□ 2.15
SHROOM1-204ENST00000440118 NUDT16Q96DE0 195 aaKnown RBP28.48■■■□□ 2.15
SHROOM1-204ENST00000440118 CDK19Q9BWU1 502 aa28.48■■■□□ 2.15
SHROOM1-204ENST00000440118 ALS2Q96Q42 1657 aa28.48■■■□□ 2.15
SHROOM1-204ENST00000440118 CABLES1Q8TDN4 633 aa28.47■■■□□ 2.15
SHROOM1-204ENST00000440118 ATRNO75882 1429 aa28.46■■■□□ 2.15
SHROOM1-204ENST00000440118 PLCH1Q4KWH8 1693 aa28.46■■■□□ 2.15
SHROOM1-204ENST00000440118 PAK3O75914 559 aaPredicted RBP28.46■■■□□ 2.15
SHROOM1-204ENST00000440118 ROCK2O75116 1388 aaKnown RBP28.45■■■□□ 2.14
SHROOM1-204ENST00000440118 BCL9LQ86UU0 1499 aa28.43■■■□□ 2.14
SHROOM1-204ENST00000440118 SRPK2P78362 688 aaKnown RBP28.43■■■□□ 2.14
SHROOM1-204ENST00000440118 NWD2Q9ULI1 1742 aa28.41■■■□□ 2.14
SHROOM1-204ENST00000440118 TONSLQ96HA7 1378 aa28.4■■■□□ 2.14
SHROOM1-204ENST00000440118 SLIT2O94813 1529 aa28.39■■■□□ 2.14
SHROOM1-204ENST00000440118 CCDC61Q9Y6R9 512 aa28.39■■■□□ 2.14
SHROOM1-204ENST00000440118 UNC5CLQ8IV45 518 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms