RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 LNPKQ9C0E8 428 aa17.65■□□□□ 0.42
PTPRU-204ENST00000428026 DZIP1LQ8IYY4 767 aaKnown RBP17.65■□□□□ 0.42
PTPRU-204ENST00000428026 DDX19BQ9UMR2 479 aa17.65■□□□□ 0.42
PTPRU-204ENST00000428026 EHBP1L1Q8N3D4 1523 aa17.65■□□□□ 0.42
PTPRU-204ENST00000428026 ANO2Q9NQ90 1003 aa17.65■□□□□ 0.42
PTPRU-204ENST00000428026 SLC26A8Q96RN1 970 aa17.64■□□□□ 0.41
PTPRU-204ENST00000428026 TPM1P09493 284 aa17.64■□□□□ 0.41
PTPRU-204ENST00000428026 RBM10P98175 930 aaKnown RBP17.64■□□□□ 0.41
PTPRU-204ENST00000428026 ARHGEF11O15085 1522 aa17.64■□□□□ 0.41
PTPRU-204ENST00000428026 EPRSP07814 1512 aaKnown RBP17.64■□□□□ 0.41
PTPRU-204ENST00000428026 PKNOX2Q96KN3 472 aa17.64■□□□□ 0.41
PTPRU-204ENST00000428026 POGZQ7Z3K3 1410 aa17.63■□□□□ 0.41
PTPRU-204ENST00000428026 C1orf141Q5JVX7 400 aa17.63■□□□□ 0.41
PTPRU-204ENST00000428026 MARCH6O60337 910 aa17.63■□□□□ 0.41
PTPRU-204ENST00000428026 ESCO1Q5FWF5 840 aa17.63■□□□□ 0.41
PTPRU-204ENST00000428026 PANK1Q8TE04 598 aa17.62■□□□□ 0.41
PTPRU-204ENST00000428026 TRAK2O60296 914 aa17.62■□□□□ 0.41
PTPRU-204ENST00000428026 FOSBP53539 338 aa17.62■□□□□ 0.41
PTPRU-204ENST00000428026 SYTL4Q96C24 671 aaPredicted RBP17.62■□□□□ 0.41
PTPRU-204ENST00000428026 NUCB2P80303 420 aa17.62■□□□□ 0.41
PTPRU-204ENST00000428026 CCDC70Q6NSX1 233 aa17.62■□□□□ 0.41
PTPRU-204ENST00000428026 STAC3Q96MF2 364 aa17.61■□□□□ 0.41
PTPRU-204ENST00000428026 ANKLE2Q86XL3 938 aa17.61■□□□□ 0.41
PTPRU-204ENST00000428026 VPS53Q5VIR6 699 aa17.61■□□□□ 0.41
PTPRU-204ENST00000428026 NECTIN2Q92692 538 aa17.6■□□□□ 0.41
PTPRU-204ENST00000428026 MIA2Q96PC5 1412 aa17.6■□□□□ 0.41
PTPRU-204ENST00000428026 ZKSCAN1P17029 563 aaPredicted RBP17.6■□□□□ 0.41
PTPRU-204ENST00000428026 PCMTD1Q96MG8 357 aaPredicted RBP17.6■□□□□ 0.41
PTPRU-204ENST00000428026 GTF2E1P29083 439 aaPredicted RBP17.59■□□□□ 0.41
PTPRU-204ENST00000428026 SLC52A1Q9NWF4 448 aa17.59■□□□□ 0.41
PTPRU-204ENST00000428026 SASS6Q6UVJ0 657 aa17.59■□□□□ 0.41
PTPRU-204ENST00000428026 MSH5O43196 834 aa17.59■□□□□ 0.41
PTPRU-204ENST00000428026 NLRP6P59044 892 aa17.59■□□□□ 0.41
PTPRU-204ENST00000428026 TMX4Q9H1E5 349 aaPredicted RBP17.59■□□□□ 0.41
PTPRU-204ENST00000428026 SMC3Q9UQE7 1217 aa17.59■□□□□ 0.41
PTPRU-204ENST00000428026 PRAM1Q96QH2 718 aa17.58■□□□□ 0.41
PTPRU-204ENST00000428026 MNS1Q8NEH6 495 aa17.58■□□□□ 0.41
PTPRU-204ENST00000428026 GGNBP2Q9H3C7 697 aa17.58■□□□□ 0.41
PTPRU-204ENST00000428026 CCDC39Q9UFE4 941 aa17.58■□□□□ 0.4
PTPRU-204ENST00000428026 CAVIN1Q6NZI2 390 aaKnown RBP17.58■□□□□ 0.4
PTPRU-204ENST00000428026 TEFQ10587 303 aa17.58■□□□□ 0.4
PTPRU-204ENST00000428026 WWC1Q8IX03 1113 aa17.57■□□□□ 0.4
PTPRU-204ENST00000428026 CUL7Q14999 1698 aa17.57■□□□□ 0.4
PTPRU-204ENST00000428026 AKAP17AQ02040 695 aaKnown RBP17.57■□□□□ 0.4
PTPRU-204ENST00000428026 RUFY2Q8WXA3 655 aa17.56■□□□□ 0.4
PTPRU-204ENST00000428026 INTS3Q68E01 1043 aaKnown RBP17.56■□□□□ 0.4
PTPRU-204ENST00000428026 EIF2S2P20042 333 aaKnown RBP17.56■□□□□ 0.4
PTPRU-204ENST00000428026 IPO7O95373 1038 aaKnown RBP17.56■□□□□ 0.4
PTPRU-204ENST00000428026 TPM2P07951 284 aa17.55■□□□□ 0.4
PTPRU-204ENST00000428026 NLRP2Q9NX02 1062 aa17.55■□□□□ 0.4
PTPRU-204ENST00000428026 DIAPH1O60610 1272 aaKnown RBP17.55■□□□□ 0.4
PTPRU-204ENST00000428026 RIPK4P57078 832 aa17.55■□□□□ 0.4
PTPRU-204ENST00000428026 RRBP1Q9P2E9 1410 aaKnown RBP17.55■□□□□ 0.4
PTPRU-204ENST00000428026 CEBPAP49715 358 aaPredicted RBP17.55■□□□□ 0.4
PTPRU-204ENST00000428026 ARGLU1Q9NWB6 273 aaPredicted RBP17.55■□□□□ 0.4
PTPRU-204ENST00000428026 NGEFQ8N5V2 710 aa17.54■□□□□ 0.4
PTPRU-204ENST00000428026 NBPF1Q3BBV0 1214 aa17.54■□□□□ 0.4
PTPRU-204ENST00000428026 ABTB2Q8N961 1025 aa17.54■□□□□ 0.4
PTPRU-204ENST00000428026 CDCA7LQ96GN5 454 aa17.54■□□□□ 0.4
PTPRU-204ENST00000428026 KIF7Q2M1P5 1343 aa17.54■□□□□ 0.4
PTPRU-204ENST00000428026 CPLX1O14810 134 aa17.53■□□□□ 0.4
PTPRU-204ENST00000428026 DAPK1P53355 1430 aa17.53■□□□□ 0.4
PTPRU-204ENST00000428026 PIP4K2BP78356 416 aa17.53■□□□□ 0.4
PTPRU-204ENST00000428026 IFIT2P09913 472 aaKnown RBP17.53■□□□□ 0.4
PTPRU-204ENST00000428026 ADGRL1O94910 1474 aa17.53■□□□□ 0.4
PTPRU-204ENST00000428026 TIAM1Q13009 1591 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 TRIM29Q14134 588 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 MAP7D2Q96T17 732 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 SYNE3Q6ZMZ3 975 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 TTC5Q8N0Z6 440 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
PTPRU-204ENST00000428026 GPRASP1Q5JY77 1395 aa17.52■□□□□ 0.4
PTPRU-204ENST00000428026 MPNDQ8N594 471 aa17.52■□□□□ 0.39
PTPRU-204ENST00000428026 C9orf78Q9NZ63 289 aaPredicted RBP17.52■□□□□ 0.39
PTPRU-204ENST00000428026 CCDC7Q96M83 1385 aa17.51■□□□□ 0.39
PTPRU-204ENST00000428026 CPLX2Q6PUV4 134 aaKnown RBP17.51■□□□□ 0.39
PTPRU-204ENST00000428026 CCDC27Q2M243 656 aa17.51■□□□□ 0.39
PTPRU-204ENST00000428026 API5Q9BZZ5 524 aaKnown RBP17.51■□□□□ 0.39
PTPRU-204ENST00000428026 RAPGEF4Q8WZA2 1011 aa17.5■□□□□ 0.39
PTPRU-204ENST00000428026 CHMP4CQ96CF2 233 aa17.5■□□□□ 0.39
PTPRU-204ENST00000428026 PRPF40AO75400 957 aaKnown RBP17.5■□□□□ 0.39
PTPRU-204ENST00000428026 CCDC73Q6ZRK6 1079 aa17.5■□□□□ 0.39
PTPRU-204ENST00000428026 MTERF4Q7Z6M4 381 aaKnown RBP17.5■□□□□ 0.39
PTPRU-204ENST00000428026 NUTM2BA6NNL0 878 aaPredicted RBP17.5■□□□□ 0.39
PTPRU-204ENST00000428026 NUTM2EB1AL46 878 aaPredicted RBP17.5■□□□□ 0.39
PTPRU-204ENST00000428026 NUTM2AQ8IVF1 878 aaPredicted RBP17.5■□□□□ 0.39
PTPRU-204ENST00000428026 HMOX1P09601 288 aa17.49■□□□□ 0.39
PTPRU-204ENST00000428026 HSP90B2PQ58FF3 399 aa17.49■□□□□ 0.39
PTPRU-204ENST00000428026 ANKRD20A12PQ8NF67 263 aa17.49■□□□□ 0.39
PTPRU-204ENST00000428026 APPP05067 770 aa17.49■□□□□ 0.39
PTPRU-204ENST00000428026 NOM1Q5C9Z4 860 aaKnown RBP17.49■□□□□ 0.39
PTPRU-204ENST00000428026 RUFY1Q96T51 708 aa17.49■□□□□ 0.39
PTPRU-204ENST00000428026 G3V3G9 751 aa17.48■□□□□ 0.39
PTPRU-204ENST00000428026 DCAF8Q5TAQ9 597 aa17.48■□□□□ 0.39
PTPRU-204ENST00000428026 HFM1A2PYH4 1435 aa17.48■□□□□ 0.39
PTPRU-204ENST00000428026 CDC45O75419 566 aa17.48■□□□□ 0.39
PTPRU-204ENST00000428026 FKBP5Q13451 457 aaPredicted RBP17.48■□□□□ 0.39
PTPRU-204ENST00000428026 RUNDC1Q96C34 613 aa17.47■□□□□ 0.39
PTPRU-204ENST00000428026 RNF20Q5VTR2 975 aa17.47■□□□□ 0.39
PTPRU-204ENST00000428026 PDILTQ8N807 584 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms