RNA–Protein interactions for RNA: ENST00000414411.3

DDB1-202, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,904 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-202ENST00000414411 KNDC1Q76NI1 1749 aa13.93□□□□□ -0.18
DDB1-202ENST00000414411 NWD1Q149M9 1564 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 ROBO2Q9HCK4 1378 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 ARHGEF28Q8N1W1 1705 aaKnown RBP13.92□□□□□ -0.18
DDB1-202ENST00000414411 ST20-MTHFSA0A0A6YYL1 179 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 HSPA5P11021 654 aaKnown RBP13.92□□□□□ -0.18
DDB1-202ENST00000414411 FAM135BQ49AJ0 1406 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 STRCP1A6NGW2 1772 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 CPS1P31327 1500 aa13.92□□□□□ -0.18
DDB1-202ENST00000414411 PTCH1Q13635 1447 aa13.91□□□□□ -0.18
DDB1-202ENST00000414411 WAPLQ7Z5K2 1190 aa13.91□□□□□ -0.18
DDB1-202ENST00000414411 PRAM1Q96QH2 718 aa13.91□□□□□ -0.18
DDB1-202ENST00000414411 GTF3C3Q9Y5Q9 886 aa13.91□□□□□ -0.18
DDB1-202ENST00000414411 EIF3AQ14152 1382 aaKnown RBP13.9□□□□□ -0.18
DDB1-202ENST00000414411 TESK2Q96S53 571 aa13.9□□□□□ -0.18
DDB1-202ENST00000414411 ZNF335Q9H4Z2 1342 aaPredicted RBP13.9□□□□□ -0.18
DDB1-202ENST00000414411 CENPJQ9HC77 1338 aaPredicted RBP13.89□□□□□ -0.19
DDB1-202ENST00000414411 PLEKHH1Q9ULM0 1364 aa13.89□□□□□ -0.19
DDB1-202ENST00000414411 HIRIP3Q9BW71 556 aaPredicted RBP13.89□□□□□ -0.19
DDB1-202ENST00000414411 SBNO2Q9Y2G9 1366 aa13.88□□□□□ -0.19
DDB1-202ENST00000414411 NKTRP30414 1462 aaKnown RBP13.88□□□□□ -0.19
DDB1-202ENST00000414411 POGKQ9P215 609 aa13.88□□□□□ -0.19
DDB1-202ENST00000414411 SAFB2Q14151 953 aaKnown RBP eCLIP13.86□□□□□ -0.19
DDB1-202ENST00000414411 PROSER2Q86WR7 435 aaPredicted RBP13.86□□□□□ -0.19
DDB1-202ENST00000414411 QRICH2Q9H0J4 1663 aa13.85□□□□□ -0.19
DDB1-202ENST00000414411 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.85□□□□□ -0.19
DDB1-202ENST00000414411 LTBP4Q8N2S1 1624 aa13.84□□□□□ -0.19
DDB1-202ENST00000414411 RBM33Q96EV2 1170 aaKnown RBP13.84□□□□□ -0.19
DDB1-202ENST00000414411 LRRC7Q96NW7 1537 aa13.83□□□□□ -0.2
DDB1-202ENST00000414411 NCOA3Q9Y6Q9 1424 aa13.83□□□□□ -0.2
DDB1-202ENST00000414411 TMEM94Q12767 1356 aa13.83□□□□□ -0.2
DDB1-202ENST00000414411 ARXQ96QS3 562 aa13.83□□□□□ -0.2
DDB1-202ENST00000414411 MINK1Q8N4C8 1332 aaPredicted RBP13.82□□□□□ -0.2
DDB1-202ENST00000414411 C11orf95C9JLR9 678 aaPredicted RBP13.82□□□□□ -0.2
DDB1-202ENST00000414411 XIRP1Q702N8 1843 aaKnown RBP13.82□□□□□ -0.2
DDB1-202ENST00000414411 TMF1P82094 1093 aa13.8□□□□□ -0.2
DDB1-202ENST00000414411 ADGRL3Q9HAR2 1447 aa13.8□□□□□ -0.2
DDB1-202ENST00000414411 ADGRB2O60241 1585 aa13.8□□□□□ -0.2
DDB1-202ENST00000414411 DISP3Q9P2K9 1392 aa13.8□□□□□ -0.2
DDB1-202ENST00000414411 WASLO00401 505 aaPredicted RBP13.8□□□□□ -0.2
DDB1-202ENST00000414411 C19orf44Q9H6X5 657 aa13.8□□□□□ -0.2
DDB1-202ENST00000414411 TULP4Q9NRJ4 1543 aa13.79□□□□□ -0.2
DDB1-202ENST00000414411 EVC2Q86UK5 1308 aa13.79□□□□□ -0.2
DDB1-202ENST00000414411 NALCNQ8IZF0 1738 aa13.79□□□□□ -0.2
DDB1-202ENST00000414411 PUS7Q96PZ0 661 aaKnown RBP13.79□□□□□ -0.2
DDB1-202ENST00000414411 CDK19Q9BWU1 502 aa13.78□□□□□ -0.2
DDB1-202ENST00000414411 KIF7Q2M1P5 1343 aa13.77□□□□□ -0.21
DDB1-202ENST00000414411 WASHC2AQ641Q2 1341 aa13.77□□□□□ -0.21
DDB1-202ENST00000414411 DDX10Q13206 875 aaKnown RBP13.76□□□□□ -0.21
DDB1-202ENST00000414411 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
DDB1-202ENST00000414411 CDC42BPGQ6DT37 1551 aa13.76□□□□□ -0.21
DDB1-202ENST00000414411 C14orf37Q86TY3 774 aa13.76□□□□□ -0.21
DDB1-202ENST00000414411 CCDC7Q96M83 1385 aa13.75□□□□□ -0.21
DDB1-202ENST00000414411 CABP2Q9NPB3 220 aa13.75□□□□□ -0.21
DDB1-202ENST00000414411 DCCP43146 1447 aa13.75□□□□□ -0.21
DDB1-202ENST00000414411 SRPK2P78362 688 aaKnown RBP13.74□□□□□ -0.21
DDB1-202ENST00000414411 PRR36Q9H6K5 1346 aa13.73□□□□□ -0.21
DDB1-202ENST00000414411 MSH6P52701 1360 aa13.73□□□□□ -0.21
DDB1-202ENST00000414411 FMN2Q9NZ56 1722 aa13.73□□□□□ -0.21
DDB1-202ENST00000414411 NUDT16Q96DE0 195 aaKnown RBP13.73□□□□□ -0.21
DDB1-202ENST00000414411 MYT1Q01538 1121 aa13.72□□□□□ -0.21
DDB1-202ENST00000414411 CADPS2Q86UW7 1296 aa13.72□□□□□ -0.21
DDB1-202ENST00000414411 PELP1Q8IZL8 1130 aaKnown RBP13.72□□□□□ -0.21
DDB1-202ENST00000414411 ATF3P18847 181 aa13.72□□□□□ -0.21
DDB1-202ENST00000414411 USP32Q8NFA0 1604 aa13.71□□□□□ -0.21
DDB1-202ENST00000414411 ATP7BP35670 1465 aa13.71□□□□□ -0.21
DDB1-202ENST00000414411 CCDC61Q9Y6R9 512 aa13.71□□□□□ -0.21
DDB1-202ENST00000414411 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.21
DDB1-202ENST00000414411 ANKARQ7Z5J8 1434 aa13.71□□□□□ -0.22
DDB1-202ENST00000414411 RGPD8O14715 1765 aaPredicted RBP13.71□□□□□ -0.22
DDB1-202ENST00000414411 NUTM2FA1L443 756 aa13.7□□□□□ -0.22
DDB1-202ENST00000414411 MST1RQ04912 1400 aa13.7□□□□□ -0.22
DDB1-202ENST00000414411 SLC12A5Q9H2X9 1139 aa13.69□□□□□ -0.22
DDB1-202ENST00000414411 PLEKHG3A1L390 1219 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 CERKQ8TCT0 537 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 CABP1Q9NZU7 370 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 SLAIN2Q9P270 581 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 IQSEC2Q5JU85 1478 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 C1orf167Q5SNV9 1468 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 POLR3GLQ9BT43 218 aa13.68□□□□□ -0.22
DDB1-202ENST00000414411 MYOM1P52179 1685 aa13.67□□□□□ -0.22
DDB1-202ENST00000414411 NINLQ9Y2I6 1382 aa13.67□□□□□ -0.22
DDB1-202ENST00000414411 TOPAZ1Q8N9V7 1692 aa13.67□□□□□ -0.22
DDB1-202ENST00000414411 PPIP5K1Q6PFW1 1433 aa13.66□□□□□ -0.22
DDB1-202ENST00000414411 TMC1Q8TDI8 760 aa13.66□□□□□ -0.22
DDB1-202ENST00000414411 ORAI2Q96SN7 254 aa13.66□□□□□ -0.22
DDB1-202ENST00000414411 CD163L1Q9NR16 1453 aa13.65□□□□□ -0.22
DDB1-202ENST00000414411 ITSN1Q15811 1721 aa13.65□□□□□ -0.22
DDB1-202ENST00000414411 ESCO1Q5FWF5 840 aa13.64□□□□□ -0.23
DDB1-202ENST00000414411 CCER2I3L3R5 266 aa13.64□□□□□ -0.23
DDB1-202ENST00000414411 ANP32CO43423 234 aa13.64□□□□□ -0.23
DDB1-202ENST00000414411 PHF8Q9UPP1 1060 aa13.64□□□□□ -0.23
DDB1-202ENST00000414411 CPSF1Q10570 1443 aaKnown RBP13.64□□□□□ -0.23
DDB1-202ENST00000414411 POLR3AO14802 1390 aaPredicted RBP13.63□□□□□ -0.23
DDB1-202ENST00000414411 PMFBP1Q8TBY8 1022 aa13.63□□□□□ -0.23
DDB1-202ENST00000414411 PANK3Q9H999 370 aa13.63□□□□□ -0.23
DDB1-202ENST00000414411 ACEP12821 1306 aa13.63□□□□□ -0.23
DDB1-202ENST00000414411 MYCNP04198 464 aaPredicted RBP13.62□□□□□ -0.23
DDB1-202ENST00000414411 CARD14Q9BXL6 1004 aa13.62□□□□□ -0.23
DDB1-202ENST00000414411 ANKRD36BQ8N2N9 1353 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 189.2 ms