RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 KIF1BO60333 1816 aa22.58■■□□□ 1.21
SDCBP-202ENST00000413219 FAM43AQ8N2R8 423 aa22.57■■□□□ 1.2
SDCBP-202ENST00000413219 ADGRF5Q8IZF2 1346 aa22.57■■□□□ 1.2
SDCBP-202ENST00000413219 PRKCSHP14314 528 aaPredicted RBP22.56■■□□□ 1.2
SDCBP-202ENST00000413219 UPF2Q9HAU5 1272 aaKnown RBP22.56■■□□□ 1.2
SDCBP-202ENST00000413219 MROH1Q8NDA8 1641 aa22.56■■□□□ 1.2
SDCBP-202ENST00000413219 USP32Q8NFA0 1604 aa22.56■■□□□ 1.2
SDCBP-202ENST00000413219 CCDC27Q2M243 656 aa22.56■■□□□ 1.2
SDCBP-202ENST00000413219 NSD3Q9BZ95 1437 aa22.54■■□□□ 1.2
SDCBP-202ENST00000413219 TBC1D32Q96NH3 1257 aa22.54■■□□□ 1.2
SDCBP-202ENST00000413219 EFCAB6Q5THR3 1501 aa22.54■■□□□ 1.2
SDCBP-202ENST00000413219 MORC1Q86VD1 984 aa22.53■■□□□ 1.2
SDCBP-202ENST00000413219 ANTXR1Q9H6X2 564 aa22.53■■□□□ 1.2
SDCBP-202ENST00000413219 UGGT1Q9NYU2 1555 aa22.52■■□□□ 1.2
SDCBP-202ENST00000413219 ABCA9Q8IUA7 1624 aa22.51■■□□□ 1.19
SDCBP-202ENST00000413219 TCP11L2Q8N4U5 519 aa22.51■■□□□ 1.19
SDCBP-202ENST00000413219 RWDD1Q9H446 243 aaPredicted RBP22.51■■□□□ 1.19
SDCBP-202ENST00000413219 KIF3BO15066 747 aa22.51■■□□□ 1.19
SDCBP-202ENST00000413219 PCDHB15Q9Y5E8 787 aa22.51■■□□□ 1.19
SDCBP-202ENST00000413219 ZC3H13Q5T200 1668 aaKnown RBP22.51■■□□□ 1.19
SDCBP-202ENST00000413219 LMTK2Q8IWU2 1503 aa22.5■■□□□ 1.19
SDCBP-202ENST00000413219 PDZRN3Q9UPQ7 1066 aa22.5■■□□□ 1.19
SDCBP-202ENST00000413219 ZNF518AQ6AHZ1 1483 aa22.49■■□□□ 1.19
SDCBP-202ENST00000413219 MROH2AA6NES4 1674 aa22.49■■□□□ 1.19
SDCBP-202ENST00000413219 L1TD1Q5T7N2 865 aaKnown RBP22.49■■□□□ 1.19
SDCBP-202ENST00000413219 FANCAO15360 1455 aa22.49■■□□□ 1.19
SDCBP-202ENST00000413219 POGKQ9P215 609 aa22.48■■□□□ 1.19
SDCBP-202ENST00000413219 ADGRB3O60242 1522 aa22.48■■□□□ 1.19
SDCBP-202ENST00000413219 RLBP1P12271 317 aa22.48■■□□□ 1.19
SDCBP-202ENST00000413219 ADGRL1O94910 1474 aa22.47■■□□□ 1.19
SDCBP-202ENST00000413219 MYH16Q9H6N6 1097 aa22.47■■□□□ 1.19
SDCBP-202ENST00000413219 CFAP53Q96M91 514 aa22.46■■□□□ 1.19
SDCBP-202ENST00000413219 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.46■■□□□ 1.19
SDCBP-202ENST00000413219 SLKQ9H2G2 1235 aaPredicted RBP22.46■■□□□ 1.19
SDCBP-202ENST00000413219 CT47B1P0C2W7 299 aaPredicted RBP22.45■■□□□ 1.18
SDCBP-202ENST00000413219 TBC1D2Q9BYX2 928 aa22.45■■□□□ 1.18
SDCBP-202ENST00000413219 RRP7AQ9Y3A4 280 aaKnown RBP22.45■■□□□ 1.18
SDCBP-202ENST00000413219 QRICH2Q9H0J4 1663 aa22.45■■□□□ 1.18
SDCBP-202ENST00000413219 PPRC1Q5VV67 1664 aaKnown RBP22.44■■□□□ 1.18
SDCBP-202ENST00000413219 NEUROD2Q15784 382 aa22.44■■□□□ 1.18
SDCBP-202ENST00000413219 PUS7Q96PZ0 661 aaKnown RBP22.44■■□□□ 1.18
SDCBP-202ENST00000413219 NSD2O96028 1365 aa22.44■■□□□ 1.18
SDCBP-202ENST00000413219 NOS1P29475 1434 aa22.44■■□□□ 1.18
SDCBP-202ENST00000413219 RSPH6AQ9H0K4 717 aa22.43■■□□□ 1.18
SDCBP-202ENST00000413219 MVPQ14764 893 aaKnown RBP22.43■■□□□ 1.18
SDCBP-202ENST00000413219 ADGRB2O60241 1585 aa22.42■■□□□ 1.18
SDCBP-202ENST00000413219 ADGRB1O14514 1584 aa22.42■■□□□ 1.18
SDCBP-202ENST00000413219 C14orf93Q9H972 538 aaKnown RBP22.41■■□□□ 1.18
SDCBP-202ENST00000413219 TNNQ9UQP3 1299 aa22.41■■□□□ 1.18
SDCBP-202ENST00000413219 MTHFSP49914 203 aa22.4■■□□□ 1.18
SDCBP-202ENST00000413219 SLC12A5Q9H2X9 1139 aa22.4■■□□□ 1.18
SDCBP-202ENST00000413219 ZKSCAN2Q63HK3 967 aa22.39■■□□□ 1.17
SDCBP-202ENST00000413219 PPLO60437 1756 aa22.39■■□□□ 1.17
SDCBP-202ENST00000413219 TNNT2P45379 298 aaPredicted RBP22.37■■□□□ 1.17
SDCBP-202ENST00000413219 DZIP1LQ8IYY4 767 aaKnown RBP22.37■■□□□ 1.17
SDCBP-202ENST00000413219 BCL2L13Q9BXK5 485 aa22.37■■□□□ 1.17
SDCBP-202ENST00000413219 TRAK1Q9UPV9 953 aa22.37■■□□□ 1.17
SDCBP-202ENST00000413219 RPGRIP1LQ68CZ1 1315 aa22.36■■□□□ 1.17
SDCBP-202ENST00000413219 HDAC1Q13547 482 aaPredicted RBP22.35■■□□□ 1.17
SDCBP-202ENST00000413219 ANKRD36BQ8N2N9 1353 aa22.35■■□□□ 1.17
SDCBP-202ENST00000413219 FTSJ3Q8IY81 847 aaKnown RBP22.34■■□□□ 1.17
SDCBP-202ENST00000413219 MCM4P33991 863 aa22.34■■□□□ 1.17
SDCBP-202ENST00000413219 CHMP5Q9NZZ3 219 aa22.34■■□□□ 1.17
SDCBP-202ENST00000413219 KIDINS220Q9ULH0 1771 aa22.33■■□□□ 1.17
SDCBP-202ENST00000413219 FSD2A1L4K1 749 aa22.32■■□□□ 1.16
SDCBP-202ENST00000413219 C22orf23Q9BZE7 217 aa22.32■■□□□ 1.16
SDCBP-202ENST00000413219 U2AF1L5P0DN76 240 aaPredicted RBP22.3■■□□□ 1.16
SDCBP-202ENST00000413219 U2AF1Q01081 240 aaKnown RBP eCLIP22.3■■□□□ 1.16
SDCBP-202ENST00000413219 DDX19BQ9UMR2 479 aa22.3■■□□□ 1.16
SDCBP-202ENST00000413219 EVC2Q86UK5 1308 aa22.3■■□□□ 1.16
SDCBP-202ENST00000413219 GOLGA6L3A6NEY3 463 aa22.29■■□□□ 1.16
SDCBP-202ENST00000413219 IL16Q14005 1332 aa22.29■■□□□ 1.16
SDCBP-202ENST00000413219 ABCC11Q96J66 1382 aa22.28■■□□□ 1.16
SDCBP-202ENST00000413219 TULP4Q9NRJ4 1543 aa22.28■■□□□ 1.16
SDCBP-202ENST00000413219 SMC5Q8IY18 1101 aa22.28■■□□□ 1.16
SDCBP-202ENST00000413219 NPATQ14207 1427 aa22.28■■□□□ 1.16
SDCBP-202ENST00000413219 GLI2P10070 1586 aa22.27■■□□□ 1.16
SDCBP-202ENST00000413219 SMC4Q9NTJ3 1288 aa22.27■■□□□ 1.16
SDCBP-202ENST00000413219 CHGAP10645 457 aaKnown RBP22.26■■□□□ 1.15
SDCBP-202ENST00000413219 TRIM27P14373 513 aa22.26■■□□□ 1.15
SDCBP-202ENST00000413219 XRCC6P12956 609 aaKnown RBP eCLIP22.25■■□□□ 1.15
SDCBP-202ENST00000413219 ATF7IPQ6VMQ6 1270 aa22.25■■□□□ 1.15
SDCBP-202ENST00000413219 ARHGEF28Q8N1W1 1705 aaKnown RBP22.25■■□□□ 1.15
SDCBP-202ENST00000413219 RRAGDQ9NQL2 400 aaPredicted RBP22.25■■□□□ 1.15
SDCBP-202ENST00000413219 MFAP1P55081 439 aaKnown RBP22.24■■□□□ 1.15
SDCBP-202ENST00000413219 EXOSC9Q06265 439 aaKnown RBP22.24■■□□□ 1.15
SDCBP-202ENST00000413219 PLEKHF1Q96S99 279 aa22.24■■□□□ 1.15
SDCBP-202ENST00000413219 CD109Q6YHK3 1445 aa22.24■■□□□ 1.15
SDCBP-202ENST00000413219 NCOA3Q9Y6Q9 1424 aa22.24■■□□□ 1.15
SDCBP-202ENST00000413219 EIF5BO60841 1220 aaKnown RBP22.24■■□□□ 1.15
SDCBP-202ENST00000413219 TMEM132EQ6IEE7 984 aa22.24■■□□□ 1.15
SDCBP-202ENST00000413219 HSCBQ8IWL3 235 aa22.23■■□□□ 1.15
SDCBP-202ENST00000413219 COL3A1P02461 1466 aaPredicted RBP22.23■■□□□ 1.15
SDCBP-202ENST00000413219 TMPOP42166 694 aaKnown RBP22.22■■□□□ 1.15
SDCBP-202ENST00000413219 SSH1Q8WYL5 1049 aa22.22■■□□□ 1.15
SDCBP-202ENST00000413219 TSR2Q969E8 191 aaKnown RBP22.22■■□□□ 1.15
SDCBP-202ENST00000413219 ISY1Q9ULR0 285 aaKnown RBP22.22■■□□□ 1.15
SDCBP-202ENST00000413219 DDX11L8A8MPP1 907 aa22.22■■□□□ 1.15
SDCBP-202ENST00000413219 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
SDCBP-202ENST00000413219 TRAK2O60296 914 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms