RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 CDC42BPGQ6DT37 1551 aa28.71■■■□□ 2.19
TSPAN4-209ENST00000409543 STAC3Q96MF2 364 aa28.7■■■□□ 2.18
TSPAN4-209ENST00000409543 DHX57Q6P158 1386 aaKnown RBP28.7■■■□□ 2.18
TSPAN4-209ENST00000409543 DCAF11Q8TEB1 546 aa28.68■■■□□ 2.18
TSPAN4-209ENST00000409543 LRRC59Q96AG4 307 aaKnown RBP28.68■■■□□ 2.18
TSPAN4-209ENST00000409543 ORAI2Q96SN7 254 aa28.68■■■□□ 2.18
TSPAN4-209ENST00000409543 PLEKHH1Q9ULM0 1364 aa28.67■■■□□ 2.18
TSPAN4-209ENST00000409543 DDX17Q92841 729 aaKnown RBP28.67■■■□□ 2.18
TSPAN4-209ENST00000409543 KDM2AQ9Y2K7 1162 aa28.65■■■□□ 2.18
TSPAN4-209ENST00000409543 LRP6O75581 1613 aa28.64■■■□□ 2.18
TSPAN4-209ENST00000409543 SOS2Q07890 1332 aaPredicted RBP28.6■■■□□ 2.17
TSPAN4-209ENST00000409543 ADGRB1O14514 1584 aa28.59■■■□□ 2.17
TSPAN4-209ENST00000409543 ESCO1Q5FWF5 840 aa28.59■■■□□ 2.17
TSPAN4-209ENST00000409543 MEX3CQ5U5Q3 659 aaKnown RBP28.59■■■□□ 2.17
TSPAN4-209ENST00000409543 POTEAQ6S8J7 498 aa28.59■■■□□ 2.17
TSPAN4-209ENST00000409543 DLC1Q96QB1 1528 aa28.58■■■□□ 2.17
TSPAN4-209ENST00000409543 PRAM1Q96QH2 718 aa28.57■■■□□ 2.16
TSPAN4-209ENST00000409543 PNPLA6Q8IY17 1366 aa28.57■■■□□ 2.16
TSPAN4-209ENST00000409543 NUTM2BA6NNL0 878 aaPredicted RBP28.56■■■□□ 2.16
TSPAN4-209ENST00000409543 NUTM2EB1AL46 878 aaPredicted RBP28.56■■■□□ 2.16
TSPAN4-209ENST00000409543 NUTM2AQ8IVF1 878 aaPredicted RBP28.56■■■□□ 2.16
TSPAN4-209ENST00000409543 FMN2Q9NZ56 1722 aa28.55■■■□□ 2.16
TSPAN4-209ENST00000409543 NPHP3Q7Z494 1330 aa28.54■■■□□ 2.16
TSPAN4-209ENST00000409543 NUTM2FA1L443 756 aa28.54■■■□□ 2.16
TSPAN4-209ENST00000409543 POGKQ9P215 609 aa28.53■■■□□ 2.16
TSPAN4-209ENST00000409543 TRAK1Q9UPV9 953 aa28.51■■■□□ 2.15
TSPAN4-209ENST00000409543 FOXO3O43524 673 aa28.5■■■□□ 2.15
TSPAN4-209ENST00000409543 SAFB2Q14151 953 aaKnown RBP eCLIP28.5■■■□□ 2.15
TSPAN4-209ENST00000409543 ZNF772Q68DY9 489 aaPredicted RBP28.49■■■□□ 2.15
TSPAN4-209ENST00000409543 PXDNQ92626 1479 aa28.47■■■□□ 2.15
TSPAN4-209ENST00000409543 KIF1AQ12756 1690 aa28.45■■■□□ 2.14
TSPAN4-209ENST00000409543 ADGRB2O60241 1585 aa28.43■■■□□ 2.14
TSPAN4-209ENST00000409543 XPCQ01831 940 aaPredicted RBP28.42■■■□□ 2.14
TSPAN4-209ENST00000409543 COL22A1Q8NFW1 1626 aaPredicted RBP28.41■■■□□ 2.14
TSPAN4-209ENST00000409543 PHF8Q9UPP1 1060 aa28.41■■■□□ 2.14
TSPAN4-209ENST00000409543 RGPD8O14715 1765 aaPredicted RBP28.41■■■□□ 2.14
TSPAN4-209ENST00000409543 KIAA1210Q9ULL0 1709 aa28.4■■■□□ 2.14
TSPAN4-209ENST00000409543 ANKARQ7Z5J8 1434 aa28.4■■■□□ 2.14
TSPAN4-209ENST00000409543 AFF2P51816 1311 aa28.4■■■□□ 2.14
TSPAN4-209ENST00000409543 C8orf37Q96NL8 207 aa28.39■■■□□ 2.14
TSPAN4-209ENST00000409543 MINK1Q8N4C8 1332 aaPredicted RBP28.39■■■□□ 2.13
TSPAN4-209ENST00000409543 ADAMTS2O95450 1211 aa28.37■■■□□ 2.13
TSPAN4-209ENST00000409543 HIRIP3Q9BW71 556 aaPredicted RBP28.37■■■□□ 2.13
TSPAN4-209ENST00000409543 KRT28Q7Z3Y7 464 aa28.36■■■□□ 2.13
TSPAN4-209ENST00000409543 EIF3AQ14152 1382 aaKnown RBP28.36■■■□□ 2.13
TSPAN4-209ENST00000409543 ARHGEF28Q8N1W1 1705 aaKnown RBP28.35■■■□□ 2.13
TSPAN4-209ENST00000409543 USP32Q8NFA0 1604 aa28.35■■■□□ 2.13
TSPAN4-209ENST00000409543 WASLO00401 505 aaPredicted RBP28.34■■■□□ 2.13
TSPAN4-209ENST00000409543 NGLY1Q96IV0 654 aa28.34■■■□□ 2.13
TSPAN4-209ENST00000409543 SIN3AQ96ST3 1273 aa28.34■■■□□ 2.13
TSPAN4-209ENST00000409543 SPATA31A3Q5VYP0 1347 aa28.34■■■□□ 2.13
TSPAN4-209ENST00000409543 PSME1Q06323 249 aa28.33■■■□□ 2.13
TSPAN4-209ENST00000409543 L3MBTL2Q969R5 705 aa28.33■■■□□ 2.13
TSPAN4-209ENST00000409543 RXRBP28702 533 aa28.32■■■□□ 2.12
TSPAN4-209ENST00000409543 NBPF1Q3BBV0 1214 aa28.32■■■□□ 2.12
TSPAN4-209ENST00000409543 TULP4Q9NRJ4 1543 aa28.3■■■□□ 2.12
TSPAN4-209ENST00000409543 PMFBP1Q8TBY8 1022 aa28.29■■■□□ 2.12
TSPAN4-209ENST00000409543 PRR36Q9H6K5 1346 aa28.28■■■□□ 2.12
TSPAN4-209ENST00000409543 TRIM26Q12899 539 aaPredicted RBP28.28■■■□□ 2.12
TSPAN4-209ENST00000409543 NEUROD1Q13562 356 aa28.28■■■□□ 2.12
TSPAN4-209ENST00000409543 SBNO1A3KN83 1393 aa28.27■■■□□ 2.12
TSPAN4-209ENST00000409543 QTRT2Q9H974 415 aaKnown RBP28.27■■■□□ 2.12
TSPAN4-209ENST00000409543 TNS3Q68CZ2 1445 aa28.26■■■□□ 2.12
TSPAN4-209ENST00000409543 FNBP4Q8N3X1 1017 aaPredicted RBP28.26■■■□□ 2.11
TSPAN4-209ENST00000409543 CDK12Q9NYV4 1490 aaPredicted RBP28.24■■■□□ 2.11
TSPAN4-209ENST00000409543 USP21Q9UK80 565 aa28.23■■■□□ 2.11
TSPAN4-209ENST00000409543 RBM6P78332 1123 aaKnown RBP28.22■■■□□ 2.11
TSPAN4-209ENST00000409543 MARF1Q9Y4F3 1742 aaKnown RBP28.22■■■□□ 2.11
TSPAN4-209ENST00000409543 CDK19Q9BWU1 502 aa28.21■■■□□ 2.11
TSPAN4-209ENST00000409543 ARHGEF10O15013 1369 aa28.21■■■□□ 2.11
TSPAN4-209ENST00000409543 NUDT16Q96DE0 195 aaKnown RBP28.2■■■□□ 2.1
TSPAN4-209ENST00000409543 GPRASP1Q5JY77 1395 aa28.2■■■□□ 2.1
TSPAN4-209ENST00000409543 ATP7BP35670 1465 aa28.19■■■□□ 2.1
TSPAN4-209ENST00000409543 TRPC5Q9UL62 973 aaPredicted RBP28.18■■■□□ 2.1
TSPAN4-209ENST00000409543 LMOD2Q6P5Q4 547 aa28.17■■■□□ 2.1
TSPAN4-209ENST00000409543 NGDNQ8NEJ9 315 aaKnown RBP28.17■■■□□ 2.1
TSPAN4-209ENST00000409543 ITSN1Q15811 1721 aa28.17■■■□□ 2.1
TSPAN4-209ENST00000409543 CENPJQ9HC77 1338 aaPredicted RBP28.17■■■□□ 2.1
TSPAN4-209ENST00000409543 TRPM3Q9HCF6 1732 aaPredicted RBP28.15■■■□□ 2.1
TSPAN4-209ENST00000409543 TRPM1Q7Z4N2 1603 aa28.15■■■□□ 2.1
TSPAN4-209ENST00000409543 BCL9LQ86UU0 1499 aa28.15■■■□□ 2.1
TSPAN4-209ENST00000409543 HAP1P54257 671 aaPredicted RBP28.14■■■□□ 2.1
TSPAN4-209ENST00000409543 CABLES1Q8TDN4 633 aa28.14■■■□□ 2.1
TSPAN4-209ENST00000409543 ATRNO75882 1429 aa28.13■■■□□ 2.09
TSPAN4-209ENST00000409543 CCDC61Q9Y6R9 512 aa28.13■■■□□ 2.09
TSPAN4-209ENST00000409543 RGS12O14924 1447 aa28.1■■■□□ 2.09
TSPAN4-209ENST00000409543 ALS2Q96Q42 1657 aa28.1■■■□□ 2.09
TSPAN4-209ENST00000409543 ROCK2O75116 1388 aaKnown RBP28.1■■■□□ 2.09
TSPAN4-209ENST00000409543 SLIT2O94813 1529 aa28.09■■■□□ 2.09
TSPAN4-209ENST00000409543 PLEKHG5O94827 1062 aa28.09■■■□□ 2.09
TSPAN4-209ENST00000409543 TOPAZ1Q8N9V7 1692 aa28.09■■■□□ 2.09
TSPAN4-209ENST00000409543 ABCA3Q99758 1704 aa28.09■■■□□ 2.09
TSPAN4-209ENST00000409543 QRICH2Q9H0J4 1663 aa28.08■■■□□ 2.09
TSPAN4-209ENST00000409543 PLEKHG3A1L390 1219 aa28.08■■■□□ 2.09
TSPAN4-209ENST00000409543 NBPF8Q3BBV2 869 aa28.07■■■□□ 2.08
TSPAN4-209ENST00000409543 UNC5CLQ8IV45 518 aa28.07■■■□□ 2.08
TSPAN4-209ENST00000409543 POLR3AO14802 1390 aaPredicted RBP28.07■■■□□ 2.08
TSPAN4-209ENST00000409543 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.06■■■□□ 2.08
TSPAN4-209ENST00000409543 PAK3O75914 559 aaPredicted RBP28.06■■■□□ 2.08
TSPAN4-209ENST00000409543 SRPK2P78362 688 aaKnown RBP28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms