RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 TSR1Q2NL82 804 aaKnown RBP21.31■■□□□ 1
SMPD4-202ENST00000409031 GGT6Q6P531 493 aa21.31■■□□□ 1
SMPD4-202ENST00000409031 KIF3BO15066 747 aa21.3■■□□□ 1
SMPD4-202ENST00000409031 PRXQ9BXM0 1461 aa21.3■■□□□ 1
SMPD4-202ENST00000409031 RNF20Q5VTR2 975 aa21.3■■□□□ 1
SMPD4-202ENST00000409031 HDGFP51858 240 aaKnown RBP21.3■■□□□ 1
SMPD4-202ENST00000409031 NAT10Q9H0A0 1025 aaKnown RBP21.3■■□□□ 1
SMPD4-202ENST00000409031 C20orf194Q5TEA3 1177 aa21.29■■□□□ 1
SMPD4-202ENST00000409031 CCDC192P0DO97 292 aa21.29■■□□□ 1
SMPD4-202ENST00000409031 XPCQ01831 940 aaPredicted RBP21.29■■□□□ 1
SMPD4-202ENST00000409031 PRDM10Q9NQV6 1147 aa21.29■■□□□ 1
SMPD4-202ENST00000409031 WDR63Q8IWG1 891 aa21.29■■□□□ 1
SMPD4-202ENST00000409031 WDR33Q9C0J8 1336 aaKnown RBP21.28■■□□□ 1
SMPD4-202ENST00000409031 ANKRD50Q9ULJ7 1429 aa21.28■■□□□ 1
SMPD4-202ENST00000409031 NCOA1Q15788 1441 aa21.28■■□□□ 1
SMPD4-202ENST00000409031 PLEKHH2Q8IVE3 1493 aa21.28■■□□□ 1
SMPD4-202ENST00000409031 SPC24Q8NBT2 197 aa21.27■■□□□ 1
SMPD4-202ENST00000409031 TIAM1Q13009 1591 aa21.27■■□□□ 1
SMPD4-202ENST00000409031 CBX1P83916 185 aa21.27■■□□□ 1
SMPD4-202ENST00000409031 APPP05067 770 aa21.27■□□□□ 0.99
SMPD4-202ENST00000409031 CCP110O43303 1012 aa21.26■□□□□ 0.99
SMPD4-202ENST00000409031 EXOSC9Q06265 439 aaKnown RBP21.26■□□□□ 0.99
SMPD4-202ENST00000409031 TNPO1Q92973 898 aaKnown RBP21.26■□□□□ 0.99
SMPD4-202ENST00000409031 PDCP20941 246 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 DHX8Q14562 1220 aaKnown RBP21.25■□□□□ 0.99
SMPD4-202ENST00000409031 CHD1LQ86WJ1 897 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 MPNDQ8N594 471 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 AK7Q96M32 723 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 ZNF644Q9H582 1327 aaPredicted RBP21.25■□□□□ 0.99
SMPD4-202ENST00000409031 LEKR1Q6ZMV7 388 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 CREBRFQ8IUR6 639 aa21.25■□□□□ 0.99
SMPD4-202ENST00000409031 FIBPO43427 364 aa21.24■□□□□ 0.99
SMPD4-202ENST00000409031 ATF7IPQ6VMQ6 1270 aa21.24■□□□□ 0.99
SMPD4-202ENST00000409031 BCL11BQ9C0K0 894 aaPredicted RBP21.24■□□□□ 0.99
SMPD4-202ENST00000409031 TSPYL1Q9H0U9 437 aa21.24■□□□□ 0.99
SMPD4-202ENST00000409031 SYCE3A1L190 88 aa21.23■□□□□ 0.99
SMPD4-202ENST00000409031 KIAA1107Q9UPP5 1409 aa21.23■□□□□ 0.99
SMPD4-202ENST00000409031 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.23■□□□□ 0.99
SMPD4-202ENST00000409031 TBC1D32Q96NH3 1257 aa21.23■□□□□ 0.99
SMPD4-202ENST00000409031 MTHFSP49914 203 aa21.22■□□□□ 0.99
SMPD4-202ENST00000409031 IPO7O95373 1038 aaKnown RBP21.22■□□□□ 0.99
SMPD4-202ENST00000409031 ERCC4Q92889 916 aaPredicted RBP21.22■□□□□ 0.99
SMPD4-202ENST00000409031 GORABQ5T7V8 394 aa21.22■□□□□ 0.99
SMPD4-202ENST00000409031 ZHX1Q9UKY1 873 aaPredicted RBP21.22■□□□□ 0.99
SMPD4-202ENST00000409031 NAIPQ13075 1403 aa21.22■□□□□ 0.99
SMPD4-202ENST00000409031 ERC2O15083 957 aa21.21■□□□□ 0.99
SMPD4-202ENST00000409031 HOOK1Q9UJC3 728 aaKnown RBP21.21■□□□□ 0.99
SMPD4-202ENST00000409031 CPLX2Q6PUV4 134 aaKnown RBP21.21■□□□□ 0.99
SMPD4-202ENST00000409031 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.2■□□□□ 0.98
SMPD4-202ENST00000409031 CCDC27Q2M243 656 aa21.2■□□□□ 0.98
SMPD4-202ENST00000409031 SDF4Q9BRK5 362 aa21.2■□□□□ 0.98
SMPD4-202ENST00000409031 TULP1O00294 542 aaPredicted RBP21.2■□□□□ 0.98
SMPD4-202ENST00000409031 HSP90AB4PQ58FF6 505 aa21.2■□□□□ 0.98
SMPD4-202ENST00000409031 PRIMPOLQ96LW4 560 aa21.2■□□□□ 0.98
SMPD4-202ENST00000409031 NOB1Q9ULX3 412 aaKnown RBP21.2■□□□□ 0.98
SMPD4-202ENST00000409031 SCAPERQ9BY12 1400 aa21.19■□□□□ 0.98
SMPD4-202ENST00000409031 PANK2Q9BZ23 570 aa21.19■□□□□ 0.98
SMPD4-202ENST00000409031 KLHL40Q2TBA0 621 aa21.19■□□□□ 0.98
SMPD4-202ENST00000409031 NPHP1O15259 732 aa21.18■□□□□ 0.98
SMPD4-202ENST00000409031 CALRP27797 417 aaKnown RBP21.18■□□□□ 0.98
SMPD4-202ENST00000409031 CALCOCO1Q9P1Z2 691 aa21.18■□□□□ 0.98
SMPD4-202ENST00000409031 CFTRP13569 1480 aa21.18■□□□□ 0.98
SMPD4-202ENST00000409031 A0A0G2JS52 829 aa21.17■□□□□ 0.98
SMPD4-202ENST00000409031 NBPF1Q3BBV0 1214 aa21.17■□□□□ 0.98
SMPD4-202ENST00000409031 LMOD2Q6P5Q4 547 aa21.17■□□□□ 0.98
SMPD4-202ENST00000409031 IFIT2P09913 472 aaKnown RBP21.17■□□□□ 0.98
SMPD4-202ENST00000409031 ANKRD20A12PQ8NF67 263 aa21.17■□□□□ 0.98
SMPD4-202ENST00000409031 SYNJ1O43426 1573 aa21.17■□□□□ 0.98
SMPD4-202ENST00000409031 LRPPRCP42704 1394 aaKnown RBP21.17■□□□□ 0.98
SMPD4-202ENST00000409031 PES1O00541 588 aaKnown RBP21.17■□□□□ 0.98
SMPD4-202ENST00000409031 RASSF8Q8NHQ8 419 aa21.16■□□□□ 0.98
SMPD4-202ENST00000409031 KINO60870 393 aaKnown RBP21.16■□□□□ 0.98
SMPD4-202ENST00000409031 PSMA5P28066 241 aa21.16■□□□□ 0.98
SMPD4-202ENST00000409031 RUFY1Q96T51 708 aa21.15■□□□□ 0.98
SMPD4-202ENST00000409031 H0YHG0 523 aa21.15■□□□□ 0.98
SMPD4-202ENST00000409031 AEBP1Q8IUX7 1158 aa21.15■□□□□ 0.98
SMPD4-202ENST00000409031 CGNQ9P2M7 1197 aaKnown RBP21.15■□□□□ 0.98
SMPD4-202ENST00000409031 SSFA2P28290 1259 aa21.14■□□□□ 0.98
SMPD4-202ENST00000409031 VGFO15240 615 aaPredicted RBP21.14■□□□□ 0.97
SMPD4-202ENST00000409031 DUSP27Q5VZP5 1158 aa21.14■□□□□ 0.97
SMPD4-202ENST00000409031 WWC1Q8IX03 1113 aa21.14■□□□□ 0.97
SMPD4-202ENST00000409031 TNMDQ9H2S6 317 aa21.14■□□□□ 0.97
SMPD4-202ENST00000409031 C8orf34Q49A92 452 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 COG3Q96JB2 828 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.13■□□□□ 0.97
SMPD4-202ENST00000409031 KRT85P78386 507 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 NKTRP30414 1462 aaKnown RBP21.13■□□□□ 0.97
SMPD4-202ENST00000409031 ERICH4A6NGS2 130 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 KIF2AO00139 706 aaPredicted RBP21.13■□□□□ 0.97
SMPD4-202ENST00000409031 CPLX1O14810 134 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 FKBP5Q13451 457 aaPredicted RBP21.13■□□□□ 0.97
SMPD4-202ENST00000409031 FBXW7Q969H0 707 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 MAP3K1Q13233 1512 aa21.13■□□□□ 0.97
SMPD4-202ENST00000409031 OFD1O75665 1012 aa21.12■□□□□ 0.97
SMPD4-202ENST00000409031 PPP4R3BQ5MIZ7 849 aa21.12■□□□□ 0.97
SMPD4-202ENST00000409031 HS1BP3Q53T59 392 aa21.12■□□□□ 0.97
SMPD4-202ENST00000409031 RDXP35241 583 aaKnown RBP21.12■□□□□ 0.97
SMPD4-202ENST00000409031 TSR2Q969E8 191 aaKnown RBP21.12■□□□□ 0.97
SMPD4-202ENST00000409031 RRAGDQ9NQL2 400 aaPredicted RBP21.12■□□□□ 0.97
SMPD4-202ENST00000409031 SYNE3Q6ZMZ3 975 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms