RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 GBP4Q96PP9 640 aa23.18■■□□□ 1.3
USP48-204ENST00000400301 NOS1P29475 1434 aa23.18■■□□□ 1.3
USP48-204ENST00000400301 FOXD4L1Q9NU39 408 aa23.18■■□□□ 1.3
USP48-204ENST00000400301 CDK19Q9BWU1 502 aa23.17■■□□□ 1.3
USP48-204ENST00000400301 TPRNQ4KMQ1 711 aa23.17■■□□□ 1.3
USP48-204ENST00000400301 GNAI1P63096 354 aa23.16■■□□□ 1.3
USP48-204ENST00000400301 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
USP48-204ENST00000400301 HMMRO75330 724 aa23.15■■□□□ 1.3
USP48-204ENST00000400301 NKTRP30414 1462 aaKnown RBP23.15■■□□□ 1.3
USP48-204ENST00000400301 LTV1Q96GA3 475 aaPredicted RBP23.14■■□□□ 1.3
USP48-204ENST00000400301 ABCC10Q5T3U5 1492 aa23.14■■□□□ 1.3
USP48-204ENST00000400301 NINLQ9Y2I6 1382 aa23.14■■□□□ 1.29
USP48-204ENST00000400301 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.14■■□□□ 1.29
USP48-204ENST00000400301 C14orf93Q9H972 538 aaKnown RBP23.14■■□□□ 1.29
USP48-204ENST00000400301 COL17A1Q9UMD9 1497 aaPredicted RBP23.14■■□□□ 1.29
USP48-204ENST00000400301 API5Q9BZZ5 524 aaKnown RBP23.13■■□□□ 1.29
USP48-204ENST00000400301 MCCP23508 829 aa23.12■■□□□ 1.29
USP48-204ENST00000400301 RARSP54136 660 aaKnown RBP23.12■■□□□ 1.29
USP48-204ENST00000400301 IDI1Q13907 227 aa23.12■■□□□ 1.29
USP48-204ENST00000400301 DENND4BO75064 1496 aaPredicted RBP23.11■■□□□ 1.29
USP48-204ENST00000400301 C22orf23Q9BZE7 217 aa23.11■■□□□ 1.29
USP48-204ENST00000400301 NOB1Q9ULX3 412 aaKnown RBP23.11■■□□□ 1.29
USP48-204ENST00000400301 MBD5Q9P267 1494 aa23.11■■□□□ 1.29
USP48-204ENST00000400301 TRHP20396 242 aaPredicted RBP23.11■■□□□ 1.29
USP48-204ENST00000400301 ADGBQ8N7X0 1667 aa23.1■■□□□ 1.29
USP48-204ENST00000400301 MVPQ14764 893 aaKnown RBP23.1■■□□□ 1.29
USP48-204ENST00000400301 GOLGA6L3A6NEY3 463 aa23.09■■□□□ 1.29
USP48-204ENST00000400301 RNF123Q5XPI4 1314 aa23.09■■□□□ 1.29
USP48-204ENST00000400301 ASXL1Q8IXJ9 1541 aa23.09■■□□□ 1.29
USP48-204ENST00000400301 ATAD2Q6PL18 1390 aa23.09■■□□□ 1.29
USP48-204ENST00000400301 TMPOP42166 694 aaKnown RBP23.09■■□□□ 1.29
USP48-204ENST00000400301 ATF7IPQ6VMQ6 1270 aa23.08■■□□□ 1.29
USP48-204ENST00000400301 TXNDC2Q86VQ3 553 aa23.08■■□□□ 1.29
USP48-204ENST00000400301 PLEKHH1Q9ULM0 1364 aa23.08■■□□□ 1.28
USP48-204ENST00000400301 GPRASP1Q5JY77 1395 aa23.07■■□□□ 1.28
USP48-204ENST00000400301 CT47B1P0C2W7 299 aaPredicted RBP23.07■■□□□ 1.28
USP48-204ENST00000400301 FRAT2O75474 233 aaPredicted RBP23.07■■□□□ 1.28
USP48-204ENST00000400301 EIF2AK4Q9P2K8 1649 aaKnown RBP23.07■■□□□ 1.28
USP48-204ENST00000400301 ABCC2Q92887 1545 aa23.07■■□□□ 1.28
USP48-204ENST00000400301 KCNJ4P48050 445 aa23.05■■□□□ 1.28
USP48-204ENST00000400301 NAP1L5Q96NT1 182 aaPredicted RBP23.05■■□□□ 1.28
USP48-204ENST00000400301 TRIM6-TRIM34B2RNG4 842 aa23.04■■□□□ 1.28
USP48-204ENST00000400301 CARD14Q9BXL6 1004 aa23.04■■□□□ 1.28
USP48-204ENST00000400301 ABCA8O94911 1581 aa23.04■■□□□ 1.28
USP48-204ENST00000400301 CHMP5Q9NZZ3 219 aa23.03■■□□□ 1.28
USP48-204ENST00000400301 PTMAP06454 111 aaKnown RBP23.02■■□□□ 1.28
USP48-204ENST00000400301 C1orf115Q9H7X2 142 aa23.01■■□□□ 1.27
USP48-204ENST00000400301 ASXL2Q76L83 1435 aa23.01■■□□□ 1.27
USP48-204ENST00000400301 ARHGEF5Q12774 1597 aa23.01■■□□□ 1.27
USP48-204ENST00000400301 WDR7Q9Y4E6 1490 aa23.01■■□□□ 1.27
USP48-204ENST00000400301 TWISTNBQ3B726 338 aaPredicted RBP23■■□□□ 1.27
USP48-204ENST00000400301 FBXO31Q5XUX0 539 aaPredicted RBP23■■□□□ 1.27
USP48-204ENST00000400301 WAPLQ7Z5K2 1190 aa23■■□□□ 1.27
USP48-204ENST00000400301 PTMSP20962 102 aa23■■□□□ 1.27
USP48-204ENST00000400301 RTEL1-TNFRSF6BF6WH68 1400 aa23■■□□□ 1.27
USP48-204ENST00000400301 FCHSD2O94868 740 aa22.99■■□□□ 1.27
USP48-204ENST00000400301 SSH1Q8WYL5 1049 aa22.99■■□□□ 1.27
USP48-204ENST00000400301 KDM5CP41229 1560 aa22.99■■□□□ 1.27
USP48-204ENST00000400301 DDX11L8A8MPP1 907 aa22.99■■□□□ 1.27
USP48-204ENST00000400301 IGHDP01880 384 aa22.99■■□□□ 1.27
USP48-204ENST00000400301 PIK3C2GO75747 1445 aa22.97■■□□□ 1.27
USP48-204ENST00000400301 NECTIN2Q92692 538 aa22.97■■□□□ 1.27
USP48-204ENST00000400301 KIAA1211Q6ZU35 1233 aa22.97■■□□□ 1.27
USP48-204ENST00000400301 ST18O60284 1047 aa22.96■■□□□ 1.27
USP48-204ENST00000400301 TMEM57Q8N5G2 664 aa22.96■■□□□ 1.27
USP48-204ENST00000400301 THUMPD2Q9BTF0 503 aaKnown RBP22.96■■□□□ 1.27
USP48-204ENST00000400301 SPINK5Q9NQ38 1064 aaPredicted RBP22.96■■□□□ 1.27
USP48-204ENST00000400301 NOL8Q76FK4 1167 aaKnown RBP22.95■■□□□ 1.26
USP48-204ENST00000400301 TSPYL4Q9UJ04 414 aa22.95■■□□□ 1.26
USP48-204ENST00000400301 RRS1Q15050 365 aaKnown RBP22.95■■□□□ 1.26
USP48-204ENST00000400301 MAST1Q9Y2H9 1570 aa22.95■■□□□ 1.26
USP48-204ENST00000400301 CHMP4AQ9BY43 222 aa22.94■■□□□ 1.26
USP48-204ENST00000400301 A0A0G2JS52 829 aa22.94■■□□□ 1.26
USP48-204ENST00000400301 SULT6B1Q6IMI4 303 aa22.94■■□□□ 1.26
USP48-204ENST00000400301 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.93■■□□□ 1.264e-9■■■□□ 14.6
USP48-204ENST00000400301 LRRIQ1Q96JM4 1722 aa22.93■■□□□ 1.26
USP48-204ENST00000400301 SAMD9LQ8IVG5 1584 aa22.92■■□□□ 1.26
USP48-204ENST00000400301 POLR3AO14802 1390 aaPredicted RBP22.92■■□□□ 1.26
USP48-204ENST00000400301 NFE2L2Q16236 605 aa22.92■■□□□ 1.26
USP48-204ENST00000400301 RILPL2Q969X0 211 aa22.92■■□□□ 1.26
USP48-204ENST00000400301 FKBP5Q13451 457 aaPredicted RBP22.92■■□□□ 1.26
USP48-204ENST00000400301 PLCB2Q00722 1185 aa22.91■■□□□ 1.26
USP48-204ENST00000400301 NSD2O96028 1365 aa22.9■■□□□ 1.26
USP48-204ENST00000400301 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.9■■□□□ 1.26
USP48-204ENST00000400301 CCDC61Q9Y6R9 512 aa22.9■■□□□ 1.26
USP48-204ENST00000400301 ZNF518AQ6AHZ1 1483 aa22.9■■□□□ 1.26
USP48-204ENST00000400301 GCC1Q96CN9 775 aa22.9■■□□□ 1.26
USP48-204ENST00000400301 ZNF692Q9BU19 519 aaPredicted RBP22.9■■□□□ 1.26
USP48-204ENST00000400301 NUDT16Q96DE0 195 aaKnown RBP22.89■■□□□ 1.26
USP48-204ENST00000400301 TRIM27P14373 513 aa22.89■■□□□ 1.25
USP48-204ENST00000400301 FGD1P98174 961 aa22.89■■□□□ 1.25
USP48-204ENST00000400301 GLIPR1L2Q4G1C9 344 aa22.89■■□□□ 1.25
USP48-204ENST00000400301 NUTM2GQ5VZR2 741 aa22.89■■□□□ 1.25
USP48-204ENST00000400301 FOXD4L5Q5VV16 416 aaPredicted RBP22.88■■□□□ 1.25
USP48-204ENST00000400301 FOXD4L4Q8WXT5 416 aaPredicted RBP22.88■■□□□ 1.25
USP48-204ENST00000400301 ABCC11Q96J66 1382 aa22.88■■□□□ 1.25
USP48-204ENST00000400301 CDC45O75419 566 aa22.88■■□□□ 1.25
USP48-204ENST00000400301 REC8O95072 547 aa22.88■■□□□ 1.25
USP48-204ENST00000400301 EIF2S2P20042 333 aaKnown RBP22.88■■□□□ 1.25
USP48-204ENST00000400301 NLRP6P59044 892 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms