RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 USP21Q9UK80 565 aa24.48■■□□□ 1.51
CUX2-202ENST00000397643 CDC42BPGQ6DT37 1551 aa24.47■■□□□ 1.51
CUX2-202ENST00000397643 ATAD2Q6PL18 1390 aa24.47■■□□□ 1.51
CUX2-202ENST00000397643 TRPC5Q9UL62 973 aaPredicted RBP24.46■■□□□ 1.51
CUX2-202ENST00000397643 PXDNQ92626 1479 aa24.45■■□□□ 1.51
CUX2-202ENST00000397643 RPGRIP1LQ68CZ1 1315 aa24.45■■□□□ 1.5
CUX2-202ENST00000397643 EP400Q96L91 3159 aa24.44■■□□□ 1.5
CUX2-202ENST00000397643 BCL9LQ86UU0 1499 aa24.41■■□□□ 1.5
CUX2-202ENST00000397643 MARF1Q9Y4F3 1742 aaKnown RBP24.4■■□□□ 1.5
CUX2-202ENST00000397643 NPHP3Q7Z494 1330 aa24.39■■□□□ 1.5
CUX2-202ENST00000397643 TECPR2O15040 1411 aa24.37■■□□□ 1.49
CUX2-202ENST00000397643 ESCO1Q5FWF5 840 aa24.36■■□□□ 1.49
CUX2-202ENST00000397643 SLC4A1APQ9BWU0 796 aaKnown RBP24.35■■□□□ 1.49
CUX2-202ENST00000397643 XPCQ01831 940 aaPredicted RBP24.34■■□□□ 1.49
CUX2-202ENST00000397643 ADGRF5Q8IZF2 1346 aa24.34■■□□□ 1.49
CUX2-202ENST00000397643 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.33■■□□□ 1.49
CUX2-202ENST00000397643 FOXO3O43524 673 aa24.33■■□□□ 1.49
CUX2-202ENST00000397643 KNDC1Q76NI1 1749 aa24.32■■□□□ 1.48
CUX2-202ENST00000397643 IFT172Q9UG01 1749 aa24.32■■□□□ 1.48
CUX2-202ENST00000397643 SPATA31E1Q6ZUB1 1445 aa24.31■■□□□ 1.48
CUX2-202ENST00000397643 LRPPRCP42704 1394 aaKnown RBP24.3■■□□□ 1.48
CUX2-202ENST00000397643 FOXD1Q16676 465 aa24.3■■□□□ 1.48
CUX2-202ENST00000397643 WAPLQ7Z5K2 1190 aa24.3■■□□□ 1.48
CUX2-202ENST00000397643 PLEKHH1Q9ULM0 1364 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 GLI3P10071 1580 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 GJD4Q96KN9 370 aaPredicted RBP24.29■■□□□ 1.48
CUX2-202ENST00000397643 FMN2Q9NZ56 1722 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 SLIT2O94813 1529 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 ABCC11Q96J66 1382 aa24.28■■□□□ 1.48
CUX2-202ENST00000397643 NUTM2FA1L443 756 aa24.27■■□□□ 1.48
CUX2-202ENST00000397643 STK26Q9P289 416 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 ZRANB1Q9UGI0 708 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 KIF1AQ12756 1690 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 CCDC144AA2RUR9 1427 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 PIK3C2GO75747 1445 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 RALGAPBQ86X10 1494 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 CCDC125Q86Z20 511 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 SPATA31A3Q5VYP0 1347 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 ANKRD30BQ9BXX2 1392 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 USP32Q8NFA0 1604 aa24.24■■□□□ 1.47
CUX2-202ENST00000397643 TMEM132EQ6IEE7 984 aa24.23■■□□□ 1.47
CUX2-202ENST00000397643 UNC5CLQ8IV45 518 aa24.22■■□□□ 1.47
CUX2-202ENST00000397643 YTHDC2Q9H6S0 1430 aaKnown RBP24.21■■□□□ 1.47
CUX2-202ENST00000397643 RGL3Q3MIN7 710 aa24.21■■□□□ 1.47
CUX2-202ENST00000397643 BRWD3Q6RI45 1802 aa24.19■■□□□ 1.46
CUX2-202ENST00000397643 BLMP54132 1417 aaPredicted RBP24.18■■□□□ 1.46
CUX2-202ENST00000397643 TNS3Q68CZ2 1445 aa24.17■■□□□ 1.46
CUX2-202ENST00000397643 RGPD8O14715 1765 aaPredicted RBP24.16■■□□□ 1.46
CUX2-202ENST00000397643 ABCA3Q99758 1704 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 KRT28Q7Z3Y7 464 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 PLCH1Q4KWH8 1693 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 NWD2Q9ULI1 1742 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 SIRT1Q96EB6 747 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 MPHOSPH9Q99550 1183 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 VPS72Q15906 364 aa24.11■■□□□ 1.45
CUX2-202ENST00000397643 PHF8Q9UPP1 1060 aa24.11■■□□□ 1.45
CUX2-202ENST00000397643 DEFB132Q7Z7B7 95 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 SEPT12Q8IYM1 358 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 CABLES1Q8TDN4 633 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 C14orf93Q9H972 538 aaKnown RBP24.1■■□□□ 1.45
CUX2-202ENST00000397643 SBNO1A3KN83 1393 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 ONECUT3O60422 494 aaPredicted RBP24.08■■□□□ 1.45
CUX2-202ENST00000397643 PSME1Q06323 249 aa24.05■■□□□ 1.44
CUX2-202ENST00000397643 CFAP70Q5T0N1 1121 aa24.05■■□□□ 1.44
CUX2-202ENST00000397643 ARHGEF10O15013 1369 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 NRAPQ86VF7 1730 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 DLC1Q96QB1 1528 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 DHX57Q6P158 1386 aaKnown RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 ADGRB2O60241 1585 aa24.03■■□□□ 1.44
CUX2-202ENST00000397643 LRP5O75197 1615 aa24.03■■□□□ 1.44
CUX2-202ENST00000397643 HAP1P54257 671 aaPredicted RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 TRPM3Q9HCF6 1732 aaPredicted RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 ANKARQ7Z5J8 1434 aa24.02■■□□□ 1.44
CUX2-202ENST00000397643 PRAM1Q96QH2 718 aa24.02■■□□□ 1.44
CUX2-202ENST00000397643 FAM83GA6ND36 823 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 PLEKHG5O94827 1062 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 KRT27Q7Z3Y8 459 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 SAFB2Q14151 953 aaKnown RBP eCLIP24■■□□□ 1.43
CUX2-202ENST00000397643 ADGRB1O14514 1584 aa23.99■■□□□ 1.43
CUX2-202ENST00000397643 ALS2Q96Q42 1657 aa23.99■■□□□ 1.43
CUX2-202ENST00000397643 SF3B2Q13435 895 aaKnown RBP23.98■■□□□ 1.43
CUX2-202ENST00000397643 CCDC9Q9Y3X0 531 aaKnown RBP23.98■■□□□ 1.43
CUX2-202ENST00000397643 LMOD2Q6P5Q4 547 aa23.97■■□□□ 1.43
CUX2-202ENST00000397643 PMFBP1Q8TBY8 1022 aa23.97■■□□□ 1.43
CUX2-202ENST00000397643 COL14A1Q05707 1796 aaKnown RBP23.95■■□□□ 1.42
CUX2-202ENST00000397643 CRYBG1Q9Y4K1 1723 aa23.95■■□□□ 1.42
CUX2-202ENST00000397643 PRR36Q9H6K5 1346 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 FAM98CQ17RN3 349 aaKnown RBP23.92■■□□□ 1.42
CUX2-202ENST00000397643 BTG4Q9NY30 223 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 POGKQ9P215 609 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 TULP4Q9NRJ4 1543 aa23.91■■□□□ 1.42
CUX2-202ENST00000397643 THSD7AQ9UPZ6 1657 aa23.9■■□□□ 1.42
CUX2-202ENST00000397643 ACIN1Q9UKV3 1341 aaKnown RBP23.89■■□□□ 1.42
CUX2-202ENST00000397643 BAG6P46379 1132 aa23.89■■□□□ 1.41
CUX2-202ENST00000397643 HIRIP3Q9BW71 556 aaPredicted RBP23.89■■□□□ 1.41
CUX2-202ENST00000397643 RGPD1P0DJD0 1748 aa23.89■■□□□ 1.41
CUX2-202ENST00000397643 A0A0G2JS52 829 aa23.88■■□□□ 1.41
CUX2-202ENST00000397643 PSDA5PKW4 1024 aaPredicted RBP23.88■■□□□ 1.41
CUX2-202ENST00000397643 MYT1Q01538 1121 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms