RNA–Protein interactions for RNA: ENST00000396464.7

GABPB1-204, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,401 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-204ENST00000396464 THAP11Q96EK4 314 aa8.66□□□□□ -1.02
GABPB1-204ENST00000396464 MYT1Q01538 1121 aa8.65□□□□□ -1.02
GABPB1-204ENST00000396464 BRICD5Q6PL45 260 aa8.64□□□□□ -1.03
GABPB1-204ENST00000396464 FAM160A2Q8N612 972 aaPredicted RBP8.64□□□□□ -1.03
GABPB1-204ENST00000396464 KRI1Q8N9T8 703 aaKnown RBP8.64□□□□□ -1.03
GABPB1-204ENST00000396464 IRF6O14896 467 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 MDM2Q00987 491 aaPredicted RBP8.63□□□□□ -1.03
GABPB1-204ENST00000396464 TRIM26Q12899 539 aaPredicted RBP8.63□□□□□ -1.03
GABPB1-204ENST00000396464 MINK1Q8N4C8 1332 aaPredicted RBP8.63□□□□□ -1.03
GABPB1-204ENST00000396464 KDM4AO75164 1064 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 UBTFP17480 764 aaKnown RBP8.63□□□□□ -1.03
GABPB1-204ENST00000396464 MSS51Q4VC12 460 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 RNF19BQ6ZMZ0 732 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 CYP4X1Q8N118 509 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 PRDM9Q9NQV7 894 aa8.63□□□□□ -1.03
GABPB1-204ENST00000396464 CD46P15529 392 aa8.62□□□□□ -1.03
GABPB1-204ENST00000396464 USP46P62068 366 aa8.61□□□□□ -1.03
GABPB1-204ENST00000396464 PKD2L1Q9P0L9 805 aa8.61□□□□□ -1.03
GABPB1-204ENST00000396464 TTC24A2A3L6 582 aaPredicted RBP8.59□□□□□ -1.03
GABPB1-204ENST00000396464 USB1Q9BQ65 265 aaKnown RBP8.59□□□□□ -1.03
GABPB1-204ENST00000396464 CLCN1P35523 988 aa8.58□□□□□ -1.04
GABPB1-204ENST00000396464 CCDC102AQ96A19 550 aa8.58□□□□□ -1.04
GABPB1-204ENST00000396464 ST8SIA5O15466 376 aa8.57□□□□□ -1.04
GABPB1-204ENST00000396464 ZNF775Q96BV0 537 aaPredicted RBP8.57□□□□□ -1.04
GABPB1-204ENST00000396464 GPCPD1Q9NPB8 672 aa8.57□□□□□ -1.04
GABPB1-204ENST00000396464 NUTM1Q86Y26 1132 aa8.56□□□□□ -1.04
GABPB1-204ENST00000396464 CCDC24Q8N4L8 307 aa8.56□□□□□ -1.04
GABPB1-204ENST00000396464 AAASQ9NRG9 546 aa8.55□□□□□ -1.04
GABPB1-204ENST00000396464 AXIN1O15169 862 aa8.54□□□□□ -1.04
GABPB1-204ENST00000396464 MMP16P51512 607 aa8.54□□□□□ -1.04
GABPB1-204ENST00000396464 TRIM32Q13049 653 aa8.54□□□□□ -1.04
GABPB1-204ENST00000396464 TOR4AQ9NXH8 423 aa8.54□□□□□ -1.04
GABPB1-204ENST00000396464 HOXA2O43364 376 aa8.54□□□□□ -1.04
GABPB1-204ENST00000396464 POTECB2RU33 542 aa8.53□□□□□ -1.04
GABPB1-204ENST00000396464 HRCP23327 699 aa8.53□□□□□ -1.04
GABPB1-204ENST00000396464 WNT7AO00755 349 aa8.52□□□□□ -1.05
GABPB1-204ENST00000396464 DXOO77932 396 aaKnown RBP8.52□□□□□ -1.05
GABPB1-204ENST00000396464 CTC1Q2NKJ3 1217 aa8.52□□□□□ -1.05
GABPB1-204ENST00000396464 HLA-CQ95604 372 aa8.52□□□□□ -1.05
GABPB1-204ENST00000396464 SNIP1Q8TAD8 396 aaKnown RBP8.51□□□□□ -1.05
GABPB1-204ENST00000396464 REPIN1Q9BWE0 567 aaKnown RBP8.51□□□□□ -1.05
GABPB1-204ENST00000396464 FAM217BQ9NTX9 383 aaPredicted RBP8.51□□□□□ -1.05
GABPB1-204ENST00000396464 AVPP01185 164 aa8.5□□□□□ -1.05
GABPB1-204ENST00000396464 CRIPAKQ8N1N5 446 aa8.5□□□□□ -1.05
GABPB1-204ENST00000396464 BRPF1P55201 1214 aaPredicted RBP8.49□□□□□ -1.05
GABPB1-204ENST00000396464 GUCA2AQ02747 115 aa8.49□□□□□ -1.05
GABPB1-204ENST00000396464 TTLL12Q14166 644 aaPredicted RBP8.49□□□□□ -1.05
GABPB1-204ENST00000396464 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.49□□□□□ -1.05
GABPB1-204ENST00000396464 C11orf95C9JLR9 678 aaPredicted RBP8.48□□□□□ -1.05
GABPB1-204ENST00000396464 MRGPRX2Q96LB1 330 aa8.48□□□□□ -1.05
GABPB1-204ENST00000396464 C6orf229H3BNL8 230 aa8.47□□□□□ -1.05
GABPB1-204ENST00000396464 JUNDP17535 347 aa8.47□□□□□ -1.05
GABPB1-204ENST00000396464 FDX1P10109 184 aa8.46□□□□□ -1.05
GABPB1-204ENST00000396464 RETREG3Q86VR2 466 aa8.46□□□□□ -1.05
GABPB1-204ENST00000396464 SYMPKQ92797 1274 aaKnown RBP8.46□□□□□ -1.05
GABPB1-204ENST00000396464 SSTR3P32745 418 aaPredicted RBP8.46□□□□□ -1.06
GABPB1-204ENST00000396464 WNT7BP56706 349 aa8.46□□□□□ -1.06
GABPB1-204ENST00000396464 RC3H1Q5TC82 1133 aaKnown RBP8.46□□□□□ -1.06
GABPB1-204ENST00000396464 NUDT12Q9BQG2 462 aa8.46□□□□□ -1.06
GABPB1-204ENST00000396464 DACH1Q9UI36 760 aa8.46□□□□□ -1.06
GABPB1-204ENST00000396464 SMPD1P17405 629 aa8.45□□□□□ -1.06
GABPB1-204ENST00000396464 SMCPP49901 116 aaPredicted RBP8.45□□□□□ -1.06
GABPB1-204ENST00000396464 GMPR2Q9P2T1 348 aaKnown RBP8.45□□□□□ -1.06
GABPB1-204ENST00000396464 J3QL48 77 aa8.44□□□□□ -1.06
GABPB1-204ENST00000396464 MS4A1P11836 297 aa8.43□□□□□ -1.06
GABPB1-204ENST00000396464 ALDH1A1P00352 501 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 TREML4Q6UXN2 200 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 BARGINQ6ZT62 677 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 EHBP1Q8NDI1 1231 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 SPIRE2Q8WWL2 714 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 SENP2Q9HC62 589 aa8.41□□□□□ -1.06
GABPB1-204ENST00000396464 CCNYL3P0C7X3 344 aa8.4□□□□□ -1.06
GABPB1-204ENST00000396464 ATP13A2Q9NQ11 1180 aa8.4□□□□□ -1.06
GABPB1-204ENST00000396464 SKOR1P84550 965 aa8.39□□□□□ -1.07
GABPB1-204ENST00000396464 HPS1Q92902 700 aa8.39□□□□□ -1.07
GABPB1-204ENST00000396464 PCDHGC3Q9UN70 934 aa8.39□□□□□ -1.07
GABPB1-204ENST00000396464 WASF2Q9Y6W5 498 aa8.39□□□□□ -1.07
GABPB1-204ENST00000396464 ZMYND10O75800 440 aa8.38□□□□□ -1.07
GABPB1-204ENST00000396464 NDUFV2P19404 249 aa8.38□□□□□ -1.07
GABPB1-204ENST00000396464 GIGYF2Q6Y7W6 1299 aaKnown RBP8.38□□□□□ -1.07
GABPB1-204ENST00000396464 MOXD2PA6NHM9 499 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 SPDYE5A6NIY4 337 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 DIXDC1Q155Q3 683 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 AMHR2Q16671 573 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 ZC3H15Q8WU90 426 aaKnown RBP8.37□□□□□ -1.07
GABPB1-204ENST00000396464 BEGAINQ9BUH8 593 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 WFS1O76024 890 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 MTMR2Q13614 643 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 PTPRNQ16849 979 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 PTCRAQ6ISU1 281 aaPredicted RBP8.37□□□□□ -1.07
GABPB1-204ENST00000396464 PRR7Q8TB68 274 aa8.37□□□□□ -1.07
GABPB1-204ENST00000396464 KIFC2Q96AC6 838 aa8.36□□□□□ -1.07
GABPB1-204ENST00000396464 NEUROD2Q15784 382 aa8.35□□□□□ -1.07
GABPB1-204ENST00000396464 LINC01559Q495D7 138 aa8.34□□□□□ -1.07
GABPB1-204ENST00000396464 TRIM47Q96LD4 638 aa8.34□□□□□ -1.07
GABPB1-204ENST00000396464 UNC93B1Q9H1C4 597 aa8.34□□□□□ -1.07
GABPB1-204ENST00000396464 EVA1BQ9NVM1 165 aa8.34□□□□□ -1.07
GABPB1-204ENST00000396464 SNRPBP14678 240 aaKnown RBP8.33□□□□□ -1.08
GABPB1-204ENST00000396464 CTHP32929 405 aa8.33□□□□□ -1.08
GABPB1-204ENST00000396464 KCNH2Q12809 1159 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms