RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FRAT2O75474 233 aaPredicted RBP16.38■□□□□ 0.21
SHMT1-205ENST00000395684 NINLQ9Y2I6 1382 aa16.38■□□□□ 0.21
SHMT1-205ENST00000395684 RARSP54136 660 aaKnown RBP16.37■□□□□ 0.21
SHMT1-205ENST00000395684 TCP11L2Q8N4U5 519 aa16.37■□□□□ 0.21
SHMT1-205ENST00000395684 RUNDC1Q96C34 613 aa16.37■□□□□ 0.21
SHMT1-205ENST00000395684 CHGAP10645 457 aaKnown RBP16.37■□□□□ 0.21
SHMT1-205ENST00000395684 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
SHMT1-205ENST00000395684 SHPRHQ149N8 1683 aa16.36■□□□□ 0.21
SHMT1-205ENST00000395684 PPRC1Q5VV67 1664 aaKnown RBP16.36■□□□□ 0.21
SHMT1-205ENST00000395684 TNNQ9UQP3 1299 aa16.35■□□□□ 0.21
SHMT1-205ENST00000395684 MAPK8IP3Q9UPT6 1336 aa16.35■□□□□ 0.21
SHMT1-205ENST00000395684 RLBP1P12271 317 aa16.35■□□□□ 0.21
SHMT1-205ENST00000395684 TMEM132EQ6IEE7 984 aa16.35■□□□□ 0.21
SHMT1-205ENST00000395684 C14orf93Q9H972 538 aaKnown RBP16.34■□□□□ 0.21
SHMT1-205ENST00000395684 BRPF3Q9ULD4 1205 aa16.34■□□□□ 0.21
SHMT1-205ENST00000395684 MTHFSP49914 203 aa16.34■□□□□ 0.21
SHMT1-205ENST00000395684 PCDHB15Q9Y5E8 787 aa16.34■□□□□ 0.21
SHMT1-205ENST00000395684 IQSEC2Q5JU85 1478 aa16.33■□□□□ 0.21
SHMT1-205ENST00000395684 ADGRB3O60242 1522 aa16.33■□□□□ 0.2
SHMT1-205ENST00000395684 SETBP1Q9Y6X0 1596 aa16.33■□□□□ 0.2
SHMT1-205ENST00000395684 WDR63Q8IWG1 891 aa16.32■□□□□ 0.2
SHMT1-205ENST00000395684 BCL2L13Q9BXK5 485 aa16.32■□□□□ 0.2
SHMT1-205ENST00000395684 LMTK2Q8IWU2 1503 aa16.31■□□□□ 0.2
SHMT1-205ENST00000395684 KIDINS220Q9ULH0 1771 aa16.31■□□□□ 0.2
SHMT1-205ENST00000395684 ADGRB1O14514 1584 aa16.31■□□□□ 0.2
SHMT1-205ENST00000395684 PMFBP1Q8TBY8 1022 aa16.3■□□□□ 0.2
SHMT1-205ENST00000395684 VIRMAQ69YN4 1812 aaKnown RBP16.3■□□□□ 0.2
SHMT1-205ENST00000395684 ZNF518AQ6AHZ1 1483 aa16.3■□□□□ 0.2
SHMT1-205ENST00000395684 CCDC27Q2M243 656 aa16.3■□□□□ 0.2
SHMT1-205ENST00000395684 NPATQ14207 1427 aa16.29■□□□□ 0.2
SHMT1-205ENST00000395684 NLRP1Q9C000 1473 aa16.29■□□□□ 0.2
SHMT1-205ENST00000395684 AAMPQ13685 434 aa16.28■□□□□ 0.2
SHMT1-205ENST00000395684 QRICH2Q9H0J4 1663 aa16.28■□□□□ 0.2
SHMT1-205ENST00000395684 ANO8Q9HCE9 1232 aaPredicted RBP16.27■□□□□ 0.2
SHMT1-205ENST00000395684 PDZRN3Q9UPQ7 1066 aa16.27■□□□□ 0.2
SHMT1-205ENST00000395684 ZC3H13Q5T200 1668 aaKnown RBP16.27■□□□□ 0.2
SHMT1-205ENST00000395684 ASXL2Q76L83 1435 aa16.27■□□□□ 0.2
SHMT1-205ENST00000395684 GGT6Q6P531 493 aa16.27■□□□□ 0.19
SHMT1-205ENST00000395684 CFAP53Q96M91 514 aa16.27■□□□□ 0.19
SHMT1-205ENST00000395684 PPLO60437 1756 aa16.25■□□□□ 0.19
SHMT1-205ENST00000395684 CFAP65Q6ZU64 1925 aaKnown RBP16.25■□□□□ 0.19
SHMT1-205ENST00000395684 U2AF1L5P0DN76 240 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-205ENST00000395684 U2AF1Q01081 240 aaKnown RBP eCLIP16.25■□□□□ 0.19
SHMT1-205ENST00000395684 NUTM2DQ5VT03 806 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-205ENST00000395684 MYH16Q9H6N6 1097 aa16.24■□□□□ 0.19
SHMT1-205ENST00000395684 USP32Q8NFA0 1604 aa16.24■□□□□ 0.19
SHMT1-205ENST00000395684 PRKCSHP14314 528 aaPredicted RBP16.24■□□□□ 0.19
SHMT1-205ENST00000395684 BECN1Q14457 450 aa16.24■□□□□ 0.19
SHMT1-205ENST00000395684 RPGRIP1LQ68CZ1 1315 aa16.24■□□□□ 0.19
SHMT1-205ENST00000395684 SLKQ9H2G2 1235 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-205ENST00000395684 RWDD1Q9H446 243 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-205ENST00000395684 ANKRD36BQ8N2N9 1353 aa16.22■□□□□ 0.19
SHMT1-205ENST00000395684 MVPQ14764 893 aaKnown RBP16.22■□□□□ 0.19
SHMT1-205ENST00000395684 TBC1D32Q96NH3 1257 aa16.22■□□□□ 0.19
SHMT1-205ENST00000395684 EVC2Q86UK5 1308 aa16.22■□□□□ 0.19
SHMT1-205ENST00000395684 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
SHMT1-205ENST00000395684 CABP2Q9NPB3 220 aa16.22■□□□□ 0.19
SHMT1-205ENST00000395684 PUS7Q96PZ0 661 aaKnown RBP16.22■□□□□ 0.19
SHMT1-205ENST00000395684 ANTXR1Q9H6X2 564 aa16.22■□□□□ 0.19
SHMT1-205ENST00000395684 ZMYM3Q14202 1370 aa16.21■□□□□ 0.19
SHMT1-205ENST00000395684 TSR2Q969E8 191 aaKnown RBP16.21■□□□□ 0.19
SHMT1-205ENST00000395684 FRMPD1Q5SYB0 1578 aa16.21■□□□□ 0.19
SHMT1-205ENST00000395684 TULP4Q9NRJ4 1543 aa16.21■□□□□ 0.19
SHMT1-205ENST00000395684 ZKSCAN2Q63HK3 967 aa16.2■□□□□ 0.18
SHMT1-205ENST00000395684 DZIP1LQ8IYY4 767 aaKnown RBP16.2■□□□□ 0.18
SHMT1-205ENST00000395684 UPF2Q9HAU5 1272 aaKnown RBP16.2■□□□□ 0.18
SHMT1-205ENST00000395684 POGKQ9P215 609 aa16.2■□□□□ 0.18
SHMT1-205ENST00000395684 NSD2O96028 1365 aa16.19■□□□□ 0.18
SHMT1-205ENST00000395684 TBC1D2Q9BYX2 928 aa16.19■□□□□ 0.18
SHMT1-205ENST00000395684 SAFB2Q14151 953 aaKnown RBP eCLIP16.19■□□□□ 0.18
SHMT1-205ENST00000395684 PLEKHF1Q96S99 279 aa16.19■□□□□ 0.18
SHMT1-205ENST00000395684 GLI2P10070 1586 aa16.19■□□□□ 0.18
SHMT1-205ENST00000395684 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
SHMT1-205ENST00000395684 FTSJ3Q8IY81 847 aaKnown RBP16.18■□□□□ 0.18
SHMT1-205ENST00000395684 EXOSC9Q06265 439 aaKnown RBP16.18■□□□□ 0.18
SHMT1-205ENST00000395684 ADGRB2O60241 1585 aa16.17■□□□□ 0.18
SHMT1-205ENST00000395684 VGFO15240 615 aaPredicted RBP16.17■□□□□ 0.18
SHMT1-205ENST00000395684 TRIM35Q9UPQ4 493 aa16.17■□□□□ 0.18
SHMT1-205ENST00000395684 CD109Q6YHK3 1445 aa16.17■□□□□ 0.18
SHMT1-205ENST00000395684 POGZQ7Z3K3 1410 aa16.17■□□□□ 0.18
SHMT1-205ENST00000395684 ABCC3O15438 1527 aa16.16■□□□□ 0.18
SHMT1-205ENST00000395684 MLH3Q9UHC1 1453 aa16.16■□□□□ 0.18
SHMT1-205ENST00000395684 TRIM27P14373 513 aa16.16■□□□□ 0.18
SHMT1-205ENST00000395684 U2SURPO15042 1029 aaKnown RBP16.16■□□□□ 0.18
SHMT1-205ENST00000395684 TMPOP42166 694 aaKnown RBP16.16■□□□□ 0.18
SHMT1-205ENST00000395684 SSH1Q8WYL5 1049 aa16.16■□□□□ 0.18
SHMT1-205ENST00000395684 SMC4Q9NTJ3 1288 aa16.16■□□□□ 0.18
SHMT1-205ENST00000395684 A0A1W2PP64 1363 aa16.15■□□□□ 0.18
SHMT1-205ENST00000395684 CT47B1P0C2W7 299 aaPredicted RBP16.15■□□□□ 0.18
SHMT1-205ENST00000395684 GGNBP2Q9H3C7 697 aa16.15■□□□□ 0.18
SHMT1-205ENST00000395684 ARHGEF28Q8N1W1 1705 aaKnown RBP16.15■□□□□ 0.18
SHMT1-205ENST00000395684 HECW2Q9P2P5 1572 aa16.15■□□□□ 0.18
SHMT1-205ENST00000395684 SENP3Q9H4L4 574 aaPredicted RBP16.14■□□□□ 0.17
SHMT1-205ENST00000395684 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
SHMT1-205ENST00000395684 NEXMIFQ5QGS0 1516 aa16.14■□□□□ 0.17
SHMT1-205ENST00000395684 STK26Q9P289 416 aa16.13■□□□□ 0.17
SHMT1-205ENST00000395684 SIGLEC1Q9BZZ2 1709 aa16.13■□□□□ 0.17
SHMT1-205ENST00000395684 HDAC1Q13547 482 aaPredicted RBP16.12■□□□□ 0.17
SHMT1-205ENST00000395684 SRPK2P78362 688 aaKnown RBP16.12■□□□□ 0.17
SHMT1-205ENST00000395684 ATF7IPQ6VMQ6 1270 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms