RNA–Protein interactions for RNA: ENST00000374429.6

CXCL12-203, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CXCL12, Length 3,532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-203ENST00000374429 COL17A1Q9UMD9 1497 aaPredicted RBP13.96□□□□□ -0.18
CXCL12-203ENST00000374429 RIPK4P57078 832 aa13.95□□□□□ -0.18
CXCL12-203ENST00000374429 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
CXCL12-203ENST00000374429 NME9Q86XW9 330 aa13.95□□□□□ -0.18
CXCL12-203ENST00000374429 SMC4Q9NTJ3 1288 aa13.95□□□□□ -0.18
CXCL12-203ENST00000374429 TERF2IPQ9NYB0 399 aa13.95□□□□□ -0.18
CXCL12-203ENST00000374429 EMILIN1Q9Y6C2 1016 aa13.95□□□□□ -0.18
CXCL12-203ENST00000374429 MAST1Q9Y2H9 1570 aa13.94□□□□□ -0.18
CXCL12-203ENST00000374429 SLFN5Q08AF3 891 aa13.94□□□□□ -0.18
CXCL12-203ENST00000374429 ITPRIPQ8IWB1 547 aa13.94□□□□□ -0.18
CXCL12-203ENST00000374429 NECTIN2Q92692 538 aa13.93□□□□□ -0.18
CXCL12-203ENST00000374429 LRPPRCP42704 1394 aaKnown RBP13.93□□□□□ -0.18
CXCL12-203ENST00000374429 PRDM15P57071 1507 aaPredicted RBP13.93□□□□□ -0.18
CXCL12-203ENST00000374429 ZNF518AQ6AHZ1 1483 aa13.93□□□□□ -0.18
CXCL12-203ENST00000374429 EXOSC9Q06265 439 aaKnown RBP13.92□□□□□ -0.18
CXCL12-203ENST00000374429 GPRASP1Q5JY77 1395 aa13.92□□□□□ -0.18
CXCL12-203ENST00000374429 RUNDC1Q96C34 613 aa13.91□□□□□ -0.18
CXCL12-203ENST00000374429 E9PSI1 815 aa13.91□□□□□ -0.18
CXCL12-203ENST00000374429 PRKAR2BP31323 418 aa13.91□□□□□ -0.18
CXCL12-203ENST00000374429 IL27Q8NEV9 243 aa13.91□□□□□ -0.18
CXCL12-203ENST00000374429 ZFYVE16Q7Z3T8 1539 aa13.9□□□□□ -0.18
CXCL12-203ENST00000374429 FYB1O15117 783 aa13.9□□□□□ -0.18
CXCL12-203ENST00000374429 C1orf115Q9H7X2 142 aa13.9□□□□□ -0.18
CXCL12-203ENST00000374429 SLC52A1Q9NWF4 448 aa13.9□□□□□ -0.18
CXCL12-203ENST00000374429 MIS18AQ9NYP9 233 aa13.9□□□□□ -0.18
CXCL12-203ENST00000374429 FAM83GA6ND36 823 aa13.89□□□□□ -0.19
CXCL12-203ENST00000374429 XPCQ01831 940 aaPredicted RBP13.89□□□□□ -0.19
CXCL12-203ENST00000374429 CLASP1Q7Z460 1538 aa13.89□□□□□ -0.19
CXCL12-203ENST00000374429 DIAPH1O60610 1272 aaKnown RBP13.89□□□□□ -0.19
CXCL12-203ENST00000374429 IGHDP01880 384 aa13.89□□□□□ -0.19
CXCL12-203ENST00000374429 RTEL1-TNFRSF6BF6WH68 1400 aa13.88□□□□□ -0.19
CXCL12-203ENST00000374429 RLBP1P12271 317 aa13.88□□□□□ -0.19
CXCL12-203ENST00000374429 TSPOAP1O95153 1857 aa13.88□□□□□ -0.19
CXCL12-203ENST00000374429 NGDNQ8NEJ9 315 aaKnown RBP13.87□□□□□ -0.19
CXCL12-203ENST00000374429 CLTCL1P53675 1640 aa13.87□□□□□ -0.19
CXCL12-203ENST00000374429 IPO9Q96P70 1041 aaKnown RBP13.86□□□□□ -0.19
CXCL12-203ENST00000374429 UHRF1BP1LA0JNW5 1464 aa13.86□□□□□ -0.19
CXCL12-203ENST00000374429 E9PCH4 1651 aa13.85□□□□□ -0.19
CXCL12-203ENST00000374429 SLKQ9H2G2 1235 aaPredicted RBP13.85□□□□□ -0.19
CXCL12-203ENST00000374429 POGZQ7Z3K3 1410 aa13.85□□□□□ -0.19
CXCL12-203ENST00000374429 PHACTR3Q96KR7 559 aa13.85□□□□□ -0.19
CXCL12-203ENST00000374429 TRPM1Q7Z4N2 1603 aa13.84□□□□□ -0.19
CXCL12-203ENST00000374429 SHROOM2Q13796 1616 aa13.84□□□□□ -0.19
CXCL12-203ENST00000374429 NUDT16Q96DE0 195 aaKnown RBP13.84□□□□□ -0.19
CXCL12-203ENST00000374429 ERVK-7P63135 1459 aa13.83□□□□□ -0.2
CXCL12-203ENST00000374429 A0A1W2PP64 1363 aa13.83□□□□□ -0.2
CXCL12-203ENST00000374429 KRT24Q2M2I5 525 aa13.83□□□□□ -0.2
CXCL12-203ENST00000374429 COG3Q96JB2 828 aa13.83□□□□□ -0.2
CXCL12-203ENST00000374429 STAC3Q96MF2 364 aa13.83□□□□□ -0.2
CXCL12-203ENST00000374429 TMPOP42166 694 aaKnown RBP13.82□□□□□ -0.2
CXCL12-203ENST00000374429 AEBP1Q8IUX7 1158 aa13.82□□□□□ -0.2
CXCL12-203ENST00000374429 ASXL1Q8IXJ9 1541 aa13.82□□□□□ -0.2
CXCL12-203ENST00000374429 MYH16Q9H6N6 1097 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 NOB1Q9ULX3 412 aaKnown RBP13.81□□□□□ -0.2
CXCL12-203ENST00000374429 PTPRTO14522 1441 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 FANCIQ9NVI1 1328 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 IQGAP3Q86VI3 1631 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 RARSP54136 660 aaKnown RBP13.81□□□□□ -0.2
CXCL12-203ENST00000374429 SULT6B1Q6IMI4 303 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 SLC4A10Q6U841 1118 aa13.81□□□□□ -0.2
CXCL12-203ENST00000374429 MCM10Q7L590 875 aa13.8□□□□□ -0.2
CXCL12-203ENST00000374429 SSH1Q8WYL5 1049 aa13.8□□□□□ -0.2
CXCL12-203ENST00000374429 BACH2Q9BYV9 841 aa13.8□□□□□ -0.2
CXCL12-203ENST00000374429 PCDHB15Q9Y5E8 787 aa13.8□□□□□ -0.2
CXCL12-203ENST00000374429 USHBP1Q8N6Y0 703 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 RPGRIP1LQ68CZ1 1315 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 UNC13BO14795 1591 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 AMPHP49418 695 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 MFAP1P55081 439 aaKnown RBP13.78□□□□□ -0.2
CXCL12-203ENST00000374429 LNPKQ9C0E8 428 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 EID1Q9Y6B2 187 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 RNF123Q5XPI4 1314 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 LTKP29376 864 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 GLIPR1L2Q4G1C9 344 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 HSP90AB2PQ58FF8 381 aa13.78□□□□□ -0.2
CXCL12-203ENST00000374429 CENPQQ7L2Z9 268 aaPredicted RBP13.78□□□□□ -0.2
CXCL12-203ENST00000374429 TRPM2O94759 1503 aa13.77□□□□□ -0.2
CXCL12-203ENST00000374429 TSPYL6Q8N831 410 aa13.77□□□□□ -0.2
CXCL12-203ENST00000374429 FOXD4L1Q9NU39 408 aa13.77□□□□□ -0.2
CXCL12-203ENST00000374429 POLKQ9UBT6 870 aa13.77□□□□□ -0.21
CXCL12-203ENST00000374429 PLXNC1O60486 1568 aa13.77□□□□□ -0.21
CXCL12-203ENST00000374429 DZIP1LQ8IYY4 767 aaKnown RBP13.77□□□□□ -0.21
CXCL12-203ENST00000374429 SEC24BO95487 1268 aa13.76□□□□□ -0.21
CXCL12-203ENST00000374429 WASLO00401 505 aaPredicted RBP13.76□□□□□ -0.21
CXCL12-203ENST00000374429 NLRP6P59044 892 aa13.76□□□□□ -0.21
CXCL12-203ENST00000374429 ZKSCAN2Q63HK3 967 aa13.76□□□□□ -0.21
CXCL12-203ENST00000374429 FOXO3O43524 673 aa13.75□□□□□ -0.21
CXCL12-203ENST00000374429 CEP152O94986 1710 aa13.75□□□□□ -0.21
CXCL12-203ENST00000374429 TPRNQ4KMQ1 711 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 AMOTL2Q9Y2J4 779 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 CCDC61Q9Y6R9 512 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 TMEM57Q8N5G2 664 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 PDZRN3Q9UPQ7 1066 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 METP08581 1390 aa13.74□□□□□ -0.21
CXCL12-203ENST00000374429 ZMYM3Q14202 1370 aa13.73□□□□□ -0.21
CXCL12-203ENST00000374429 HDGFP51858 240 aaKnown RBP13.73□□□□□ -0.21
CXCL12-203ENST00000374429 TRIM27P14373 513 aa13.73□□□□□ -0.21
CXCL12-203ENST00000374429 KIDINS220Q9ULH0 1771 aa13.72□□□□□ -0.21
CXCL12-203ENST00000374429 ANKRD45Q5TZF3 282 aa13.72□□□□□ -0.21
CXCL12-203ENST00000374429 MADDQ8WXG6 1647 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms