RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 CCDC73Q6ZRK6 1079 aa22.23■■□□□ 1.15
SHANK1-202ENST00000359082 LNPKQ9C0E8 428 aa22.23■■□□□ 1.15
SHANK1-202ENST00000359082 RIC3Q7Z5B4 369 aa22.23■■□□□ 1.15
SHANK1-202ENST00000359082 PTPRGP23470 1445 aa22.23■■□□□ 1.15
SHANK1-202ENST00000359082 RRP12Q5JTH9 1297 aaKnown RBP22.23■■□□□ 1.15
SHANK1-202ENST00000359082 PDILTQ8N807 584 aa22.23■■□□□ 1.15
SHANK1-202ENST00000359082 ERC2O15083 957 aa22.22■■□□□ 1.15
SHANK1-202ENST00000359082 MNS1Q8NEH6 495 aa22.22■■□□□ 1.15
SHANK1-202ENST00000359082 ODF2Q5BJF6 829 aa22.22■■□□□ 1.15
SHANK1-202ENST00000359082 RUNDC1Q96C34 613 aa22.21■■□□□ 1.15
SHANK1-202ENST00000359082 EPS15P42566 896 aa22.21■■□□□ 1.15
SHANK1-202ENST00000359082 OLFM4Q6UX06 510 aa22.2■■□□□ 1.14
SHANK1-202ENST00000359082 RALYLQ86SE5 291 aaKnown RBP22.2■■□□□ 1.14
SHANK1-202ENST00000359082 DHX57Q6P158 1386 aaKnown RBP22.19■■□□□ 1.14
SHANK1-202ENST00000359082 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.19■■□□□ 1.14
SHANK1-202ENST00000359082 NUCB2P80303 420 aa22.18■■□□□ 1.14
SHANK1-202ENST00000359082 TTLL5Q6EMB2 1281 aa22.18■■□□□ 1.14
SHANK1-202ENST00000359082 C22orf23Q9BZE7 217 aa22.18■■□□□ 1.14
SHANK1-202ENST00000359082 HSP90AB2PQ58FF8 381 aa22.18■■□□□ 1.14
SHANK1-202ENST00000359082 ZFYVE27Q5T4F4 411 aa22.17■■□□□ 1.14
SHANK1-202ENST00000359082 BRMS1Q9HCU9 246 aa22.17■■□□□ 1.14
SHANK1-202ENST00000359082 NUTM2GQ5VZR2 741 aa22.17■■□□□ 1.14
SHANK1-202ENST00000359082 AEBP2Q6ZN18 517 aaPredicted RBP22.17■■□□□ 1.14
SHANK1-202ENST00000359082 HSP90AB4PQ58FF6 505 aa22.17■■□□□ 1.14
SHANK1-202ENST00000359082 CAGE1Q8TC20 777 aa22.16■■□□□ 1.14
SHANK1-202ENST00000359082 FANCIQ9NVI1 1328 aa22.16■■□□□ 1.14
SHANK1-202ENST00000359082 OSCARQ8IYS5 282 aa22.16■■□□□ 1.14
SHANK1-202ENST00000359082 ARGLU1Q9NWB6 273 aaPredicted RBP22.16■■□□□ 1.14
SHANK1-202ENST00000359082 PANK1Q8TE04 598 aa22.16■■□□□ 1.14
SHANK1-202ENST00000359082 CDR1P51861 262 aa22.15■■□□□ 1.14
SHANK1-202ENST00000359082 NINLQ9Y2I6 1382 aa22.15■■□□□ 1.14
SHANK1-202ENST00000359082 GNAI1P63096 354 aa22.15■■□□□ 1.14
SHANK1-202ENST00000359082 SKIDA1Q1XH10 827 aa22.14■■□□□ 1.13
SHANK1-202ENST00000359082 FAM43AQ8N2R8 423 aa22.14■■□□□ 1.13
SHANK1-202ENST00000359082 ACBD3Q9H3P7 528 aa22.14■■□□□ 1.13
SHANK1-202ENST00000359082 NAT10Q9H0A0 1025 aaKnown RBP22.13■■□□□ 1.13
SHANK1-202ENST00000359082 UBTFL1P0CB47 393 aaPredicted RBP22.12■■□□□ 1.13
SHANK1-202ENST00000359082 IKQ13123 557 aaPredicted RBP22.12■■□□□ 1.13
SHANK1-202ENST00000359082 RAPGEF4Q8WZA2 1011 aa22.12■■□□□ 1.13
SHANK1-202ENST00000359082 CDC45O75419 566 aa22.12■■□□□ 1.13
SHANK1-202ENST00000359082 OFD1O75665 1012 aa22.11■■□□□ 1.13
SHANK1-202ENST00000359082 CNTROBQ8N137 903 aa22.11■■□□□ 1.13
SHANK1-202ENST00000359082 DNAJC2Q99543 621 aaKnown RBP22.11■■□□□ 1.13
SHANK1-202ENST00000359082 FSD1Q9BTV5 496 aa22.11■■□□□ 1.13
SHANK1-202ENST00000359082 FAM177BA6PVY3 158 aa22.1■■□□□ 1.13
SHANK1-202ENST00000359082 R3HCC1Q9Y3T6 440 aaKnown RBP22.1■■□□□ 1.13
SHANK1-202ENST00000359082 CCDC39Q9UFE4 941 aa22.1■■□□□ 1.13
SHANK1-202ENST00000359082 XBP1P17861 261 aa22.1■■□□□ 1.13
SHANK1-202ENST00000359082 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.09■■□□□ 1.13
SHANK1-202ENST00000359082 RNF214Q8ND24 703 aa22.09■■□□□ 1.13
SHANK1-202ENST00000359082 CALRP27797 417 aaKnown RBP22.09■■□□□ 1.13
SHANK1-202ENST00000359082 HSP90B2PQ58FF3 399 aa22.09■■□□□ 1.13
SHANK1-202ENST00000359082 PSMA5P28066 241 aa22.09■■□□□ 1.13
SHANK1-202ENST00000359082 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
SHANK1-202ENST00000359082 GGNBP2Q9H3C7 697 aa22.08■■□□□ 1.13
SHANK1-202ENST00000359082 CABP2Q9NPB3 220 aa22.08■■□□□ 1.13
SHANK1-202ENST00000359082 NLRP2Q9NX02 1062 aa22.08■■□□□ 1.12
SHANK1-202ENST00000359082 SMC2O95347 1197 aa22.07■■□□□ 1.12
SHANK1-202ENST00000359082 TMEM132AQ24JP5 1023 aa22.07■■□□□ 1.12
SHANK1-202ENST00000359082 NOM1Q5C9Z4 860 aaKnown RBP22.07■■□□□ 1.12
SHANK1-202ENST00000359082 SDF4Q9BRK5 362 aa22.07■■□□□ 1.12
SHANK1-202ENST00000359082 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
SHANK1-202ENST00000359082 NASPP49321 788 aaPredicted RBP22.06■■□□□ 1.12
SHANK1-202ENST00000359082 CCDC173Q0VFZ6 552 aa22.06■■□□□ 1.12
SHANK1-202ENST00000359082 ATP2B1P20020 1258 aa22.05■■□□□ 1.12
SHANK1-202ENST00000359082 ATF3P18847 181 aa22.05■■□□□ 1.12
SHANK1-202ENST00000359082 MAP7D2Q96T17 732 aa22.04■■□□□ 1.12
SHANK1-202ENST00000359082 BRPF1P55201 1214 aaPredicted RBP22.03■■□□□ 1.12
SHANK1-202ENST00000359082 NFKBIBQ15653 356 aa22.03■■□□□ 1.12
SHANK1-202ENST00000359082 CDK5RAP3Q96JB5 506 aa22.02■■□□□ 1.12
SHANK1-202ENST00000359082 TRIM5Q9C035 493 aa22.02■■□□□ 1.12
SHANK1-202ENST00000359082 TBC1D2BQ9UPU7 963 aa22.02■■□□□ 1.12
SHANK1-202ENST00000359082 CAVIN1Q6NZI2 390 aaKnown RBP22.02■■□□□ 1.12
SHANK1-202ENST00000359082 CEBPZQ03701 1054 aaKnown RBP22.01■■□□□ 1.11
SHANK1-202ENST00000359082 MIA2Q96PC5 1412 aa22.01■■□□□ 1.11
SHANK1-202ENST00000359082 SART3Q15020 963 aaKnown RBP22.01■■□□□ 1.11
SHANK1-202ENST00000359082 MAGEC2Q9UBF1 373 aaPredicted RBP22.01■■□□□ 1.11
SHANK1-202ENST00000359082 FGD5Q6ZNL6 1462 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 C1orf115Q9H7X2 142 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 STK11IPQ8N1F8 1099 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 TSPY26PQ9H489 355 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 KIF6Q6ZMV9 814 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 FMNL2Q96PY5 1086 aa22■■□□□ 1.11
SHANK1-202ENST00000359082 PRDM2Q13029 1718 aa21.99■■□□□ 1.11
SHANK1-202ENST00000359082 LETM1O95202 739 aaPredicted RBP21.99■■□□□ 1.11
SHANK1-202ENST00000359082 TTC39AQ5SRH9 613 aa21.99■■□□□ 1.11
SHANK1-202ENST00000359082 SURF6O75683 361 aaKnown RBP21.99■■□□□ 1.11
SHANK1-202ENST00000359082 PHF23Q9BUL5 403 aaPredicted RBP21.98■■□□□ 1.11
SHANK1-202ENST00000359082 ZNF428Q96B54 188 aa21.98■■□□□ 1.11
SHANK1-202ENST00000359082 CCDC30Q5VVM6 783 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 MYO6Q9UM54 1294 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 ERCC4Q92889 916 aaPredicted RBP21.97■■□□□ 1.11
SHANK1-202ENST00000359082 SMARCE1Q969G3 411 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 PRPF40AO75400 957 aaKnown RBP21.97■■□□□ 1.11
SHANK1-202ENST00000359082 RBM42Q9BTD8 480 aaKnown RBP21.97■■□□□ 1.11
SHANK1-202ENST00000359082 KRT18P05783 430 aaKnown RBP21.97■■□□□ 1.11
SHANK1-202ENST00000359082 MRE11P49959 708 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 H0YHG0 523 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 DCTN1Q14203 1278 aa21.97■■□□□ 1.11
SHANK1-202ENST00000359082 KIF7Q2M1P5 1343 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms