RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 PLEKHH1Q9ULM0 1364 aa24.45■■□□□ 1.5
CLN3-203ENST00000357806 SIRT1Q96EB6 747 aa24.45■■□□□ 1.5
CLN3-203ENST00000357806 TONSLQ96HA7 1378 aa24.44■■□□□ 1.5
CLN3-203ENST00000357806 WAPLQ7Z5K2 1190 aa24.44■■□□□ 1.5
CLN3-203ENST00000357806 NHSL1Q5SYE7 1610 aa24.44■■□□□ 1.5
CLN3-203ENST00000357806 ADGRB2O60241 1585 aa24.43■■□□□ 1.5
CLN3-203ENST00000357806 AHDC1Q5TGY3 1603 aaPredicted RBP24.42■■□□□ 1.5
CLN3-203ENST00000357806 RGPD8O14715 1765 aaPredicted RBP24.41■■□□□ 1.5
CLN3-203ENST00000357806 COL16A1Q07092 1604 aaPredicted RBP24.4■■□□□ 1.5
CLN3-203ENST00000357806 TRAK1Q9UPV9 953 aa24.39■■□□□ 1.5
CLN3-203ENST00000357806 PRAM1Q96QH2 718 aa24.38■■□□□ 1.49
CLN3-203ENST00000357806 C1orf167Q5SNV9 1468 aa24.38■■□□□ 1.49
CLN3-203ENST00000357806 POGKQ9P215 609 aa24.37■■□□□ 1.49
CLN3-203ENST00000357806 CLSPNQ9HAW4 1339 aa24.36■■□□□ 1.49
CLN3-203ENST00000357806 QRICH2Q9H0J4 1663 aa24.35■■□□□ 1.49
CLN3-203ENST00000357806 BRINP3Q76B58 766 aa24.35■■□□□ 1.49
CLN3-203ENST00000357806 KIF1AQ12756 1690 aa24.34■■□□□ 1.49
CLN3-203ENST00000357806 SAFB2Q14151 953 aaKnown RBP eCLIP24.33■■□□□ 1.49
CLN3-203ENST00000357806 NBPF1Q3BBV0 1214 aa24.33■■□□□ 1.49
CLN3-203ENST00000357806 ITSN1Q15811 1721 aa24.31■■□□□ 1.48
CLN3-203ENST00000357806 SHPRHQ149N8 1683 aa24.31■■□□□ 1.48
CLN3-203ENST00000357806 ROCK2O75116 1388 aaKnown RBP24.3■■□□□ 1.48
CLN3-203ENST00000357806 USP32Q8NFA0 1604 aa24.3■■□□□ 1.48
CLN3-203ENST00000357806 RALGAPBQ86X10 1494 aa24.28■■□□□ 1.48
CLN3-203ENST00000357806 MED1Q15648 1581 aaPredicted RBP24.27■■□□□ 1.48
CLN3-203ENST00000357806 NBPF8Q3BBV2 869 aa24.26■■□□□ 1.47
CLN3-203ENST00000357806 MINK1Q8N4C8 1332 aaPredicted RBP24.25■■□□□ 1.47
CLN3-203ENST00000357806 TULP4Q9NRJ4 1543 aa24.25■■□□□ 1.47
CLN3-203ENST00000357806 EIF3AQ14152 1382 aaKnown RBP24.25■■□□□ 1.47
CLN3-203ENST00000357806 CCER1Q8TC90 406 aaPredicted RBP24.25■■□□□ 1.47
CLN3-203ENST00000357806 ORAI2Q96SN7 254 aa24.25■■□□□ 1.47
CLN3-203ENST00000357806 ANKARQ7Z5J8 1434 aa24.24■■□□□ 1.47
CLN3-203ENST00000357806 GPRASP1Q5JY77 1395 aa24.24■■□□□ 1.47
CLN3-203ENST00000357806 NUTM2FA1L443 756 aa24.24■■□□□ 1.47
CLN3-203ENST00000357806 HIRIP3Q9BW71 556 aaPredicted RBP24.23■■□□□ 1.47
CLN3-203ENST00000357806 JCADQ9P266 1359 aa24.22■■□□□ 1.47
CLN3-203ENST00000357806 ESCO1Q5FWF5 840 aa24.22■■□□□ 1.47
CLN3-203ENST00000357806 TOPAZ1Q8N9V7 1692 aa24.21■■□□□ 1.47
CLN3-203ENST00000357806 CENPJQ9HC77 1338 aaPredicted RBP24.21■■□□□ 1.47
CLN3-203ENST00000357806 TIMELESSQ9UNS1 1208 aa24.19■■□□□ 1.46
CLN3-203ENST00000357806 WASLO00401 505 aaPredicted RBP24.18■■□□□ 1.46
CLN3-203ENST00000357806 DDX17Q92841 729 aaKnown RBP24.18■■□□□ 1.46
CLN3-203ENST00000357806 NPHP3Q7Z494 1330 aa24.17■■□□□ 1.46
CLN3-203ENST00000357806 PXDNQ92626 1479 aa24.16■■□□□ 1.46
CLN3-203ENST00000357806 ATP7BP35670 1465 aa24.16■■□□□ 1.46
CLN3-203ENST00000357806 CARD11Q9BXL7 1154 aa24.15■■□□□ 1.46
CLN3-203ENST00000357806 SOS2Q07890 1332 aaPredicted RBP24.15■■□□□ 1.46
CLN3-203ENST00000357806 LRRC59Q96AG4 307 aaKnown RBP24.13■■□□□ 1.45
CLN3-203ENST00000357806 COL22A1Q8NFW1 1626 aaPredicted RBP24.13■■□□□ 1.45
CLN3-203ENST00000357806 PHF8Q9UPP1 1060 aa24.13■■□□□ 1.45
CLN3-203ENST00000357806 DISP3Q9P2K9 1392 aa24.12■■□□□ 1.45
CLN3-203ENST00000357806 FOXO3O43524 673 aa24.11■■□□□ 1.45
CLN3-203ENST00000357806 SPATA31A6Q5VVP1 1343 aa24.11■■□□□ 1.45
CLN3-203ENST00000357806 PRR36Q9H6K5 1346 aa24.11■■□□□ 1.45
CLN3-203ENST00000357806 TRPM3Q9HCF6 1732 aaPredicted RBP24.1■■□□□ 1.45
CLN3-203ENST00000357806 CDK19Q9BWU1 502 aa24.09■■□□□ 1.45
CLN3-203ENST00000357806 PNPLA6Q8IY17 1366 aa24.09■■□□□ 1.45
CLN3-203ENST00000357806 MARF1Q9Y4F3 1742 aaKnown RBP24.07■■□□□ 1.44
CLN3-203ENST00000357806 LRP6O75581 1613 aa24.06■■□□□ 1.44
CLN3-203ENST00000357806 SBNO2Q9Y2G9 1366 aa24.06■■□□□ 1.44
CLN3-203ENST00000357806 NUDT16Q96DE0 195 aaKnown RBP24.06■■□□□ 1.44
CLN3-203ENST00000357806 XPCQ01831 940 aaPredicted RBP24.05■■□□□ 1.44
CLN3-203ENST00000357806 PMFBP1Q8TBY8 1022 aa24.05■■□□□ 1.44
CLN3-203ENST00000357806 ALS2Q96Q42 1657 aa24.04■■□□□ 1.44
CLN3-203ENST00000357806 SRPK2P78362 688 aaKnown RBP24.04■■□□□ 1.44
CLN3-203ENST00000357806 EVC2Q86UK5 1308 aa24.04■■□□□ 1.44
CLN3-203ENST00000357806 ABCA3Q99758 1704 aa24.03■■□□□ 1.44
CLN3-203ENST00000357806 KRT28Q7Z3Y7 464 aa24.02■■□□□ 1.44
CLN3-203ENST00000357806 PHF23Q9BUL5 403 aaPredicted RBP24.02■■□□□ 1.44
CLN3-203ENST00000357806 TNS3Q68CZ2 1445 aa24.01■■□□□ 1.43
CLN3-203ENST00000357806 PSME1Q06323 249 aa24.01■■□□□ 1.43
CLN3-203ENST00000357806 CCDC61Q9Y6R9 512 aa24■■□□□ 1.43
CLN3-203ENST00000357806 AKAP12Q02952 1782 aa24■■□□□ 1.43
CLN3-203ENST00000357806 PPIP5K1Q6PFW1 1433 aa24■■□□□ 1.43
CLN3-203ENST00000357806 SBNO1A3KN83 1393 aa24■■□□□ 1.43
CLN3-203ENST00000357806 CABP2Q9NPB3 220 aa24■■□□□ 1.43
CLN3-203ENST00000357806 SPATA31A3Q5VYP0 1347 aa23.99■■□□□ 1.43
CLN3-203ENST00000357806 NGDNQ8NEJ9 315 aaKnown RBP23.99■■□□□ 1.43
CLN3-203ENST00000357806 POLR3AO14802 1390 aaPredicted RBP23.97■■□□□ 1.43
CLN3-203ENST00000357806 USP47Q96K76 1375 aa23.97■■□□□ 1.43
CLN3-203ENST00000357806 NUTM2BA6NNL0 878 aaPredicted RBP23.97■■□□□ 1.43
CLN3-203ENST00000357806 NUTM2EB1AL46 878 aaPredicted RBP23.97■■□□□ 1.43
CLN3-203ENST00000357806 NUTM2AQ8IVF1 878 aaPredicted RBP23.97■■□□□ 1.43
CLN3-203ENST00000357806 MEX3CQ5U5Q3 659 aaKnown RBP23.96■■□□□ 1.43
CLN3-203ENST00000357806 CRYBG1Q9Y4K1 1723 aa23.96■■□□□ 1.43
CLN3-203ENST00000357806 ARHGEF10O15013 1369 aa23.94■■□□□ 1.42
CLN3-203ENST00000357806 ATAD2Q6PL18 1390 aa23.94■■□□□ 1.42
CLN3-203ENST00000357806 PLEKHG3A1L390 1219 aa23.94■■□□□ 1.42
CLN3-203ENST00000357806 ACEP12821 1306 aa23.93■■□□□ 1.42
CLN3-203ENST00000357806 MON2Q7Z3U7 1717 aa23.92■■□□□ 1.42
CLN3-203ENST00000357806 ST20-MTHFSA0A0A6YYL1 179 aa23.92■■□□□ 1.42
CLN3-203ENST00000357806 PHRF1Q9P1Y6 1649 aaKnown RBP23.9■■□□□ 1.42
CLN3-203ENST00000357806 SLC24A1O60721 1099 aa23.89■■□□□ 1.42
CLN3-203ENST00000357806 NRKQ7Z2Y5 1582 aa23.89■■□□□ 1.41
CLN3-203ENST00000357806 LMOD2Q6P5Q4 547 aa23.88■■□□□ 1.41
CLN3-203ENST00000357806 TESK2Q96S53 571 aa23.88■■□□□ 1.41
CLN3-203ENST00000357806 PAK3O75914 559 aaPredicted RBP23.87■■□□□ 1.41
CLN3-203ENST00000357806 CABP1Q9NZU7 370 aa23.87■■□□□ 1.41
CLN3-203ENST00000357806 ADAMTS2O95450 1211 aa23.86■■□□□ 1.41
CLN3-203ENST00000357806 BRD4O60885 1362 aaPredicted RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms