RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 UBTFL1P0CB47 393 aaPredicted RBP21.88■■□□□ 1.09
COL18A1-202ENST00000355480 SAFBQ15424 915 aaKnown RBP eCLIP21.87■■□□□ 1.09
COL18A1-202ENST00000355480 SMARCA4P51532 1647 aa21.87■■□□□ 1.09
COL18A1-202ENST00000355480 ZNF592Q92610 1267 aa21.86■■□□□ 1.09
COL18A1-202ENST00000355480 FGD5Q6ZNL6 1462 aa21.86■■□□□ 1.09
COL18A1-202ENST00000355480 CNKSR2Q8WXI2 1034 aa21.85■■□□□ 1.09
COL18A1-202ENST00000355480 GPRASP1Q5JY77 1395 aa21.85■■□□□ 1.09
COL18A1-202ENST00000355480 ABTB2Q8N961 1025 aa21.84■■□□□ 1.09
COL18A1-202ENST00000355480 RAD54L2Q9Y4B4 1467 aa21.83■■□□□ 1.09
COL18A1-202ENST00000355480 ESCO1Q5FWF5 840 aa21.83■■□□□ 1.08
COL18A1-202ENST00000355480 FAM177BA6PVY3 158 aa21.82■■□□□ 1.08
COL18A1-202ENST00000355480 KIF7Q2M1P5 1343 aa21.82■■□□□ 1.08
COL18A1-202ENST00000355480 FGD6Q6ZV73 1430 aa21.82■■□□□ 1.08
COL18A1-202ENST00000355480 IGF1RP08069 1367 aa21.82■■□□□ 1.08
COL18A1-202ENST00000355480 ANKRD50Q9ULJ7 1429 aa21.81■■□□□ 1.08
COL18A1-202ENST00000355480 CHMP5Q9NZZ3 219 aa21.81■■□□□ 1.08
COL18A1-202ENST00000355480 MTMR7Q9Y216 660 aa21.81■■□□□ 1.08
COL18A1-202ENST00000355480 PANK1Q8TE04 598 aa21.8■■□□□ 1.08
COL18A1-202ENST00000355480 GSE1Q14687 1217 aa21.8■■□□□ 1.08
COL18A1-202ENST00000355480 PRDM2Q13029 1718 aa21.8■■□□□ 1.08
COL18A1-202ENST00000355480 CCDC73Q6ZRK6 1079 aa21.8■■□□□ 1.08
COL18A1-202ENST00000355480 CCDC7Q96M83 1385 aa21.8■■□□□ 1.08
COL18A1-202ENST00000355480 MTHFSP49914 203 aa21.79■■□□□ 1.08
COL18A1-202ENST00000355480 SASS6Q6UVJ0 657 aa21.79■■□□□ 1.08
COL18A1-202ENST00000355480 TXNDC2Q86VQ3 553 aa21.79■■□□□ 1.08
COL18A1-202ENST00000355480 GPS2Q13227 327 aa21.79■■□□□ 1.08
COL18A1-202ENST00000355480 RBM42Q9BTD8 480 aaKnown RBP21.79■■□□□ 1.08
COL18A1-202ENST00000355480 CUX1P39880 1505 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 PROSER2Q86WR7 435 aaPredicted RBP21.78■■□□□ 1.08
COL18A1-202ENST00000355480 HOMER1Q86YM7 354 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 GAS2L2Q8NHY3 880 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 FSD1Q9BTV5 496 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 CCDC30Q5VVM6 783 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 BRMS1Q9HCU9 246 aa21.78■■□□□ 1.08
COL18A1-202ENST00000355480 AFAP1Q8N556 730 aa21.77■■□□□ 1.08
COL18A1-202ENST00000355480 NINLQ9Y2I6 1382 aa21.77■■□□□ 1.08
COL18A1-202ENST00000355480 IKQ13123 557 aaPredicted RBP21.77■■□□□ 1.08
COL18A1-202ENST00000355480 PLEKHO1Q53GL0 409 aaPredicted RBP21.77■■□□□ 1.08
COL18A1-202ENST00000355480 NUCB2P80303 420 aa21.77■■□□□ 1.08
COL18A1-202ENST00000355480 KIF6Q6ZMV9 814 aa21.76■■□□□ 1.07
COL18A1-202ENST00000355480 STRN4Q9NRL3 753 aa21.76■■□□□ 1.07
COL18A1-202ENST00000355480 TBC1D2BQ9UPU7 963 aa21.76■■□□□ 1.07
COL18A1-202ENST00000355480 WASHC2AQ641Q2 1341 aa21.76■■□□□ 1.07
COL18A1-202ENST00000355480 CNTROBQ8N137 903 aa21.76■■□□□ 1.07
COL18A1-202ENST00000355480 AQRO60306 1485 aaKnown RBP eCLIP21.75■■□□□ 1.072e-7■■■■□ 26.2
COL18A1-202ENST00000355480 CDC45O75419 566 aa21.75■■□□□ 1.07
COL18A1-202ENST00000355480 CFAP70Q5T0N1 1121 aa21.75■■□□□ 1.07
COL18A1-202ENST00000355480 CLASRPQ8N2M8 674 aaKnown RBP21.75■■□□□ 1.07
COL18A1-202ENST00000355480 KRI1Q8N9T8 703 aaKnown RBP21.75■■□□□ 1.07
COL18A1-202ENST00000355480 C22orf23Q9BZE7 217 aa21.75■■□□□ 1.07
COL18A1-202ENST00000355480 ARHGAP5Q13017 1502 aa21.75■■□□□ 1.07
COL18A1-202ENST00000355480 XBP1P17861 261 aa21.75■■□□□ 1.07
COL18A1-202ENST00000355480 GNAI3P08754 354 aa21.74■■□□□ 1.07
COL18A1-202ENST00000355480 SURF6O75683 361 aaKnown RBP21.74■■□□□ 1.07
COL18A1-202ENST00000355480 DNAJC2Q99543 621 aaKnown RBP21.73■■□□□ 1.07
COL18A1-202ENST00000355480 KDM4AO75164 1064 aa21.73■■□□□ 1.07
COL18A1-202ENST00000355480 PSMA5P28066 241 aa21.73■■□□□ 1.07
COL18A1-202ENST00000355480 ADAMTS8Q9UP79 889 aa21.73■■□□□ 1.07
COL18A1-202ENST00000355480 NAP1L1P55209 391 aaKnown RBP21.73■■□□□ 1.07
COL18A1-202ENST00000355480 AAMPQ13685 434 aa21.73■■□□□ 1.07
COL18A1-202ENST00000355480 R3HCC1Q9Y3T6 440 aaKnown RBP21.73■■□□□ 1.07
COL18A1-202ENST00000355480 CT47A1Q5JQC4 288 aaPredicted RBP21.72■■□□□ 1.07
COL18A1-202ENST00000355480 TCP11L2Q8N4U5 519 aa21.72■■□□□ 1.07
COL18A1-202ENST00000355480 PRKAR2BP31323 418 aa21.72■■□□□ 1.07
COL18A1-202ENST00000355480 SART3Q15020 963 aaKnown RBP21.72■■□□□ 1.07
COL18A1-202ENST00000355480 RRBP1Q9P2E9 1410 aaKnown RBP21.72■■□□□ 1.07
COL18A1-202ENST00000355480 FBXO3Q9UK99 471 aa21.71■■□□□ 1.07
COL18A1-202ENST00000355480 PRAM1Q96QH2 718 aa21.71■■□□□ 1.07
COL18A1-202ENST00000355480 FYCO1Q9BQS8 1478 aa21.71■■□□□ 1.07
COL18A1-202ENST00000355480 SMG6Q86US8 1419 aaKnown RBP21.7■■□□□ 1.07
COL18A1-202ENST00000355480 TATP17735 454 aaPredicted RBP21.69■■□□□ 1.06
COL18A1-202ENST00000355480 SETQ01105 290 aaPredicted RBP21.69■■□□□ 1.06
COL18A1-202ENST00000355480 CNTLNQ9NXG0 1405 aa21.69■■□□□ 1.06
COL18A1-202ENST00000355480 EPS15P42566 896 aa21.68■■□□□ 1.06
COL18A1-202ENST00000355480 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.68■■□□□ 1.06
COL18A1-202ENST00000355480 ODF2Q5BJF6 829 aa21.68■■□□□ 1.06
COL18A1-202ENST00000355480 DCAF8L1A6NGE4 600 aa21.67■■□□□ 1.06
COL18A1-202ENST00000355480 OLFM4Q6UX06 510 aa21.67■■□□□ 1.06
COL18A1-202ENST00000355480 CNNM1Q9NRU3 951 aa21.67■■□□□ 1.06
COL18A1-202ENST00000355480 PATL2C9JE40 543 aaKnown RBP21.66■■□□□ 1.06
COL18A1-202ENST00000355480 HSP90AA2PQ14568 343 aaPredicted RBP21.66■■□□□ 1.06
COL18A1-202ENST00000355480 TWISTNBQ3B726 338 aaPredicted RBP21.66■■□□□ 1.06
COL18A1-202ENST00000355480 OFD1O75665 1012 aa21.66■■□□□ 1.06
COL18A1-202ENST00000355480 SDF4Q9BRK5 362 aa21.66■■□□□ 1.06
COL18A1-202ENST00000355480 SLC3A2P08195 630 aaKnown RBP21.65■■□□□ 1.06
COL18A1-202ENST00000355480 EXOSC9Q06265 439 aaKnown RBP21.65■■□□□ 1.06
COL18A1-202ENST00000355480 NCOA2Q15596 1464 aa21.65■■□□□ 1.06
COL18A1-202ENST00000355480 BRD4O60885 1362 aaPredicted RBP21.65■■□□□ 1.06
COL18A1-202ENST00000355480 PPP1R1BQ9UD71 204 aaPredicted RBP21.65■■□□□ 1.06
COL18A1-202ENST00000355480 RRP12Q5JTH9 1297 aaKnown RBP21.64■■□□□ 1.06
COL18A1-202ENST00000355480 ATP2B1P20020 1258 aa21.64■■□□□ 1.05
COL18A1-202ENST00000355480 THEMISQ8N1K5 641 aaPredicted RBP21.64■■□□□ 1.05
COL18A1-202ENST00000355480 PPP2R1AP30153 589 aa21.64■■□□□ 1.05
COL18A1-202ENST00000355480 NAT10Q9H0A0 1025 aaKnown RBP21.64■■□□□ 1.05
COL18A1-202ENST00000355480 TTC39AQ5SRH9 613 aa21.63■■□□□ 1.05
COL18A1-202ENST00000355480 CABP4P57796 275 aa21.63■■□□□ 1.05
COL18A1-202ENST00000355480 TOM1L2Q6ZVM7 507 aa21.63■■□□□ 1.05
COL18A1-202ENST00000355480 NUTM2BA6NNL0 878 aaPredicted RBP21.63■■□□□ 1.05
COL18A1-202ENST00000355480 NUTM2EB1AL46 878 aaPredicted RBP21.63■■□□□ 1.05
COL18A1-202ENST00000355480 NUTM2AQ8IVF1 878 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms