RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 DISP3Q9P2K9 1392 aa26.63■■□□□ 1.85
CHMP4A-201ENST00000347519 SBNO2Q9Y2G9 1366 aa26.61■■□□□ 1.85
CHMP4A-201ENST00000347519 MINK1Q8N4C8 1332 aaPredicted RBP26.61■■□□□ 1.85
CHMP4A-201ENST00000347519 TULP4Q9NRJ4 1543 aa26.59■■□□□ 1.85
CHMP4A-201ENST00000347519 ZNF335Q9H4Z2 1342 aaPredicted RBP26.59■■□□□ 1.85
CHMP4A-201ENST00000347519 RBM33Q96EV2 1170 aaKnown RBP26.58■■□□□ 1.85
CHMP4A-201ENST00000347519 WASHC2AQ641Q2 1341 aa26.58■■□□□ 1.85
CHMP4A-201ENST00000347519 KIF7Q2M1P5 1343 aa26.56■■□□□ 1.84
CHMP4A-201ENST00000347519 NKTRP30414 1462 aaKnown RBP26.56■■□□□ 1.84
CHMP4A-201ENST00000347519 CCDC7Q96M83 1385 aa26.56■■□□□ 1.84
CHMP4A-201ENST00000347519 TMF1P82094 1093 aa26.55■■□□□ 1.84
CHMP4A-201ENST00000347519 NALCNQ8IZF0 1738 aa26.54■■□□□ 1.84
CHMP4A-201ENST00000347519 ADGRB2O60241 1585 aa26.52■■□□□ 1.84
CHMP4A-201ENST00000347519 PROSER2Q86WR7 435 aaPredicted RBP26.52■■□□□ 1.84
CHMP4A-201ENST00000347519 XIRP1Q702N8 1843 aaKnown RBP26.52■■□□□ 1.84
CHMP4A-201ENST00000347519 POLR3GLQ9BT43 218 aa26.5■■□□□ 1.83
CHMP4A-201ENST00000347519 EVC2Q86UK5 1308 aa26.48■■□□□ 1.83
CHMP4A-201ENST00000347519 LRRC7Q96NW7 1537 aa26.48■■□□□ 1.83
CHMP4A-201ENST00000347519 CDK19Q9BWU1 502 aa26.47■■□□□ 1.83
CHMP4A-201ENST00000347519 TMEM94Q12767 1356 aa26.47■■□□□ 1.83
CHMP4A-201ENST00000347519 CABP2Q9NPB3 220 aa26.46■■□□□ 1.83
CHMP4A-201ENST00000347519 WASLO00401 505 aaPredicted RBP26.46■■□□□ 1.83
CHMP4A-201ENST00000347519 SLC24A1O60721 1099 aa26.46■■□□□ 1.83
CHMP4A-201ENST00000347519 ADGRL3Q9HAR2 1447 aa26.45■■□□□ 1.82
CHMP4A-201ENST00000347519 LTBP4Q8N2S1 1624 aa26.45■■□□□ 1.82
CHMP4A-201ENST00000347519 MYOM1P52179 1685 aa26.44■■□□□ 1.82
CHMP4A-201ENST00000347519 SRPK2P78362 688 aaKnown RBP26.42■■□□□ 1.82
CHMP4A-201ENST00000347519 FMN2Q9NZ56 1722 aa26.41■■□□□ 1.82
CHMP4A-201ENST00000347519 DDX10Q13206 875 aaKnown RBP26.41■■□□□ 1.82
CHMP4A-201ENST00000347519 CDC42BPGQ6DT37 1551 aa26.41■■□□□ 1.82
CHMP4A-201ENST00000347519 USP32Q8NFA0 1604 aa26.4■■□□□ 1.82
CHMP4A-201ENST00000347519 IQSEC2Q5JU85 1478 aa26.4■■□□□ 1.82
CHMP4A-201ENST00000347519 CDCA8Q53HL2 280 aa26.4■■□□□ 1.82
CHMP4A-201ENST00000347519 PRR36Q9H6K5 1346 aa26.39■■□□□ 1.82
CHMP4A-201ENST00000347519 C14orf37Q86TY3 774 aa26.39■■□□□ 1.82
CHMP4A-201ENST00000347519 RGPD8O14715 1765 aaPredicted RBP26.39■■□□□ 1.82
CHMP4A-201ENST00000347519 NCOA3Q9Y6Q9 1424 aa26.38■■□□□ 1.81
CHMP4A-201ENST00000347519 PUS7Q96PZ0 661 aaKnown RBP26.38■■□□□ 1.81
CHMP4A-201ENST00000347519 NUTM2FA1L443 756 aa26.37■■□□□ 1.81
CHMP4A-201ENST00000347519 ATP7BP35670 1465 aa26.36■■□□□ 1.81
CHMP4A-201ENST00000347519 NUDT16Q96DE0 195 aaKnown RBP26.34■■□□□ 1.81
CHMP4A-201ENST00000347519 TOPAZ1Q8N9V7 1692 aa26.34■■□□□ 1.81
CHMP4A-201ENST00000347519 C19orf44Q9H6X5 657 aa26.33■■□□□ 1.81
CHMP4A-201ENST00000347519 ATAD2Q6PL18 1390 aa26.33■■□□□ 1.81
CHMP4A-201ENST00000347519 SLC12A5Q9H2X9 1139 aa26.33■■□□□ 1.8
CHMP4A-201ENST00000347519 TMC1Q8TDI8 760 aa26.31■■□□□ 1.8
CHMP4A-201ENST00000347519 MSH6P52701 1360 aa26.29■■□□□ 1.8
CHMP4A-201ENST00000347519 CABP1Q9NZU7 370 aa26.28■■□□□ 1.8
CHMP4A-201ENST00000347519 PPIP5K1Q6PFW1 1433 aa26.28■■□□□ 1.8
CHMP4A-201ENST00000347519 ANKARQ7Z5J8 1434 aa26.28■■□□□ 1.8
CHMP4A-201ENST00000347519 ITSN1Q15811 1721 aa26.27■■□□□ 1.8
CHMP4A-201ENST00000347519 PANK3Q9H999 370 aa26.27■■□□□ 1.8
CHMP4A-201ENST00000347519 DCCP43146 1447 aa26.27■■□□□ 1.8
CHMP4A-201ENST00000347519 CD163L1Q9NR16 1453 aa26.27■■□□□ 1.8
CHMP4A-201ENST00000347519 CCDC61Q9Y6R9 512 aa26.26■■□□□ 1.79
CHMP4A-201ENST00000347519 MST1RQ04912 1400 aa26.25■■□□□ 1.79
CHMP4A-201ENST00000347519 ATF3P18847 181 aa26.23■■□□□ 1.79
CHMP4A-201ENST00000347519 C1orf167Q5SNV9 1468 aa26.23■■□□□ 1.79
CHMP4A-201ENST00000347519 NINLQ9Y2I6 1382 aa26.23■■□□□ 1.79
CHMP4A-201ENST00000347519 CARD14Q9BXL6 1004 aa26.21■■□□□ 1.79
CHMP4A-201ENST00000347519 AKAP12Q02952 1782 aa26.21■■□□□ 1.79
CHMP4A-201ENST00000347519 DIEXFQ68CQ4 756 aaKnown RBP26.2■■□□□ 1.79
CHMP4A-201ENST00000347519 CADPS2Q86UW7 1296 aa26.2■■□□□ 1.79
CHMP4A-201ENST00000347519 A0A1W2PP64 1363 aa26.2■■□□□ 1.78
CHMP4A-201ENST00000347519 PLEKHG3A1L390 1219 aa26.2■■□□□ 1.78
CHMP4A-201ENST00000347519 PMFBP1Q8TBY8 1022 aa26.2■■□□□ 1.78
CHMP4A-201ENST00000347519 ANKRD36BQ8N2N9 1353 aa26.19■■□□□ 1.78
CHMP4A-201ENST00000347519 PER1O15534 1290 aaPredicted RBP26.19■■□□□ 1.78
CHMP4A-201ENST00000347519 ORAI2Q96SN7 254 aa26.19■■□□□ 1.78
CHMP4A-201ENST00000347519 CPSF1Q10570 1443 aaKnown RBP26.18■■□□□ 1.78
CHMP4A-201ENST00000347519 ACEP12821 1306 aa26.16■■□□□ 1.78
CHMP4A-201ENST00000347519 MON2Q7Z3U7 1717 aa26.16■■□□□ 1.78
CHMP4A-201ENST00000347519 ESCO1Q5FWF5 840 aa26.16■■□□□ 1.78
CHMP4A-201ENST00000347519 PHF8Q9UPP1 1060 aa26.15■■□□□ 1.78
CHMP4A-201ENST00000347519 UBAP1LF5GYI3 381 aa26.14■■□□□ 1.78
CHMP4A-201ENST00000347519 NSD3Q9BZ95 1437 aa26.13■■□□□ 1.77
CHMP4A-201ENST00000347519 TERF2IPQ9NYB0 399 aa26.13■■□□□ 1.77
CHMP4A-201ENST00000347519 POLR3AO14802 1390 aaPredicted RBP26.13■■□□□ 1.77
CHMP4A-201ENST00000347519 HDGFL2Q7Z4V5 671 aaPredicted RBP26.12■■□□□ 1.77
CHMP4A-201ENST00000347519 SLAIN2Q9P270 581 aa26.11■■□□□ 1.77
CHMP4A-201ENST00000347519 KIF1AQ12756 1690 aa26.11■■□□□ 1.77
CHMP4A-201ENST00000347519 KTN1Q86UP2 1357 aaKnown RBP26.1■■□□□ 1.77
CHMP4A-201ENST00000347519 NRKQ7Z2Y5 1582 aa26.1■■□□□ 1.77
CHMP4A-201ENST00000347519 NGDNQ8NEJ9 315 aaKnown RBP26.09■■□□□ 1.77
CHMP4A-201ENST00000347519 USP6P35125 1406 aa26.07■■□□□ 1.76
CHMP4A-201ENST00000347519 CNGB1Q14028 1251 aaPredicted RBP26.07■■□□□ 1.76
CHMP4A-201ENST00000347519 AMER1Q5JTC6 1135 aaPredicted RBP26.07■■□□□ 1.76
CHMP4A-201ENST00000347519 BRINP3Q76B58 766 aa26.07■■□□□ 1.76
CHMP4A-201ENST00000347519 KNSTRNQ9Y448 316 aa26.07■■□□□ 1.76
CHMP4A-201ENST00000347519 ZNF692Q9BU19 519 aaPredicted RBP26.06■■□□□ 1.76
CHMP4A-201ENST00000347519 SSH2Q76I76 1423 aa26.05■■□□□ 1.76
CHMP4A-201ENST00000347519 DDX17Q92841 729 aaKnown RBP26.05■■□□□ 1.76
CHMP4A-201ENST00000347519 EDC4Q6P2E9 1401 aaKnown RBP26.04■■□□□ 1.76
CHMP4A-201ENST00000347519 FOXO3O43524 673 aa26.04■■□□□ 1.76
CHMP4A-201ENST00000347519 KIF20BQ96Q89 1820 aa26.03■■□□□ 1.76
CHMP4A-201ENST00000347519 TOM1O60784 492 aa26.03■■□□□ 1.76
CHMP4A-201ENST00000347519 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.02■■□□□ 1.76
CHMP4A-201ENST00000347519 XPCQ01831 940 aaPredicted RBP26.01■■□□□ 1.75
CHMP4A-201ENST00000347519 CC2D1BQ5T0F9 858 aaKnown RBP26.01■■□□□ 1.75
CHMP4A-201ENST00000347519 TTC21BQ7Z4L5 1316 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms