RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 IPO7O95373 1038 aaKnown RBP5.03□□□□□ -1.6
NEDD4-201ENST00000338963 MBD3O95983 291 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 BMS1Q14692 1282 aaKnown RBP5.03□□□□□ -1.6
NEDD4-201ENST00000338963 FMNL3Q8IVF7 1028 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 KCNG1Q9UIX4 513 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 PIBF1Q8WXW3 757 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 KIAA1107Q9UPP5 1409 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 CTAGE5O15320 804 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 ZNF397Q8NF99 534 aaPredicted RBP5.03□□□□□ -1.6
NEDD4-201ENST00000338963 AKNAQ7Z591 1439 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 DHX16O60231 1041 aaKnown RBP5.03□□□□□ -1.6
NEDD4-201ENST00000338963 NUCKS1Q9H1E3 243 aaKnown RBP5.03□□□□□ -1.6
NEDD4-201ENST00000338963 KIF2AO00139 706 aaPredicted RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ATP2B3Q16720 1220 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ANTXR1Q9H6X2 564 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 IRX1P78414 480 aaPredicted RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ERCC4Q92889 916 aaPredicted RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 NOL10Q9BSC4 688 aaKnown RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 CCDC88BA6NC98 1476 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 PLEKHH2Q8IVE3 1493 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 DHX8Q14562 1220 aaKnown RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 DDX49Q9Y6V7 483 aaKnown RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 TTC31Q49AM3 519 aaPredicted RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ERICH3Q5RHP9 1530 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 CGNL1Q0VF96 1302 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 SWT1Q5T5J6 900 aaKnown RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 JMYQ8N9B5 988 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ANKRD7Q92527 254 aa5.02□□□□□ -1.61
NEDD4-201ENST00000338963 MORC2Q9Y6X9 1032 aaPredicted RBP5.02□□□□□ -1.61
NEDD4-201ENST00000338963 ATP8B1O43520 1251 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 MCTP2Q6DN12 878 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 NGEFQ8N5V2 710 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 PMFBP1Q8TBY8 1022 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 ITFG2Q969R8 447 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 ANAPC4Q9UJX5 808 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 BRD4O60885 1362 aaPredicted RBP5.01□□□□□ -1.61
NEDD4-201ENST00000338963 LOC102724159A0A0B4J2E5 919 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 MAP2K2P36507 400 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 PWP2Q15269 919 aaKnown RBP5.01□□□□□ -1.61
NEDD4-201ENST00000338963 SLFNL1Q499Z3 407 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 KDM2BQ8NHM5 1336 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 PLEKHD1A6NEE1 506 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 ANKRD20A12PQ8NF67 263 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 TMCO5BA8MYB1 307 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 SOX12O15370 315 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 TPM1P09493 284 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 GIMAP7Q8NHV1 300 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 JRKLQ9Y4A0 524 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 ANKRD30AQ9BXX3 1397 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 TMED8Q6PL24 325 aaPredicted RBP5.01□□□□□ -1.61
NEDD4-201ENST00000338963 DHX29Q7Z478 1369 aaKnown RBP5.01□□□□□ -1.61
NEDD4-201ENST00000338963 CCDC7Q96M83 1385 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 NOLC1Q14978 699 aaKnown RBP eCLIP5.01□□□□□ -1.61
NEDD4-201ENST00000338963 PPM1EQ8WY54 764 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 SLC52A1Q9NWF4 448 aa5.01□□□□□ -1.61
NEDD4-201ENST00000338963 SNX21Q969T3 373 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 DDX41Q9UJV9 622 aaKnown RBP5□□□□□ -1.61
NEDD4-201ENST00000338963 PLEKHH1Q9ULM0 1364 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 TTLL5Q6EMB2 1281 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 TBC1D22AQ8WUA7 517 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 CEP89Q96ST8 783 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 NPC1L1Q9UHC9 1359 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 ZRSR2Q15696 482 aaKnown RBP5□□□□□ -1.61
NEDD4-201ENST00000338963 SMC5Q8IY18 1101 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 HMGB1P1B2RPK0 211 aaPredicted RBP5□□□□□ -1.61
NEDD4-201ENST00000338963 CYP2C19P33261 490 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 CCDC112Q8NEF3 446 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 SMTNL1A8MU46 457 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 SLFN14P0C7P3 912 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 LEKR1Q6ZMV7 388 aa5□□□□□ -1.61
NEDD4-201ENST00000338963 SUGP1Q8IWZ8 645 aaKnown RBP5□□□□□ -1.61
NEDD4-201ENST00000338963 HIRIP3Q9BW71 556 aaPredicted RBP5□□□□□ -1.61
NEDD4-201ENST00000338963 BCL2L12Q9HB09 334 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 JAKMIP3Q5VZ66 844 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 CERS3Q8IU89 383 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 TBC1D32Q96NH3 1257 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 MTUS2Q5JR59 1369 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 AP1ARQ63HQ0 302 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 ZMYM4Q5VZL5 1548 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 ATAD2Q6PL18 1390 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 FAM43BQ6ZT52 329 aaPredicted RBP4.99□□□□□ -1.61
NEDD4-201ENST00000338963 TBC1D2Q9BYX2 928 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 KCNA4P22459 653 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 RDXP35241 583 aaKnown RBP4.99□□□□□ -1.61
NEDD4-201ENST00000338963 CT47A1Q5JQC4 288 aaPredicted RBP4.99□□□□□ -1.61
NEDD4-201ENST00000338963 CXorf56Q9H5V9 222 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 SUFUQ9UMX1 484 aa4.99□□□□□ -1.61
NEDD4-201ENST00000338963 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.99□□□□□ -1.61
NEDD4-201ENST00000338963 CTIFO43310 598 aaKnown RBP4.99□□□□□ -1.61
NEDD4-201ENST00000338963 ATP2B1P20020 1258 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 FKBP5Q13451 457 aaPredicted RBP4.98□□□□□ -1.61
NEDD4-201ENST00000338963 MMS22LQ6ZRQ5 1243 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 CLEC17AQ6ZS10 378 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 CDCA8Q53HL2 280 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 P3H3Q8IVL6 736 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 ZNF526Q8TF50 670 aaPredicted RBP4.98□□□□□ -1.61
NEDD4-201ENST00000338963 DDX11Q96FC9 970 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 KLHL33A6NCF5 533 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 GOLGA5Q8TBA6 731 aa4.98□□□□□ -1.61
NEDD4-201ENST00000338963 RWDD1Q9H446 243 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms