RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 DIAPH1O60610 1272 aaKnown RBP10.38□□□□□ -0.75
HPS4-201ENST00000336873 RBM33Q96EV2 1170 aaKnown RBP10.38□□□□□ -0.75
HPS4-201ENST00000336873 DNMT1P26358 1616 aaKnown RBP10.38□□□□□ -0.75
HPS4-201ENST00000336873 MIS18AQ9NYP9 233 aa10.37□□□□□ -0.75
HPS4-201ENST00000336873 PLCB2Q00722 1185 aa10.37□□□□□ -0.75
HPS4-201ENST00000336873 NAP1L5Q96NT1 182 aaPredicted RBP10.37□□□□□ -0.75
HPS4-201ENST00000336873 PCDHB15Q9Y5E8 787 aa10.37□□□□□ -0.75
HPS4-201ENST00000336873 NSD3Q9BZ95 1437 aa10.36□□□□□ -0.75
HPS4-201ENST00000336873 TRAPPC8Q9Y2L5 1435 aa10.36□□□□□ -0.75
HPS4-201ENST00000336873 IDI1Q13907 227 aa10.36□□□□□ -0.75
HPS4-201ENST00000336873 PRAG1Q86YV5 1406 aa10.35□□□□□ -0.75
HPS4-201ENST00000336873 CROCC2H7BZ55 1655 aa10.35□□□□□ -0.75
HPS4-201ENST00000336873 SYCP2Q9BX26 1530 aa10.35□□□□□ -0.75
HPS4-201ENST00000336873 NCKAP5LQ9HCH0 1330 aa10.35□□□□□ -0.75
HPS4-201ENST00000336873 RARSP54136 660 aaKnown RBP10.35□□□□□ -0.75
HPS4-201ENST00000336873 TRIM44Q96DX7 344 aaPredicted RBP10.35□□□□□ -0.75
HPS4-201ENST00000336873 IPO8O15397 1037 aaKnown RBP10.34□□□□□ -0.75
HPS4-201ENST00000336873 SSH1Q8WYL5 1049 aa10.34□□□□□ -0.75
HPS4-201ENST00000336873 PARD3Q8TEW0 1356 aa10.34□□□□□ -0.75
HPS4-201ENST00000336873 ZRANB1Q9UGI0 708 aa10.34□□□□□ -0.75
HPS4-201ENST00000336873 FAM83GA6ND36 823 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 TMEM57Q8N5G2 664 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 ANP32BQ92688 251 aaKnown RBP10.33□□□□□ -0.76
HPS4-201ENST00000336873 CDK19Q9BWU1 502 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 C22orf23Q9BZE7 217 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 SLC26A8Q96RN1 970 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 EMILIN1Q9Y6C2 1016 aa10.33□□□□□ -0.76
HPS4-201ENST00000336873 CD109Q6YHK3 1445 aa10.32□□□□□ -0.76
HPS4-201ENST00000336873 LRPPRCP42704 1394 aaKnown RBP10.32□□□□□ -0.76
HPS4-201ENST00000336873 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
HPS4-201ENST00000336873 CCDC9Q9Y3X0 531 aaKnown RBP10.32□□□□□ -0.76
HPS4-201ENST00000336873 FAM135AQ9P2D6 1515 aa10.32□□□□□ -0.76
HPS4-201ENST00000336873 C8orf34Q49A92 452 aa10.31□□□□□ -0.76
HPS4-201ENST00000336873 VSIG10Q8N0Z9 540 aa10.31□□□□□ -0.76
HPS4-201ENST00000336873 RTF1Q92541 710 aaKnown RBP10.31□□□□□ -0.76
HPS4-201ENST00000336873 RALGAPBQ86X10 1494 aa10.31□□□□□ -0.76
HPS4-201ENST00000336873 A0A0U1RQG5 324 aaPredicted RBP10.31□□□□□ -0.76
HPS4-201ENST00000336873 TRIM6-TRIM34B2RNG4 842 aa10.31□□□□□ -0.76
HPS4-201ENST00000336873 NOS1P29475 1434 aa10.3□□□□□ -0.76
HPS4-201ENST00000336873 EIF2S2P20042 333 aaKnown RBP10.3□□□□□ -0.76
HPS4-201ENST00000336873 TMPOP42166 694 aaKnown RBP10.3□□□□□ -0.76
HPS4-201ENST00000336873 CDC42BPAQ5VT25 1732 aa10.3□□□□□ -0.76
HPS4-201ENST00000336873 A2MP01023 1474 aa10.3□□□□□ -0.76
HPS4-201ENST00000336873 COG3Q96JB2 828 aa10.3□□□□□ -0.76
HPS4-201ENST00000336873 PLCH2O75038 1416 aa10.3□□□□□ -0.76
HPS4-201ENST00000336873 TRIM27P14373 513 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 OS9Q13438 667 aaPredicted RBP10.29□□□□□ -0.76
HPS4-201ENST00000336873 RILPL2Q969X0 211 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 ADGRL1O94910 1474 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 AMPHP49418 695 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 KRT24Q2M2I5 525 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 NME9Q86XW9 330 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 MPNDQ8N594 471 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 USP35Q9P2H5 1018 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 DDX19BQ9UMR2 479 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 ASXL2Q76L83 1435 aa10.29□□□□□ -0.76
HPS4-201ENST00000336873 PDE3AQ14432 1141 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 SULT6B1Q6IMI4 303 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 FANCAO15360 1455 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 MVPQ14764 893 aaKnown RBP10.28□□□□□ -0.76
HPS4-201ENST00000336873 MCM10Q7L590 875 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 ABCC2Q92887 1545 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 ATF7IPQ6VMQ6 1270 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 NGEFQ8N5V2 710 aa10.28□□□□□ -0.76
HPS4-201ENST00000336873 GOLGA6L3A6NEY3 463 aa10.27□□□□□ -0.76
HPS4-201ENST00000336873 ADGBQ8N7X0 1667 aa10.27□□□□□ -0.77
HPS4-201ENST00000336873 GOLGA6L22H0YM25 854 aa10.27□□□□□ -0.77
HPS4-201ENST00000336873 SMARCA5O60264 1052 aaPredicted RBP10.27□□□□□ -0.77
HPS4-201ENST00000336873 DTNBO60941 627 aa10.27□□□□□ -0.77
HPS4-201ENST00000336873 HDGFP51858 240 aaKnown RBP10.27□□□□□ -0.77
HPS4-201ENST00000336873 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.26□□□□□ -0.77
HPS4-201ENST00000336873 TSHZ3Q63HK5 1081 aa10.26□□□□□ -0.77
HPS4-201ENST00000336873 PNNQ9H307 717 aaKnown RBP10.26□□□□□ -0.77
HPS4-201ENST00000336873 ZNF330Q9Y3S2 320 aaPredicted RBP10.26□□□□□ -0.77
HPS4-201ENST00000336873 CEBPAP49715 358 aaPredicted RBP10.26□□□□□ -0.77
HPS4-201ENST00000336873 RBM42Q9BTD8 480 aaKnown RBP10.26□□□□□ -0.77
HPS4-201ENST00000336873 TWISTNBQ3B726 338 aaPredicted RBP10.25□□□□□ -0.77
HPS4-201ENST00000336873 TSPYL6Q8N831 410 aa10.25□□□□□ -0.77
HPS4-201ENST00000336873 TBC1D2Q9BYX2 928 aa10.25□□□□□ -0.77
HPS4-201ENST00000336873 ITSN2Q9NZM3 1697 aa10.25□□□□□ -0.77
HPS4-201ENST00000336873 WDR7Q9Y4E6 1490 aa10.25□□□□□ -0.77
HPS4-201ENST00000336873 GPRASP1Q5JY77 1395 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 F6X3S4 739 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 FYB1O15117 783 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 PHACTR3Q96KR7 559 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 MAGI2Q86UL8 1455 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 NKTRP30414 1462 aaKnown RBP10.24□□□□□ -0.77
HPS4-201ENST00000336873 MAP4K4O95819 1239 aaPredicted RBP10.24□□□□□ -0.77
HPS4-201ENST00000336873 NAP1L2Q9ULW6 460 aaPredicted RBP10.24□□□□□ -0.77
HPS4-201ENST00000336873 DDX49Q9Y6V7 483 aaKnown RBP10.24□□□□□ -0.77
HPS4-201ENST00000336873 ABCA8O94911 1581 aa10.24□□□□□ -0.77
HPS4-201ENST00000336873 ATAD2Q6PL18 1390 aa10.23□□□□□ -0.77
HPS4-201ENST00000336873 TRPM1Q7Z4N2 1603 aa10.23□□□□□ -0.77
HPS4-201ENST00000336873 XPCQ01831 940 aaPredicted RBP10.23□□□□□ -0.77
HPS4-201ENST00000336873 FKBP5Q13451 457 aaPredicted RBP10.23□□□□□ -0.77
HPS4-201ENST00000336873 STAC3Q96MF2 364 aa10.23□□□□□ -0.77
HPS4-201ENST00000336873 PTMAP06454 111 aaKnown RBP10.23□□□□□ -0.77
HPS4-201ENST00000336873 KCNJ4P48050 445 aa10.23□□□□□ -0.77
HPS4-201ENST00000336873 CASC1Q6TDU7 716 aa10.23□□□□□ -0.77
HPS4-201ENST00000336873 KDM5DQ9BY66 1539 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms