RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PRKAR2AP13861 404 aaKnown RBP3.25□□□□□ -1.89
LINC00643-201ENST00000334389 ILDR2Q71H61 639 aa3.25□□□□□ -1.89
LINC00643-201ENST00000334389 DISP3Q9P2K9 1392 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 DLEC1Q9Y238 1755 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 BRD4O60885 1362 aaPredicted RBP3.24□□□□□ -1.89
LINC00643-201ENST00000334389 JCADQ9P266 1359 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 TECPR2O15040 1411 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 PXDNLA1KZ92 1463 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 MYOM2P54296 1465 aa3.24□□□□□ -1.89
LINC00643-201ENST00000334389 VIRMAQ69YN4 1812 aaKnown RBP3.24□□□□□ -1.89
LINC00643-201ENST00000334389 KIAA1551Q9HCM1 1747 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 RSPH4AQ5TD94 716 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 RGS12O14924 1447 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 IFFO2Q5TF58 517 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 WDR90Q96KV7 1748 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 MIA2Q96PC5 1412 aa3.23□□□□□ -1.89
LINC00643-201ENST00000334389 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.23□□□□□ -1.89
LINC00643-201ENST00000334389 PKD1L3Q7Z443 1732 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 ATAD2Q6PL18 1390 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 SCUBE2Q9NQ36 999 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 LY75O60449 1722 aa3.22□□□□□ -1.89
LINC00643-201ENST00000334389 ACIN1Q9UKV3 1341 aaKnown RBP3.21□□□□□ -1.89
LINC00643-201ENST00000334389 CCDC141Q6ZP82 1450 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 ARFGEF1Q9Y6D6 1849 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 PLEKHG1Q9ULL1 1385 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 SCAPERQ9BY12 1400 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 SPDYE1Q8NFV5 336 aaPredicted RBP3.21□□□□□ -1.9
LINC00643-201ENST00000334389 C4AP0C0L4 1744 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 C4BP0C0L5 1744 aa3.21□□□□□ -1.9
LINC00643-201ENST00000334389 ANKRD26Q9UPS8 1709 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 SLC39A7Q92504 469 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 DHX29Q7Z478 1369 aaKnown RBP3.2□□□□□ -1.9
LINC00643-201ENST00000334389 SLIT2O94813 1529 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 C7P10643 843 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 BLMP54132 1417 aaPredicted RBP3.2□□□□□ -1.9
LINC00643-201ENST00000334389 AKAP12Q02952 1782 aa3.2□□□□□ -1.9
LINC00643-201ENST00000334389 ARHGAP5Q13017 1502 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 SSC5DA1L4H1 1573 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 TMEM121BQ9BXQ6 578 aaPredicted RBP3.19□□□□□ -1.9
LINC00643-201ENST00000334389 BRCA1P38398 1863 aaKnown RBP3.19□□□□□ -1.9
LINC00643-201ENST00000334389 CLTCL1P53675 1640 aa3.19□□□□□ -1.9
LINC00643-201ENST00000334389 SLIT3O75094 1523 aa3.18□□□□□ -1.9
LINC00643-201ENST00000334389 HMGB2P26583 209 aaKnown RBP3.18□□□□□ -1.9
LINC00643-201ENST00000334389 ADGRB1O14514 1584 aa3.18□□□□□ -1.9
LINC00643-201ENST00000334389 PXDNQ92626 1479 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 NRXN1Q9ULB1 1477 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 ZNF772Q68DY9 489 aaPredicted RBP3.17□□□□□ -1.9
LINC00643-201ENST00000334389 TOM1O60784 492 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 LTBP1Q14766 1721 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 TNRQ92752 1358 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 RGS20O76081 388 aa3.17□□□□□ -1.9
LINC00643-201ENST00000334389 ATP7BP35670 1465 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 ZMYM3Q14202 1370 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 MYO5BQ9ULV0 1848 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 E9PCH4 1651 aa3.16□□□□□ -1.9
LINC00643-201ENST00000334389 ONECUT3O60422 494 aaPredicted RBP3.15□□□□□ -1.9
LINC00643-201ENST00000334389 FAM163AQ96GL9 167 aaPredicted RBP3.15□□□□□ -1.9
LINC00643-201ENST00000334389 MTUS2Q5JR59 1369 aa3.15□□□□□ -1.9
LINC00643-201ENST00000334389 COL18A1P39060 1754 aa3.15□□□□□ -1.9
LINC00643-201ENST00000334389 POTEB2H3BUK9 544 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 ANKARQ7Z5J8 1434 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 C5P01031 1676 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 LRRC37A3O60309 1634 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 ADCY9O60503 1353 aa3.15□□□□□ -1.91
LINC00643-201ENST00000334389 NSD3Q9BZ95 1437 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 NRXN2Q9P2S2 1712 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 SPATA31E1Q6ZUB1 1445 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 NRKQ7Z2Y5 1582 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 INSRP06213 1382 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 ADAMTSL1Q8N6G6 1762 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 SIRT1Q96EB6 747 aa3.14□□□□□ -1.91
LINC00643-201ENST00000334389 TUBGCP6Q96RT7 1819 aa3.13□□□□□ -1.91
LINC00643-201ENST00000334389 ADGRL3Q9HAR2 1447 aa3.13□□□□□ -1.91
LINC00643-201ENST00000334389 RGS17Q9UGC6 210 aaPredicted RBP3.13□□□□□ -1.91
LINC00643-201ENST00000334389 CAPN2P17655 700 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE2BA6NHP3 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE6P0CI01 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 CD44P16070 742 aaKnown RBP3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SPDYE2Q495Y8 402 aa3.12□□□□□ -1.91
LINC00643-201ENST00000334389 DICER1Q9UPY3 1922 aaKnown RBP3.12□□□□□ -1.91
LINC00643-201ENST00000334389 SBNO1A3KN83 1393 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 PTGER2P43116 358 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 UPF1Q92900 1129 aaKnown RBP eCLIP3.11□□□□□ -1.91
LINC00643-201ENST00000334389 FAM9AQ8IZU1 332 aaPredicted RBP3.11□□□□□ -1.91
LINC00643-201ENST00000334389 SCN7AQ01118 1682 aa3.11□□□□□ -1.91
LINC00643-201ENST00000334389 TTBK1Q5TCY1 1321 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 EFCAB2Q5VUJ9 269 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 TMEM2Q9UHN6 1383 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 BCORQ6W2J9 1755 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ZNF646O15015 1829 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 RAPGEF3O95398 923 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ARIH1Q9Y4X5 557 aaPredicted RBP3.1□□□□□ -1.91
LINC00643-201ENST00000334389 KDM3BQ7LBC6 1761 aa3.1□□□□□ -1.91
LINC00643-201ENST00000334389 ROCK1Q13464 1354 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 POLA2Q14181 598 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 ADAMTS13Q76LX8 1427 aa3.09□□□□□ -1.91
LINC00643-201ENST00000334389 TAF1LQ8IZX4 1826 aa3.09□□□□□ -1.92
LINC00643-201ENST00000334389 ASTLQ6HA08 431 aaPredicted RBP3.09□□□□□ -1.92
LINC00643-201ENST00000334389 FNBP4Q8N3X1 1017 aaPredicted RBP3.09□□□□□ -1.92
LINC00643-201ENST00000334389 PNPLA6Q8IY17 1366 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms