RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 WAPLQ7Z5K2 1190 aa26.09■■□□□ 1.77
HDDC3-201ENST00000330334 STAC3Q96MF2 364 aa26.09■■□□□ 1.77
HDDC3-201ENST00000330334 LAMC1P11047 1609 aa26.08■■□□□ 1.77
HDDC3-201ENST00000330334 DDX17Q92841 729 aaKnown RBP26.08■■□□□ 1.77
HDDC3-201ENST00000330334 SOS2Q07890 1332 aaPredicted RBP26.08■■□□□ 1.77
HDDC3-201ENST00000330334 MEX3CQ5U5Q3 659 aaKnown RBP26.07■■□□□ 1.76
HDDC3-201ENST00000330334 CDC42BPGQ6DT37 1551 aa26.07■■□□□ 1.76
HDDC3-201ENST00000330334 CFAP70Q5T0N1 1121 aa26.06■■□□□ 1.76
HDDC3-201ENST00000330334 ZNF772Q68DY9 489 aaPredicted RBP26.06■■□□□ 1.76
HDDC3-201ENST00000330334 DHX57Q6P158 1386 aaKnown RBP26.06■■□□□ 1.76
HDDC3-201ENST00000330334 KNDC1Q76NI1 1749 aa26.04■■□□□ 1.76
HDDC3-201ENST00000330334 PNPLA6Q8IY17 1366 aa26.04■■□□□ 1.76
HDDC3-201ENST00000330334 NUTM2BA6NNL0 878 aaPredicted RBP26.02■■□□□ 1.76
HDDC3-201ENST00000330334 NUTM2EB1AL46 878 aaPredicted RBP26.02■■□□□ 1.76
HDDC3-201ENST00000330334 ESCO1Q5FWF5 840 aa26.02■■□□□ 1.76
HDDC3-201ENST00000330334 NUTM2AQ8IVF1 878 aaPredicted RBP26.02■■□□□ 1.76
HDDC3-201ENST00000330334 PLEKHH1Q9ULM0 1364 aa26.02■■□□□ 1.76
HDDC3-201ENST00000330334 NPHP3Q7Z494 1330 aa26■■□□□ 1.75
HDDC3-201ENST00000330334 DCAF11Q8TEB1 546 aa25.97■■□□□ 1.75
HDDC3-201ENST00000330334 FOXO3O43524 673 aa25.94■■□□□ 1.74
HDDC3-201ENST00000330334 DLC1Q96QB1 1528 aa25.93■■□□□ 1.74
HDDC3-201ENST00000330334 PRAM1Q96QH2 718 aa25.93■■□□□ 1.74
HDDC3-201ENST00000330334 KDM2AQ9Y2K7 1162 aa25.93■■□□□ 1.74
HDDC3-201ENST00000330334 AFF2P51816 1311 aa25.91■■□□□ 1.74
HDDC3-201ENST00000330334 ADGRB1O14514 1584 aa25.91■■□□□ 1.74
HDDC3-201ENST00000330334 PXDNQ92626 1479 aa25.91■■□□□ 1.74
HDDC3-201ENST00000330334 NUTM2FA1L443 756 aa25.9■■□□□ 1.74
HDDC3-201ENST00000330334 RXRBP28702 533 aa25.89■■□□□ 1.74
HDDC3-201ENST00000330334 POGKQ9P215 609 aa25.89■■□□□ 1.74
HDDC3-201ENST00000330334 C8orf37Q96NL8 207 aa25.88■■□□□ 1.73
HDDC3-201ENST00000330334 FMN2Q9NZ56 1722 aa25.88■■□□□ 1.73
HDDC3-201ENST00000330334 COL22A1Q8NFW1 1626 aaPredicted RBP25.85■■□□□ 1.73
HDDC3-201ENST00000330334 ADAMTS2O95450 1211 aa25.85■■□□□ 1.73
HDDC3-201ENST00000330334 NGLY1Q96IV0 654 aa25.85■■□□□ 1.73
HDDC3-201ENST00000330334 TRAK1Q9UPV9 953 aa25.85■■□□□ 1.73
HDDC3-201ENST00000330334 SAFB2Q14151 953 aaKnown RBP eCLIP25.84■■□□□ 1.73
HDDC3-201ENST00000330334 XPCQ01831 940 aaPredicted RBP25.83■■□□□ 1.73
HDDC3-201ENST00000330334 QTRT2Q9H974 415 aaKnown RBP25.83■■□□□ 1.73
HDDC3-201ENST00000330334 PHF8Q9UPP1 1060 aa25.83■■□□□ 1.73
HDDC3-201ENST00000330334 CDK12Q9NYV4 1490 aaPredicted RBP25.83■■□□□ 1.73
HDDC3-201ENST00000330334 FNBP4Q8N3X1 1017 aaPredicted RBP25.82■■□□□ 1.72
HDDC3-201ENST00000330334 KIF1AQ12756 1690 aa25.82■■□□□ 1.72
HDDC3-201ENST00000330334 SPATA31A3Q5VYP0 1347 aa25.82■■□□□ 1.72
HDDC3-201ENST00000330334 KRT28Q7Z3Y7 464 aa25.81■■□□□ 1.72
HDDC3-201ENST00000330334 ANKARQ7Z5J8 1434 aa25.8■■□□□ 1.72
HDDC3-201ENST00000330334 PSME1Q06323 249 aa25.8■■□□□ 1.72
HDDC3-201ENST00000330334 ADGRB2O60241 1585 aa25.79■■□□□ 1.72
HDDC3-201ENST00000330334 RBM6P78332 1123 aaKnown RBP25.79■■□□□ 1.72
HDDC3-201ENST00000330334 EIF3AQ14152 1382 aaKnown RBP25.77■■□□□ 1.72
HDDC3-201ENST00000330334 USP21Q9UK80 565 aa25.76■■□□□ 1.71
HDDC3-201ENST00000330334 WASLO00401 505 aaPredicted RBP25.75■■□□□ 1.71
HDDC3-201ENST00000330334 SBNO1A3KN83 1393 aa25.74■■□□□ 1.71
HDDC3-201ENST00000330334 MINK1Q8N4C8 1332 aaPredicted RBP25.73■■□□□ 1.71
HDDC3-201ENST00000330334 HIRIP3Q9BW71 556 aaPredicted RBP25.73■■□□□ 1.71
HDDC3-201ENST00000330334 TRPC5Q9UL62 973 aaPredicted RBP25.73■■□□□ 1.71
HDDC3-201ENST00000330334 RGPD8O14715 1765 aaPredicted RBP25.71■■□□□ 1.71
HDDC3-201ENST00000330334 TNS3Q68CZ2 1445 aa25.71■■□□□ 1.71
HDDC3-201ENST00000330334 PMFBP1Q8TBY8 1022 aa25.69■■□□□ 1.7
HDDC3-201ENST00000330334 USP32Q8NFA0 1604 aa25.69■■□□□ 1.7
HDDC3-201ENST00000330334 KIAA1210Q9ULL0 1709 aa25.68■■□□□ 1.7
HDDC3-201ENST00000330334 PRR36Q9H6K5 1346 aa25.68■■□□□ 1.7
HDDC3-201ENST00000330334 UPF1Q92900 1129 aaKnown RBP eCLIP25.68■■□□□ 1.7
HDDC3-201ENST00000330334 ARHGEF10O15013 1369 aa25.68■■□□□ 1.7
HDDC3-201ENST00000330334 TULP4Q9NRJ4 1543 aa25.68■■□□□ 1.7
HDDC3-201ENST00000330334 BCL9LQ86UU0 1499 aa25.67■■□□□ 1.7
HDDC3-201ENST00000330334 ATRNO75882 1429 aa25.67■■□□□ 1.7
HDDC3-201ENST00000330334 RGS12O14924 1447 aa25.64■■□□□ 1.7
HDDC3-201ENST00000330334 NBPF1Q3BBV0 1214 aa25.64■■□□□ 1.7
HDDC3-201ENST00000330334 GPRASP1Q5JY77 1395 aa25.64■■□□□ 1.69
HDDC3-201ENST00000330334 ARHGEF28Q8N1W1 1705 aaKnown RBP25.63■■□□□ 1.69
HDDC3-201ENST00000330334 L3MBTL2Q969R5 705 aa25.63■■□□□ 1.69
HDDC3-201ENST00000330334 MARF1Q9Y4F3 1742 aaKnown RBP25.63■■□□□ 1.69
HDDC3-201ENST00000330334 UNC5CLQ8IV45 518 aa25.61■■□□□ 1.69
HDDC3-201ENST00000330334 NUDT16Q96DE0 195 aaKnown RBP25.61■■□□□ 1.69
HDDC3-201ENST00000330334 SLIT2O94813 1529 aa25.61■■□□□ 1.69
HDDC3-201ENST00000330334 CDK19Q9BWU1 502 aa25.6■■□□□ 1.69
HDDC3-201ENST00000330334 HAP1P54257 671 aaPredicted RBP25.59■■□□□ 1.69
HDDC3-201ENST00000330334 LMOD2Q6P5Q4 547 aa25.59■■□□□ 1.69
HDDC3-201ENST00000330334 NGDNQ8NEJ9 315 aaKnown RBP25.59■■□□□ 1.69
HDDC3-201ENST00000330334 CABLES1Q8TDN4 633 aa25.59■■□□□ 1.69
HDDC3-201ENST00000330334 GJD4Q96KN9 370 aaPredicted RBP25.59■■□□□ 1.69
HDDC3-201ENST00000330334 SIN3AQ96ST3 1273 aa25.58■■□□□ 1.69
HDDC3-201ENST00000330334 CCDC61Q9Y6R9 512 aa25.57■■□□□ 1.68
HDDC3-201ENST00000330334 ATP7BP35670 1465 aa25.57■■□□□ 1.68
HDDC3-201ENST00000330334 TRPM3Q9HCF6 1732 aaPredicted RBP25.54■■□□□ 1.68
HDDC3-201ENST00000330334 PLEKHG3A1L390 1219 aa25.54■■□□□ 1.68
HDDC3-201ENST00000330334 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.53■■□□□ 1.68
HDDC3-201ENST00000330334 CENPJQ9HC77 1338 aaPredicted RBP25.53■■□□□ 1.68
HDDC3-201ENST00000330334 POLR3AO14802 1390 aaPredicted RBP25.52■■□□□ 1.68
HDDC3-201ENST00000330334 FAM83GA6ND36 823 aa25.51■■□□□ 1.67
HDDC3-201ENST00000330334 NEUROD1Q13562 356 aa25.51■■□□□ 1.67
HDDC3-201ENST00000330334 ATAD2Q6PL18 1390 aa25.51■■□□□ 1.67
HDDC3-201ENST00000330334 ITSN1Q15811 1721 aa25.5■■□□□ 1.67
HDDC3-201ENST00000330334 VPS72Q15906 364 aa25.5■■□□□ 1.67
HDDC3-201ENST00000330334 ALS2Q96Q42 1657 aa25.5■■□□□ 1.67
HDDC3-201ENST00000330334 PAK3O75914 559 aaPredicted RBP25.49■■□□□ 1.67
HDDC3-201ENST00000330334 NBPF8Q3BBV2 869 aa25.49■■□□□ 1.67
HDDC3-201ENST00000330334 RALGAPBQ86X10 1494 aa25.47■■□□□ 1.67
HDDC3-201ENST00000330334 ACEP12821 1306 aa25.47■■□□□ 1.67
HDDC3-201ENST00000330334 ABCA3Q99758 1704 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms