RNA–Protein interactions for RNA: ENST00000316534.8

NPHP1-201, Transcript of nephrocystin 1, humanhuman

TSL 1 (best) BASIC

Gene NPHP1, Length 3,756 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1-201ENST00000316534 LRRC7Q96NW7 1537 aa9.87□□□□□ -0.83
NPHP1-201ENST00000316534 ATP7BP35670 1465 aa9.87□□□□□ -0.83
NPHP1-201ENST00000316534 ZBED9Q6R2W3 1325 aa9.87□□□□□ -0.83
NPHP1-201ENST00000316534 NWD1Q149M9 1564 aa9.86□□□□□ -0.83
NPHP1-201ENST00000316534 NSD2O96028 1365 aa9.86□□□□□ -0.83
NPHP1-201ENST00000316534 PTCH1Q13635 1447 aa9.85□□□□□ -0.83
NPHP1-201ENST00000316534 MARF1Q9Y4F3 1742 aaKnown RBP9.85□□□□□ -0.83
NPHP1-201ENST00000316534 ANKRD36BQ8N2N9 1353 aa9.85□□□□□ -0.83
NPHP1-201ENST00000316534 FMN2Q9NZ56 1722 aa9.84□□□□□ -0.83
NPHP1-201ENST00000316534 SMG6Q86US8 1419 aaKnown RBP9.84□□□□□ -0.83
NPHP1-201ENST00000316534 COL3A1P02461 1466 aaPredicted RBP9.84□□□□□ -0.83
NPHP1-201ENST00000316534 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.84□□□□□ -0.83
NPHP1-201ENST00000316534 PANK3Q9H999 370 aa9.84□□□□□ -0.83
NPHP1-201ENST00000316534 NLRP13Q86W25 1043 aa9.83□□□□□ -0.84
NPHP1-201ENST00000316534 CPSF1Q10570 1443 aaKnown RBP9.82□□□□□ -0.84
NPHP1-201ENST00000316534 IQSEC2Q5JU85 1478 aa9.82□□□□□ -0.84
NPHP1-201ENST00000316534 POLR3AO14802 1390 aaPredicted RBP9.82□□□□□ -0.84
NPHP1-201ENST00000316534 RNF123Q5XPI4 1314 aa9.82□□□□□ -0.84
NPHP1-201ENST00000316534 CARD14Q9BXL6 1004 aa9.81□□□□□ -0.84
NPHP1-201ENST00000316534 PTPRUQ92729 1446 aa9.81□□□□□ -0.84
NPHP1-201ENST00000316534 ATAD2Q6PL18 1390 aa9.81□□□□□ -0.84
NPHP1-201ENST00000316534 PIK3R4Q99570 1358 aa9.81□□□□□ -0.84
NPHP1-201ENST00000316534 METP08581 1390 aa9.8□□□□□ -0.84
NPHP1-201ENST00000316534 YTHDC1Q96MU7 727 aaKnown RBP9.8□□□□□ -0.84
NPHP1-201ENST00000316534 NCBP3Q53F19 620 aaKnown RBP9.79□□□□□ -0.84
NPHP1-201ENST00000316534 GTF3C3Q9Y5Q9 886 aa9.79□□□□□ -0.84
NPHP1-201ENST00000316534 RGPD1P0DJD0 1748 aa9.79□□□□□ -0.84
NPHP1-201ENST00000316534 EVC2Q86UK5 1308 aa9.79□□□□□ -0.84
NPHP1-201ENST00000316534 MRS2Q9HD23 443 aa9.78□□□□□ -0.84
NPHP1-201ENST00000316534 SETD1BQ9UPS6 1966 aaKnown RBP9.78□□□□□ -0.84
NPHP1-201ENST00000316534 PHRF1Q9P1Y6 1649 aaKnown RBP9.77□□□□□ -0.84
NPHP1-201ENST00000316534 NSD3Q9BZ95 1437 aa9.77□□□□□ -0.84
NPHP1-201ENST00000316534 PPP2R1AP30153 589 aa9.77□□□□□ -0.85
NPHP1-201ENST00000316534 TMEM132EQ6IEE7 984 aa9.77□□□□□ -0.85
NPHP1-201ENST00000316534 SSH2Q76I76 1423 aa9.76□□□□□ -0.85
NPHP1-201ENST00000316534 A0A1W2PP64 1363 aa9.76□□□□□ -0.85
NPHP1-201ENST00000316534 ZNF521Q96K83 1311 aa9.76□□□□□ -0.85
NPHP1-201ENST00000316534 RGPD8O14715 1765 aaPredicted RBP9.76□□□□□ -0.85
NPHP1-201ENST00000316534 PNPLA6Q8IY17 1366 aa9.75□□□□□ -0.85
NPHP1-201ENST00000316534 PLEKHH1Q9ULM0 1364 aa9.75□□□□□ -0.85
NPHP1-201ENST00000316534 TRAK1Q9UPV9 953 aa9.75□□□□□ -0.85
NPHP1-201ENST00000316534 HDGFP51858 240 aaKnown RBP9.74□□□□□ -0.85
NPHP1-201ENST00000316534 ERICH6BQ5W0A0 696 aa9.73□□□□□ -0.85
NPHP1-201ENST00000316534 ROBO2Q9HCK4 1378 aa9.73□□□□□ -0.85
NPHP1-201ENST00000316534 MAP2P11137 1827 aaKnown RBP9.73□□□□□ -0.85
NPHP1-201ENST00000316534 NKTRP30414 1462 aaKnown RBP9.73□□□□□ -0.85
NPHP1-201ENST00000316534 EDC4Q6P2E9 1401 aaKnown RBP9.73□□□□□ -0.85
NPHP1-201ENST00000316534 CHGAP10645 457 aaKnown RBP9.73□□□□□ -0.85
NPHP1-201ENST00000316534 ANKARQ7Z5J8 1434 aa9.73□□□□□ -0.85
NPHP1-201ENST00000316534 KNSTRNQ9Y448 316 aa9.73□□□□□ -0.85
NPHP1-201ENST00000316534 TBX22Q9Y458 520 aa9.73□□□□□ -0.85
NPHP1-201ENST00000316534 LTKP29376 864 aa9.72□□□□□ -0.85
NPHP1-201ENST00000316534 PIK3C2AO00443 1686 aa9.72□□□□□ -0.85
NPHP1-201ENST00000316534 CGNL1Q0VF96 1302 aa9.72□□□□□ -0.85
NPHP1-201ENST00000316534 PDE3BQ13370 1112 aa9.71□□□□□ -0.85
NPHP1-201ENST00000316534 PRAM1Q96QH2 718 aa9.71□□□□□ -0.85
NPHP1-201ENST00000316534 STRCP1A6NGW2 1772 aa9.71□□□□□ -0.86
NPHP1-201ENST00000316534 PEAK1Q9H792 1746 aa9.71□□□□□ -0.86
NPHP1-201ENST00000316534 SUPT16HQ9Y5B9 1047 aaKnown RBP9.71□□□□□ -0.86
NPHP1-201ENST00000316534 MST1RQ04912 1400 aa9.71□□□□□ -0.86
NPHP1-201ENST00000316534 AATKQ6ZMQ8 1374 aa9.71□□□□□ -0.86
NPHP1-201ENST00000316534 HNRNPUQ00839 825 aaKnown RBP eCLIP9.7□□□□□ -0.86
NPHP1-201ENST00000316534 TRPM3Q9HCF6 1732 aaPredicted RBP9.7□□□□□ -0.86
NPHP1-201ENST00000316534 TRMT2AQ8IZ69 625 aaKnown RBP9.7□□□□□ -0.86
NPHP1-201ENST00000316534 PHF23Q9BUL5 403 aaPredicted RBP9.7□□□□□ -0.86
NPHP1-201ENST00000316534 NGEFQ8N5V2 710 aa9.7□□□□□ -0.86
NPHP1-201ENST00000316534 TMC1Q8TDI8 760 aa9.7□□□□□ -0.86
NPHP1-201ENST00000316534 CDK12Q9NYV4 1490 aaPredicted RBP9.7□□□□□ -0.86
NPHP1-201ENST00000316534 XIRP1Q702N8 1843 aaKnown RBP9.69□□□□□ -0.86
NPHP1-201ENST00000316534 OVOS2A0A0J9YW53 1432 aa9.69□□□□□ -0.86
NPHP1-201ENST00000316534 OVOS2Q6IE36 1432 aa9.69□□□□□ -0.86
NPHP1-201ENST00000316534 CAMTA1Q9Y6Y1 1673 aa9.69□□□□□ -0.86
NPHP1-201ENST00000316534 SLC12A5Q9H2X9 1139 aa9.69□□□□□ -0.86
NPHP1-201ENST00000316534 KIF1AQ12756 1690 aa9.68□□□□□ -0.86
NPHP1-201ENST00000316534 CRYBG1Q9Y4K1 1723 aa9.68□□□□□ -0.86
NPHP1-201ENST00000316534 WASLO00401 505 aaPredicted RBP9.68□□□□□ -0.86
NPHP1-201ENST00000316534 PPIP5K1Q6PFW1 1433 aa9.68□□□□□ -0.86
NPHP1-201ENST00000316534 MLECQ14165 292 aa9.68□□□□□ -0.86
NPHP1-201ENST00000316534 NUDCQ9Y266 331 aa9.68□□□□□ -0.86
NPHP1-201ENST00000316534 NUTM2DQ5VT03 806 aaPredicted RBP9.67□□□□□ -0.86
NPHP1-201ENST00000316534 CDK19Q9BWU1 502 aa9.67□□□□□ -0.86
NPHP1-201ENST00000316534 CC2D1BQ5T0F9 858 aaKnown RBP9.67□□□□□ -0.86
NPHP1-201ENST00000316534 THEMISQ8N1K5 641 aaPredicted RBP9.67□□□□□ -0.86
NPHP1-201ENST00000316534 VIRMAQ69YN4 1812 aaKnown RBP9.67□□□□□ -0.86
NPHP1-201ENST00000316534 ESF1Q9H501 851 aaKnown RBP9.67□□□□□ -0.86
NPHP1-201ENST00000316534 USP31Q70CQ4 1352 aa9.66□□□□□ -0.86
NPHP1-201ENST00000316534 STRCQ7RTU9 1775 aa9.66□□□□□ -0.86
NPHP1-201ENST00000316534 FAM9BQ8IZU0 186 aa9.66□□□□□ -0.86
NPHP1-201ENST00000316534 PLEKHG3A1L390 1219 aa9.66□□□□□ -0.86
NPHP1-201ENST00000316534 CABP2Q9NPB3 220 aa9.65□□□□□ -0.86
NPHP1-201ENST00000316534 DLG5Q8TDM6 1919 aa9.65□□□□□ -0.86
NPHP1-201ENST00000316534 PRR36Q9H6K5 1346 aa9.65□□□□□ -0.86
NPHP1-201ENST00000316534 USP6P35125 1406 aa9.65□□□□□ -0.87
NPHP1-201ENST00000316534 ALS2Q96Q42 1657 aa9.65□□□□□ -0.87
NPHP1-201ENST00000316534 LRRC37A3O60309 1634 aa9.64□□□□□ -0.87
NPHP1-201ENST00000316534 NCOA3Q9Y6Q9 1424 aa9.64□□□□□ -0.87
NPHP1-201ENST00000316534 FYB1O15117 783 aa9.64□□□□□ -0.87
NPHP1-201ENST00000316534 CEBPAP49715 358 aaPredicted RBP9.64□□□□□ -0.87
NPHP1-201ENST00000316534 POLR3GLQ9BT43 218 aa9.64□□□□□ -0.87
NPHP1-201ENST00000316534 CCDC27Q2M243 656 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms