RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 C9orf78Q9NZ63 289 aaPredicted RBP20.97■□□□□ 0.95
SYNPO-201ENST00000307662 MIA2Q96PC5 1412 aa20.96■□□□□ 0.95
SYNPO-201ENST00000307662 CDCA7LQ96GN5 454 aa20.96■□□□□ 0.95
SYNPO-201ENST00000307662 NAT10Q9H0A0 1025 aaKnown RBP20.96■□□□□ 0.95
SYNPO-201ENST00000307662 FBXW7Q969H0 707 aa20.96■□□□□ 0.95
SYNPO-201ENST00000307662 RUFY1Q96T51 708 aa20.96■□□□□ 0.95
SYNPO-201ENST00000307662 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.96■□□□□ 0.95
SYNPO-201ENST00000307662 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
SYNPO-201ENST00000307662 GNAI1P63096 354 aa20.95■□□□□ 0.94
SYNPO-201ENST00000307662 ADAMTS8Q9UP79 889 aa20.95■□□□□ 0.94
SYNPO-201ENST00000307662 ANKRD50Q9ULJ7 1429 aa20.95■□□□□ 0.94
SYNPO-201ENST00000307662 PDZRN3Q9UPQ7 1066 aa20.94■□□□□ 0.94
SYNPO-201ENST00000307662 PRPF40AO75400 957 aaKnown RBP20.94■□□□□ 0.94
SYNPO-201ENST00000307662 CCDC47Q96A33 483 aaKnown RBP20.94■□□□□ 0.94
SYNPO-201ENST00000307662 NEXNQ0ZGT2 675 aa20.93■□□□□ 0.94
SYNPO-201ENST00000307662 GRPEL1Q9HAV7 217 aa20.93■□□□□ 0.94
SYNPO-201ENST00000307662 AKNAQ7Z591 1439 aa20.93■□□□□ 0.94
SYNPO-201ENST00000307662 ERC2O15083 957 aa20.92■□□□□ 0.94
SYNPO-201ENST00000307662 RABEP1Q15276 862 aa20.92■□□□□ 0.94
SYNPO-201ENST00000307662 HSP90AB4PQ58FF6 505 aa20.92■□□□□ 0.94
SYNPO-201ENST00000307662 TRIM5Q9C035 493 aa20.92■□□□□ 0.94
SYNPO-201ENST00000307662 NUTM2FA1L443 756 aa20.91■□□□□ 0.94
SYNPO-201ENST00000307662 RRP9O43818 475 aaKnown RBP20.91■□□□□ 0.94
SYNPO-201ENST00000307662 FKBP5Q13451 457 aaPredicted RBP20.91■□□□□ 0.94
SYNPO-201ENST00000307662 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.91■□□□□ 0.94
SYNPO-201ENST00000307662 BCL11BQ9C0K0 894 aaPredicted RBP20.91■□□□□ 0.94
SYNPO-201ENST00000307662 EIF2S2P20042 333 aaKnown RBP20.9■□□□□ 0.94
SYNPO-201ENST00000307662 CDR1P51861 262 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 TEFQ10587 303 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 MCM2P49736 904 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 VPS53Q5VIR6 699 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 MINK1Q8N4C8 1332 aaPredicted RBP20.9■□□□□ 0.94
SYNPO-201ENST00000307662 G3BP1Q13283 466 aaKnown RBP eCLIP20.9■□□□□ 0.94
SYNPO-201ENST00000307662 PDE3AQ14432 1141 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 C1orf141Q5JVX7 400 aa20.9■□□□□ 0.94
SYNPO-201ENST00000307662 SYNJ1O43426 1573 aa20.89■□□□□ 0.94
SYNPO-201ENST00000307662 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.93
SYNPO-201ENST00000307662 SMG6Q86US8 1419 aaKnown RBP20.89■□□□□ 0.93
SYNPO-201ENST00000307662 TRDNQ13061 729 aa20.89■□□□□ 0.93
SYNPO-201ENST00000307662 ERCC4Q92889 916 aaPredicted RBP20.87■□□□□ 0.93
SYNPO-201ENST00000307662 OLFM4Q6UX06 510 aa20.87■□□□□ 0.93
SYNPO-201ENST00000307662 CFTRP13569 1480 aa20.87■□□□□ 0.93
SYNPO-201ENST00000307662 TMX4Q9H1E5 349 aaPredicted RBP20.86■□□□□ 0.93
SYNPO-201ENST00000307662 FOSBP53539 338 aa20.86■□□□□ 0.93
SYNPO-201ENST00000307662 NECTIN2Q92692 538 aa20.86■□□□□ 0.93
SYNPO-201ENST00000307662 SDF4Q9BRK5 362 aa20.86■□□□□ 0.93
SYNPO-201ENST00000307662 NEK4P51957 841 aa20.86■□□□□ 0.93
SYNPO-201ENST00000307662 NINLQ9Y2I6 1382 aa20.85■□□□□ 0.93
SYNPO-201ENST00000307662 ESPNB1AK53 854 aa20.85■□□□□ 0.93
SYNPO-201ENST00000307662 CWC22Q9HCG8 908 aaKnown RBP20.85■□□□□ 0.93
SYNPO-201ENST00000307662 CCP110O43303 1012 aa20.85■□□□□ 0.93
SYNPO-201ENST00000307662 PSMA5P28066 241 aa20.85■□□□□ 0.93
SYNPO-201ENST00000307662 CCDC27Q2M243 656 aa20.85■□□□□ 0.93
SYNPO-201ENST00000307662 APPP05067 770 aa20.84■□□□□ 0.93
SYNPO-201ENST00000307662 PRXQ9BXM0 1461 aa20.84■□□□□ 0.93
SYNPO-201ENST00000307662 UQCRHLA0A096LP55 91 aa20.84■□□□□ 0.93
SYNPO-201ENST00000307662 UQCRHP07919 91 aa20.84■□□□□ 0.93
SYNPO-201ENST00000307662 PDILTQ8N807 584 aa20.84■□□□□ 0.93
SYNPO-201ENST00000307662 DDX58O95786 925 aaKnown RBP20.83■□□□□ 0.93
SYNPO-201ENST00000307662 NFXL1Q6ZNB6 911 aa20.83■□□□□ 0.93
SYNPO-201ENST00000307662 PRKCSHP14314 528 aaPredicted RBP20.83■□□□□ 0.92
SYNPO-201ENST00000307662 SAFBQ15424 915 aaKnown RBP eCLIP20.83■□□□□ 0.92
SYNPO-201ENST00000307662 GCC1Q96CN9 775 aa20.83■□□□□ 0.92
SYNPO-201ENST00000307662 CALRP27797 417 aaKnown RBP20.82■□□□□ 0.92
SYNPO-201ENST00000307662 GRIN2BQ13224 1484 aa20.82■□□□□ 0.92
SYNPO-201ENST00000307662 MCM4P33991 863 aa20.82■□□□□ 0.92
SYNPO-201ENST00000307662 H0YHG0 523 aa20.82■□□□□ 0.92
SYNPO-201ENST00000307662 K7ELQ4 463 aaPredicted RBP20.82■□□□□ 0.92
SYNPO-201ENST00000307662 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 CNTROBQ8N137 903 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 TCP11L2Q8N4U5 519 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 PPP2R1AP30153 589 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 TSPYL4Q9UJ04 414 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 EFCAB5A4FU69 1503 aa20.81■□□□□ 0.92
SYNPO-201ENST00000307662 KINO60870 393 aaKnown RBP20.8■□□□□ 0.92
SYNPO-201ENST00000307662 PDCP20941 246 aa20.8■□□□□ 0.92
SYNPO-201ENST00000307662 SMC2O95347 1197 aa20.8■□□□□ 0.92
SYNPO-201ENST00000307662 NAP1L1P55209 391 aaKnown RBP20.8■□□□□ 0.92
SYNPO-201ENST00000307662 SPC24Q8NBT2 197 aa20.8■□□□□ 0.92
SYNPO-201ENST00000307662 LEKR1Q6ZMV7 388 aa20.8■□□□□ 0.92
SYNPO-201ENST00000307662 MSH5O43196 834 aa20.79■□□□□ 0.92
SYNPO-201ENST00000307662 CIZ1Q9ULV3 898 aaPredicted RBP20.79■□□□□ 0.92
SYNPO-201ENST00000307662 GTF2E1P29083 439 aaPredicted RBP20.79■□□□□ 0.92
SYNPO-201ENST00000307662 PRM3Q9NNZ6 103 aa20.79■□□□□ 0.92
SYNPO-201ENST00000307662 FIBPO43427 364 aa20.79■□□□□ 0.92
SYNPO-201ENST00000307662 RRP12Q5JTH9 1297 aaKnown RBP20.78■□□□□ 0.92
SYNPO-201ENST00000307662 CAGE1Q8TC20 777 aa20.78■□□□□ 0.92
SYNPO-201ENST00000307662 ERICH2A1L162 156 aa20.78■□□□□ 0.92
SYNPO-201ENST00000307662 UBTFL1P0CB47 393 aaPredicted RBP20.78■□□□□ 0.92
SYNPO-201ENST00000307662 TTC5Q8N0Z6 440 aa20.78■□□□□ 0.92
SYNPO-201ENST00000307662 CCDC112Q8NEF3 446 aa20.78■□□□□ 0.92
SYNPO-201ENST00000307662 OSCARQ8IYS5 282 aa20.77■□□□□ 0.92
SYNPO-201ENST00000307662 HMOX1P09601 288 aa20.77■□□□□ 0.92
SYNPO-201ENST00000307662 CCDC192P0DO97 292 aa20.77■□□□□ 0.92
SYNPO-201ENST00000307662 BCAR3O75815 825 aa20.77■□□□□ 0.92
SYNPO-201ENST00000307662 PNISRQ8TF01 805 aaKnown RBP20.77■□□□□ 0.92
SYNPO-201ENST00000307662 RALYLQ86SE5 291 aaKnown RBP20.77■□□□□ 0.92
SYNPO-201ENST00000307662 RDXP35241 583 aaKnown RBP20.77■□□□□ 0.91
SYNPO-201ENST00000307662 G3V3G9 751 aa20.76■□□□□ 0.91
SYNPO-201ENST00000307662 DCAF8Q5TAQ9 597 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms