RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 KIF3AQ9Y496 699 aa15.27■□□□□ 0.03
USP38-201ENST00000307017 ANKRD62A6NC57 917 aa15.27■□□□□ 0.03
USP38-201ENST00000307017 PRKRIP1Q9H875 184 aaPredicted RBP15.27■□□□□ 0.03
USP38-201ENST00000307017 ZKSCAN1P17029 563 aaPredicted RBP15.26■□□□□ 0.03
USP38-201ENST00000307017 COG3Q96JB2 828 aa15.26■□□□□ 0.03
USP38-201ENST00000307017 TSPYL1Q9H0U9 437 aa15.26■□□□□ 0.03
USP38-201ENST00000307017 ATP6V1DQ9Y5K8 247 aa15.26■□□□□ 0.03
USP38-201ENST00000307017 TTC5Q8N0Z6 440 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 CCDC43Q96MW1 224 aaKnown RBP15.25■□□□□ 0.03
USP38-201ENST00000307017 EIF3AQ14152 1382 aaKnown RBP15.25■□□□□ 0.03
USP38-201ENST00000307017 IKQ13123 557 aaPredicted RBP15.25■□□□□ 0.03
USP38-201ENST00000307017 E9PSI1 815 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 AEBP1Q8IUX7 1158 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 SIL1Q9H173 461 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 TSPYL4Q9UJ04 414 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 FHOD3Q2V2M9 1422 aa15.25■□□□□ 0.03
USP38-201ENST00000307017 ERICH2A1L162 156 aa15.24■□□□□ 0.03
USP38-201ENST00000307017 G3BP1Q13283 466 aaKnown RBP eCLIP15.24■□□□□ 0.03
USP38-201ENST00000307017 NOL10Q9BSC4 688 aaKnown RBP15.24■□□□□ 0.03
USP38-201ENST00000307017 UQCRHLA0A096LP55 91 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 UQCRHP07919 91 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 SDF4Q9BRK5 362 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 CCDC88BA6NC98 1476 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 TRDNQ13061 729 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 GGNBP2Q9H3C7 697 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 PODXL2Q9NZ53 605 aa15.23■□□□□ 0.03
USP38-201ENST00000307017 CWC22Q9HCG8 908 aaKnown RBP15.23■□□□□ 0.03
USP38-201ENST00000307017 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 ATP2B2Q01814 1243 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 CCDC73Q6ZRK6 1079 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 CABP2Q9NPB3 220 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 AKNAQ7Z591 1439 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 INTS3Q68E01 1043 aaKnown RBP15.22■□□□□ 0.03
USP38-201ENST00000307017 ANKRD20A12PQ8NF67 263 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 RIC3Q7Z5B4 369 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 HSP90B2PQ58FF3 399 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 OLFM4Q6UX06 510 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 ZHX3Q9H4I2 956 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 REC8O95072 547 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 CCDC39Q9UFE4 941 aa15.22■□□□□ 0.03
USP38-201ENST00000307017 PPM1FP49593 454 aaPredicted RBP15.21■□□□□ 0.03
USP38-201ENST00000307017 BCAR3O75815 825 aa15.21■□□□□ 0.03
USP38-201ENST00000307017 LMOD3Q0VAK6 560 aa15.21■□□□□ 0.03
USP38-201ENST00000307017 TMEM132AQ24JP5 1023 aa15.21■□□□□ 0.03
USP38-201ENST00000307017 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
USP38-201ENST00000307017 TSPY26PQ9H489 355 aa15.21■□□□□ 0.03
USP38-201ENST00000307017 CBX1P83916 185 aa15.21■□□□□ 0.02
USP38-201ENST00000307017 DDX54Q8TDD1 881 aaKnown RBP15.21■□□□□ 0.02
USP38-201ENST00000307017 TSR2Q969E8 191 aaKnown RBP15.21■□□□□ 0.02
USP38-201ENST00000307017 LARP6Q9BRS8 491 aaKnown RBP15.2■□□□□ 0.02
USP38-201ENST00000307017 CAMK4Q16566 473 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 USP47Q96K76 1375 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 NOM1Q5C9Z4 860 aaKnown RBP15.2■□□□□ 0.02
USP38-201ENST00000307017 ZBED9Q6R2W3 1325 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 NEXNQ0ZGT2 675 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 NEK4P51957 841 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 RUFY2Q8WXA3 655 aa15.2■□□□□ 0.02
USP38-201ENST00000307017 OFD1O75665 1012 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 RDXP35241 583 aaKnown RBP15.19■□□□□ 0.02
USP38-201ENST00000307017 TAF3Q5VWG9 929 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 TAX1BP1Q86VP1 789 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 AMOTL1Q8IY63 956 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 ARGLU1Q9NWB6 273 aaPredicted RBP15.19■□□□□ 0.02
USP38-201ENST00000307017 NEFHP12036 1026 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 DDX19BQ9UMR2 479 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 DCAF8L1A6NGE4 600 aa15.19■□□□□ 0.02
USP38-201ENST00000307017 PPP1R1BQ9UD71 204 aaPredicted RBP15.18■□□□□ 0.02
USP38-201ENST00000307017 TMEM132EQ6IEE7 984 aa15.18■□□□□ 0.02
USP38-201ENST00000307017 FSD1Q9BTV5 496 aa15.18■□□□□ 0.02
USP38-201ENST00000307017 DIAPH1O60610 1272 aaKnown RBP15.18■□□□□ 0.02
USP38-201ENST00000307017 VPS8Q8N3P4 1428 aa15.17■□□□□ 0.02
USP38-201ENST00000307017 CCDC47Q96A33 483 aaKnown RBP15.17■□□□□ 0.02
USP38-201ENST00000307017 ENOX2Q16206 610 aaKnown RBP15.17■□□□□ 0.02
USP38-201ENST00000307017 SEPT11Q9NVA2 429 aaKnown RBP15.17■□□□□ 0.02
USP38-201ENST00000307017 PDZRN3Q9UPQ7 1066 aa15.17■□□□□ 0.02
USP38-201ENST00000307017 EID1Q9Y6B2 187 aa15.17■□□□□ 0.02
USP38-201ENST00000307017 PDE3BQ13370 1112 aa15.16■□□□□ 0.02
USP38-201ENST00000307017 TDRD9Q8NDG6 1382 aaKnown RBP15.16■□□□□ 0.02
USP38-201ENST00000307017 HOOK1Q9UJC3 728 aaKnown RBP15.16■□□□□ 0.02
USP38-201ENST00000307017 ADAMTS8Q9UP79 889 aa15.16■□□□□ 0.02
USP38-201ENST00000307017 CCDC85AQ96PX6 553 aaPredicted RBP15.16■□□□□ 0.02
USP38-201ENST00000307017 ANKRD30AQ9BXX3 1397 aa15.16■□□□□ 0.02
USP38-201ENST00000307017 DNA2P51530 1060 aa15.15■□□□□ 0.02
USP38-201ENST00000307017 CPLX2Q6PUV4 134 aaKnown RBP15.15■□□□□ 0.02
USP38-201ENST00000307017 RALYLQ86SE5 291 aaKnown RBP15.15■□□□□ 0.02
USP38-201ENST00000307017 SERPINC1P01008 464 aa15.15■□□□□ 0.02
USP38-201ENST00000307017 NOB1Q9ULX3 412 aaKnown RBP15.15■□□□□ 0.02
USP38-201ENST00000307017 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
USP38-201ENST00000307017 PRKCSHP14314 528 aaPredicted RBP15.15■□□□□ 0.02
USP38-201ENST00000307017 PPFIA3O75145 1194 aa15.15■□□□□ 0.02
USP38-201ENST00000307017 PSME1Q06323 249 aa15.15■□□□□ 0.02
USP38-201ENST00000307017 ZNF526Q8TF50 670 aaPredicted RBP15.14■□□□□ 0.01
USP38-201ENST00000307017 DHX57Q6P158 1386 aaKnown RBP15.14■□□□□ 0.01
USP38-201ENST00000307017 TANGO6Q9C0B7 1094 aa15.14■□□□□ 0.01
USP38-201ENST00000307017 FMN1Q68DA7 1419 aa15.14■□□□□ 0.01
USP38-201ENST00000307017 CT47B1P0C2W7 299 aaPredicted RBP15.13■□□□□ 0.01
USP38-201ENST00000307017 RNF20Q5VTR2 975 aa15.13■□□□□ 0.01
USP38-201ENST00000307017 PAF1Q8N7H5 531 aa15.13■□□□□ 0.01
USP38-201ENST00000307017 LEKR1Q6ZMV7 388 aa15.13■□□□□ 0.01
USP38-201ENST00000307017 MRE11P49959 708 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms