RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 C19orf44Q9H6X5 657 aa31.74■■■□□ 2.67
HOXD4-201ENST00000306324 UBAP1LF5GYI3 381 aa31.72■■■□□ 2.67
HOXD4-201ENST00000306324 ATF3P18847 181 aa31.69■■■□□ 2.66
HOXD4-201ENST00000306324 TOM1O60784 492 aa31.68■■■□□ 2.66
HOXD4-201ENST00000306324 QRICH2Q9H0J4 1663 aa31.68■■■□□ 2.66
HOXD4-201ENST00000306324 EIF3AQ14152 1382 aaKnown RBP31.66■■■□□ 2.66
HOXD4-201ENST00000306324 DCCP43146 1447 aa31.66■■■□□ 2.66
HOXD4-201ENST00000306324 CADPS2Q86UW7 1296 aa31.65■■■□□ 2.66
HOXD4-201ENST00000306324 MINK1Q8N4C8 1332 aaPredicted RBP31.65■■■□□ 2.66
HOXD4-201ENST00000306324 CENPJQ9HC77 1338 aaPredicted RBP31.65■■■□□ 2.66
HOXD4-201ENST00000306324 CDC42BPGQ6DT37 1551 aa31.64■■■□□ 2.66
HOXD4-201ENST00000306324 HIRIP3Q9BW71 556 aaPredicted RBP31.63■■■□□ 2.65
HOXD4-201ENST00000306324 PIP4K2BP78356 416 aa31.6■■■□□ 2.65
HOXD4-201ENST00000306324 ADGRB2O60241 1585 aa31.6■■■□□ 2.65
HOXD4-201ENST00000306324 SCAF1Q9H7N4 1312 aaKnown RBP31.6■■■□□ 2.65
HOXD4-201ENST00000306324 FMN2Q9NZ56 1722 aa31.58■■■□□ 2.65
HOXD4-201ENST00000306324 SLAIN2Q9P270 581 aa31.58■■■□□ 2.65
HOXD4-201ENST00000306324 FBXO41Q8TF61 875 aa31.56■■■□□ 2.64
HOXD4-201ENST00000306324 USP47Q96K76 1375 aa31.56■■■□□ 2.64
HOXD4-201ENST00000306324 MST1RQ04912 1400 aa31.55■■■□□ 2.64
HOXD4-201ENST00000306324 RGPD8O14715 1765 aaPredicted RBP31.54■■■□□ 2.64
HOXD4-201ENST00000306324 NUTM2FA1L443 756 aa31.53■■■□□ 2.64
HOXD4-201ENST00000306324 ROBO1Q9Y6N7 1651 aa31.52■■■□□ 2.64
HOXD4-201ENST00000306324 ST20-MTHFSA0A0A6YYL1 179 aa31.5■■■□□ 2.63
HOXD4-201ENST00000306324 WASLO00401 505 aaPredicted RBP31.5■■■□□ 2.63
HOXD4-201ENST00000306324 C1orf167Q5SNV9 1468 aa31.49■■■□□ 2.63
HOXD4-201ENST00000306324 CDK19Q9BWU1 502 aa31.46■■■□□ 2.63
HOXD4-201ENST00000306324 USP32Q8NFA0 1604 aa31.45■■■□□ 2.63
HOXD4-201ENST00000306324 TULP4Q9NRJ4 1543 aa31.44■■■□□ 2.62
HOXD4-201ENST00000306324 SBNO2Q9Y2G9 1366 aa31.44■■■□□ 2.62
HOXD4-201ENST00000306324 EVC2Q86UK5 1308 aa31.42■■■□□ 2.62
HOXD4-201ENST00000306324 EIF4G2P78344 907 aaKnown RBP eCLIP31.42■■■□□ 2.62
HOXD4-201ENST00000306324 SRPK2P78362 688 aaKnown RBP31.41■■■□□ 2.62
HOXD4-201ENST00000306324 ESCO1Q5FWF5 840 aa31.41■■■□□ 2.62
HOXD4-201ENST00000306324 BRINP3Q76B58 766 aa31.41■■■□□ 2.62
HOXD4-201ENST00000306324 ORAI2Q96SN7 254 aa31.41■■■□□ 2.62
HOXD4-201ENST00000306324 ANKARQ7Z5J8 1434 aa31.4■■■□□ 2.62
HOXD4-201ENST00000306324 ITSN1Q15811 1721 aa31.4■■■□□ 2.62
HOXD4-201ENST00000306324 ZEB1P37275 1124 aaPredicted RBP31.39■■■□□ 2.62
HOXD4-201ENST00000306324 TESK2Q96S53 571 aa31.39■■■□□ 2.62
HOXD4-201ENST00000306324 CABP2Q9NPB3 220 aa31.38■■■□□ 2.61
HOXD4-201ENST00000306324 PRR36Q9H6K5 1346 aa31.38■■■□□ 2.61
HOXD4-201ENST00000306324 HSPA5P11021 654 aaKnown RBP31.37■■■□□ 2.61
HOXD4-201ENST00000306324 NUDT16Q96DE0 195 aaKnown RBP31.36■■■□□ 2.61
HOXD4-201ENST00000306324 ATP7BP35670 1465 aa31.36■■■□□ 2.61
HOXD4-201ENST00000306324 KIF1AQ12756 1690 aa31.35■■■□□ 2.61
HOXD4-201ENST00000306324 PHLPP1O60346 1717 aa31.33■■■□□ 2.61
HOXD4-201ENST00000306324 NHSL1Q5SYE7 1610 aa31.33■■■□□ 2.61
HOXD4-201ENST00000306324 TOPAZ1Q8N9V7 1692 aa31.33■■■□□ 2.61
HOXD4-201ENST00000306324 ILDR1Q86SU0 546 aaPredicted RBP31.33■■■□□ 2.61
HOXD4-201ENST00000306324 SLC24A1O60721 1099 aa31.32■■■□□ 2.6
HOXD4-201ENST00000306324 PHF8Q9UPP1 1060 aa31.31■■■□□ 2.6
HOXD4-201ENST00000306324 TMF1P82094 1093 aa31.29■■■□□ 2.6
HOXD4-201ENST00000306324 PMFBP1Q8TBY8 1022 aa31.29■■■□□ 2.6
HOXD4-201ENST00000306324 DDX17Q92841 729 aaKnown RBP31.29■■■□□ 2.6
HOXD4-201ENST00000306324 AHDC1Q5TGY3 1603 aaPredicted RBP31.29■■■□□ 2.6
HOXD4-201ENST00000306324 HSPA1LP34931 641 aa31.28■■■□□ 2.6
HOXD4-201ENST00000306324 CCDC61Q9Y6R9 512 aa31.28■■■□□ 2.6
HOXD4-201ENST00000306324 DISP3Q9P2K9 1392 aa31.28■■■□□ 2.6
HOXD4-201ENST00000306324 FOXO3O43524 673 aa31.27■■■□□ 2.6
HOXD4-201ENST00000306324 PPIP5K1Q6PFW1 1433 aa31.25■■■□□ 2.59
HOXD4-201ENST00000306324 ATAD2Q6PL18 1390 aa31.24■■■□□ 2.59
HOXD4-201ENST00000306324 NPHP3Q7Z494 1330 aa31.23■■■□□ 2.59
HOXD4-201ENST00000306324 COL16A1Q07092 1604 aaPredicted RBP31.22■■■□□ 2.59
HOXD4-201ENST00000306324 XPCQ01831 940 aaPredicted RBP31.21■■■□□ 2.59
HOXD4-201ENST00000306324 NGDNQ8NEJ9 315 aaKnown RBP31.21■■■□□ 2.59
HOXD4-201ENST00000306324 CABP1Q9NZU7 370 aa31.2■■■□□ 2.58
HOXD4-201ENST00000306324 CDCA8Q53HL2 280 aa31.18■■■□□ 2.58
HOXD4-201ENST00000306324 PUS7Q96PZ0 661 aaKnown RBP31.18■■■□□ 2.58
HOXD4-201ENST00000306324 PLEKHG3A1L390 1219 aa31.17■■■□□ 2.58
HOXD4-201ENST00000306324 PSME1Q06323 249 aa31.17■■■□□ 2.58
HOXD4-201ENST00000306324 ACEP12821 1306 aa31.17■■■□□ 2.58
HOXD4-201ENST00000306324 TMC1Q8TDI8 760 aa31.16■■■□□ 2.58
HOXD4-201ENST00000306324 PXDNQ92626 1479 aa31.16■■■□□ 2.58
HOXD4-201ENST00000306324 SOS2Q07890 1332 aaPredicted RBP31.15■■■□□ 2.58
HOXD4-201ENST00000306324 KRT28Q7Z3Y7 464 aa31.14■■■□□ 2.58
HOXD4-201ENST00000306324 POLR3GLQ9BT43 218 aa31.14■■■□□ 2.57
HOXD4-201ENST00000306324 POLR3AO14802 1390 aaPredicted RBP31.13■■■□□ 2.57
HOXD4-201ENST00000306324 AKAP12Q02952 1782 aa31.12■■■□□ 2.57
HOXD4-201ENST00000306324 LRRC59Q96AG4 307 aaKnown RBP31.1■■■□□ 2.57
HOXD4-201ENST00000306324 SLC12A5Q9H2X9 1139 aa31.1■■■□□ 2.57
HOXD4-201ENST00000306324 TRPM3Q9HCF6 1732 aaPredicted RBP31.09■■■□□ 2.57
HOXD4-201ENST00000306324 MYOM1P52179 1685 aa31.08■■■□□ 2.57
HOXD4-201ENST00000306324 C11orf95C9JLR9 678 aaPredicted RBP31.08■■■□□ 2.57
HOXD4-201ENST00000306324 NINLQ9Y2I6 1382 aa31.06■■■□□ 2.56
HOXD4-201ENST00000306324 SHPRHQ149N8 1683 aa31.05■■■□□ 2.56
HOXD4-201ENST00000306324 MON2Q7Z3U7 1717 aa31.04■■■□□ 2.56
HOXD4-201ENST00000306324 PAK3O75914 559 aaPredicted RBP31.04■■■□□ 2.56
HOXD4-201ENST00000306324 JCADQ9P266 1359 aa31.04■■■□□ 2.56
HOXD4-201ENST00000306324 SBNO1A3KN83 1393 aa31.03■■■□□ 2.56
HOXD4-201ENST00000306324 CD163L1Q9NR16 1453 aa31.02■■■□□ 2.56
HOXD4-201ENST00000306324 CPSF1Q10570 1443 aaKnown RBP31.02■■■□□ 2.56
HOXD4-201ENST00000306324 SPATA31A3Q5VYP0 1347 aa31.02■■■□□ 2.56
HOXD4-201ENST00000306324 LMOD2Q6P5Q4 547 aa31.01■■■□□ 2.56
HOXD4-201ENST00000306324 HDGFL2Q7Z4V5 671 aaPredicted RBP31.01■■■□□ 2.56
HOXD4-201ENST00000306324 ZNF692Q9BU19 519 aaPredicted RBP31.01■■■□□ 2.56
HOXD4-201ENST00000306324 TERF2IPQ9NYB0 399 aa31.01■■■□□ 2.56
HOXD4-201ENST00000306324 USP6P35125 1406 aa31.01■■■□□ 2.56
HOXD4-201ENST00000306324 TNS3Q68CZ2 1445 aa31.01■■■□□ 2.56
HOXD4-201ENST00000306324 KTN1Q86UP2 1357 aaKnown RBP31.01■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms