RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 ZNF830Q96NB3 372 aaPredicted RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 TESK2Q96S53 571 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 CHAMP1Q96JM3 812 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 ZNF692Q9BU19 519 aaPredicted RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 CCDC94Q9BW85 323 aaPredicted RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 NOL7Q9UMY1 257 aaKnown RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 CUL7Q14999 1698 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 MBD5Q9P267 1494 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 PPP4R3BQ5MIZ7 849 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 ZNF771Q7L3S4 317 aaPredicted RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 DZIP1LQ8IYY4 767 aaKnown RBP12.61□□□□□ -0.39
CLDN1-201ENST00000295522 GAS2L2Q8NHY3 880 aa12.61□□□□□ -0.39
CLDN1-201ENST00000295522 CTTNBP2Q8WZ74 1663 aa12.6□□□□□ -0.39
CLDN1-201ENST00000295522 K7ELQ4 463 aaPredicted RBP12.6□□□□□ -0.39
CLDN1-201ENST00000295522 CGNQ9P2M7 1197 aaKnown RBP12.6□□□□□ -0.39
CLDN1-201ENST00000295522 ZKSCAN5Q9Y2L8 839 aa12.6□□□□□ -0.39
CLDN1-201ENST00000295522 ERBINQ96RT1 1412 aa12.6□□□□□ -0.39
CLDN1-201ENST00000295522 KLHL40Q2TBA0 621 aa12.6□□□□□ -0.39
CLDN1-201ENST00000295522 ZKSCAN2Q63HK3 967 aa12.6□□□□□ -0.39
CLDN1-201ENST00000295522 CIZ1Q9ULV3 898 aaPredicted RBP12.6□□□□□ -0.39
CLDN1-201ENST00000295522 PBRM1Q86U86 1689 aa12.59□□□□□ -0.39
CLDN1-201ENST00000295522 ANKRD45Q5TZF3 282 aa12.59□□□□□ -0.39
CLDN1-201ENST00000295522 CAMSAP2Q08AD1 1489 aa12.59□□□□□ -0.39
CLDN1-201ENST00000295522 KIAA2012Q0VF49 1180 aa12.59□□□□□ -0.39
CLDN1-201ENST00000295522 DMTNQ08495 405 aa12.58□□□□□ -0.39
CLDN1-201ENST00000295522 MVPQ14764 893 aaKnown RBP12.58□□□□□ -0.39
CLDN1-201ENST00000295522 C17orf53Q8N3J3 647 aaPredicted RBP12.58□□□□□ -0.39
CLDN1-201ENST00000295522 TSR2Q969E8 191 aaKnown RBP12.58□□□□□ -0.39
CLDN1-201ENST00000295522 CCDC39Q9UFE4 941 aa12.58□□□□□ -0.39
CLDN1-201ENST00000295522 CCDC144AA2RUR9 1427 aa12.58□□□□□ -0.4
CLDN1-201ENST00000295522 SMC5Q8IY18 1101 aa12.58□□□□□ -0.4
CLDN1-201ENST00000295522 NOL8Q76FK4 1167 aaKnown RBP12.58□□□□□ -0.4
CLDN1-201ENST00000295522 TCP11L2Q8N4U5 519 aa12.58□□□□□ -0.4
CLDN1-201ENST00000295522 KIAA0586Q9BVV6 1533 aa12.58□□□□□ -0.4
CLDN1-201ENST00000295522 NAP1L2Q9ULW6 460 aaPredicted RBP12.57□□□□□ -0.4
CLDN1-201ENST00000295522 APBB1O00213 710 aa12.56□□□□□ -0.4
CLDN1-201ENST00000295522 TERF1P54274 439 aa12.56□□□□□ -0.4
CLDN1-201ENST00000295522 TRMT2AQ8IZ69 625 aaKnown RBP12.56□□□□□ -0.4
CLDN1-201ENST00000295522 PKP1Q13835 747 aa12.56□□□□□ -0.4
CLDN1-201ENST00000295522 UHRF1BP1Q6BDS2 1440 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 LRRIQ1Q96JM4 1722 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 ZBTB22O15209 634 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 ZSCAN20P17040 1043 aaPredicted RBP12.55□□□□□ -0.4
CLDN1-201ENST00000295522 JPH4Q96JJ6 628 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 C1orf115Q9H7X2 142 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 ZNF500O60304 480 aaPredicted RBP12.55□□□□□ -0.4
CLDN1-201ENST00000295522 CDCA8Q53HL2 280 aa12.55□□□□□ -0.4
CLDN1-201ENST00000295522 MORC1Q86VD1 984 aa12.54□□□□□ -0.4
CLDN1-201ENST00000295522 U2AF1L5P0DN76 240 aaPredicted RBP12.54□□□□□ -0.4
CLDN1-201ENST00000295522 U2AF1Q01081 240 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLDN1-201ENST00000295522 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.53□□□□□ -0.4
CLDN1-201ENST00000295522 GTF2E1P29083 439 aaPredicted RBP12.53□□□□□ -0.4
CLDN1-201ENST00000295522 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
CLDN1-201ENST00000295522 SNX21Q969T3 373 aa12.53□□□□□ -0.4
CLDN1-201ENST00000295522 TTC12Q9H892 705 aaPredicted RBP12.52□□□□□ -0.4
CLDN1-201ENST00000295522 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.52□□□□□ -0.4
CLDN1-201ENST00000295522 NINLQ9Y2I6 1382 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 ADAMTS12P58397 1594 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 PDCL2Q8N4E4 241 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 KIF3AQ9Y496 699 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 KIF16BQ96L93 1317 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 CHAF1AQ13111 956 aaPredicted RBP12.52□□□□□ -0.41
CLDN1-201ENST00000295522 ATP2B3Q16720 1220 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 DDX19BQ9UMR2 479 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 PLB1Q6P1J6 1458 aa12.52□□□□□ -0.41
CLDN1-201ENST00000295522 IQGAP2Q13576 1575 aa12.51□□□□□ -0.41
CLDN1-201ENST00000295522 STAC3Q96MF2 364 aa12.51□□□□□ -0.41
CLDN1-201ENST00000295522 GRIN2AQ12879 1464 aa12.51□□□□□ -0.41
CLDN1-201ENST00000295522 NUCB2P80303 420 aa12.51□□□□□ -0.41
CLDN1-201ENST00000295522 SAMD9Q5K651 1589 aa12.51□□□□□ -0.41
CLDN1-201ENST00000295522 COL17A1Q9UMD9 1497 aaPredicted RBP12.51□□□□□ -0.41
CLDN1-201ENST00000295522 CHGAP10645 457 aaKnown RBP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 TRIM27P14373 513 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 U2AF2P26368 475 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 RBM25P49756 843 aaKnown RBP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 EXOSC9Q06265 439 aaKnown RBP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 HS1BP3Q53T59 392 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 ARHGEF11O15085 1522 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 TBC1D9Q6ZT07 1266 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 TMEM57Q8N5G2 664 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 NOB1Q9ULX3 412 aaKnown RBP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 PDIA4P13667 645 aaKnown RBP12.5□□□□□ -0.41
CLDN1-201ENST00000295522 ZNF445P59923 1031 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 CHD1LQ86WJ1 897 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 RUNDC1Q96C34 613 aa12.5□□□□□ -0.41
CLDN1-201ENST00000295522 PRAG1Q86YV5 1406 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 UTP14CQ5TAP6 766 aaKnown RBP12.49□□□□□ -0.41
CLDN1-201ENST00000295522 ZGPATQ8N5A5 531 aaKnown RBP12.49□□□□□ -0.41
CLDN1-201ENST00000295522 USP25Q9UHP3 1055 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 SYNJ2O15056 1496 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 LMBRD1Q9NUN5 540 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 MYRIPQ8NFW9 859 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 CHMP4AQ9BY43 222 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 GDPD2Q9HCC8 539 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 TMEM63CQ9P1W3 806 aa12.49□□□□□ -0.41
CLDN1-201ENST00000295522 INSRP06213 1382 aa12.48□□□□□ -0.41
CLDN1-201ENST00000295522 DDIT3P35638 169 aa12.48□□□□□ -0.41
CLDN1-201ENST00000295522 TRERF1Q96PN7 1200 aa12.48□□□□□ -0.41
CLDN1-201ENST00000295522 MAGI2Q86UL8 1455 aa12.48□□□□□ -0.41
CLDN1-201ENST00000295522 GTPBP4Q9BZE4 634 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms