RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 U2SURPO15042 1029 aaKnown RBP11.76□□□□□ -0.53
MSH4-201ENST00000263187 USP35Q9P2H5 1018 aa11.76□□□□□ -0.53
MSH4-201ENST00000263187 CLTCL1P53675 1640 aa11.76□□□□□ -0.53
MSH4-201ENST00000263187 NSD3Q9BZ95 1437 aa11.76□□□□□ -0.53
MSH4-201ENST00000263187 PCDHB15Q9Y5E8 787 aa11.75□□□□□ -0.53
MSH4-201ENST00000263187 TRHP20396 242 aaPredicted RBP11.75□□□□□ -0.53
MSH4-201ENST00000263187 PLXNC1O60486 1568 aa11.75□□□□□ -0.53
MSH4-201ENST00000263187 HECW2Q9P2P5 1572 aa11.75□□□□□ -0.53
MSH4-201ENST00000263187 ZNF518AQ6AHZ1 1483 aa11.74□□□□□ -0.53
MSH4-201ENST00000263187 ZFYVE16Q7Z3T8 1539 aa11.74□□□□□ -0.53
MSH4-201ENST00000263187 PIK3C2GO75747 1445 aa11.74□□□□□ -0.53
MSH4-201ENST00000263187 NOS1P29475 1434 aa11.74□□□□□ -0.53
MSH4-201ENST00000263187 ERVK-7P63135 1459 aa11.74□□□□□ -0.53
MSH4-201ENST00000263187 RARSP54136 660 aaKnown RBP11.73□□□□□ -0.53
MSH4-201ENST00000263187 FBLN1P23142 703 aa11.72□□□□□ -0.53
MSH4-201ENST00000263187 GGNBP2Q9H3C7 697 aa11.72□□□□□ -0.53
MSH4-201ENST00000263187 ABCA6Q8N139 1617 aa11.72□□□□□ -0.53
MSH4-201ENST00000263187 SIGLEC1Q9BZZ2 1709 aa11.72□□□□□ -0.53
MSH4-201ENST00000263187 LAMC1P11047 1609 aa11.71□□□□□ -0.53
MSH4-201ENST00000263187 ARHGEF40Q8TER5 1519 aa11.71□□□□□ -0.53
MSH4-201ENST00000263187 RUNDC1Q96C34 613 aa11.71□□□□□ -0.53
MSH4-201ENST00000263187 MLH3Q9UHC1 1453 aa11.71□□□□□ -0.53
MSH4-201ENST00000263187 REREQ9P2R6 1566 aa11.71□□□□□ -0.53
MSH4-201ENST00000263187 RNF17Q9BXT8 1623 aaKnown RBP11.71□□□□□ -0.54
MSH4-201ENST00000263187 TRPM2O94759 1503 aa11.71□□□□□ -0.54
MSH4-201ENST00000263187 INSRP06213 1382 aa11.71□□□□□ -0.54
MSH4-201ENST00000263187 CGNL1Q0VF96 1302 aa11.71□□□□□ -0.54
MSH4-201ENST00000263187 PDZRN3Q9UPQ7 1066 aa11.71□□□□□ -0.54
MSH4-201ENST00000263187 PTPRTO14522 1441 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 USP19O94966 1318 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 SRPK2P78362 688 aaKnown RBP11.7□□□□□ -0.54
MSH4-201ENST00000263187 SYNMO15061 1565 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 DIP2CQ9Y2E4 1556 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 ATP7AQ04656 1500 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 IQGAP1P46940 1657 aa11.7□□□□□ -0.54
MSH4-201ENST00000263187 FTSJ3Q8IY81 847 aaKnown RBP11.7□□□□□ -0.54
MSH4-201ENST00000263187 RTEL1-TNFRSF6BF6WH68 1400 aa11.69□□□□□ -0.54
MSH4-201ENST00000263187 RAPGEF3O95398 923 aa11.69□□□□□ -0.54
MSH4-201ENST00000263187 PDE3AQ14432 1141 aa11.69□□□□□ -0.54
MSH4-201ENST00000263187 POGKQ9P215 609 aa11.69□□□□□ -0.54
MSH4-201ENST00000263187 CFAP53Q96M91 514 aa11.68□□□□□ -0.54
MSH4-201ENST00000263187 MINK1Q8N4C8 1332 aaPredicted RBP11.67□□□□□ -0.54
MSH4-201ENST00000263187 MYOM1P52179 1685 aa11.67□□□□□ -0.54
MSH4-201ENST00000263187 EXOSC9Q06265 439 aaKnown RBP11.67□□□□□ -0.54
MSH4-201ENST00000263187 ITPRIPQ8IWB1 547 aa11.67□□□□□ -0.54
MSH4-201ENST00000263187 SMC4Q9NTJ3 1288 aa11.67□□□□□ -0.54
MSH4-201ENST00000263187 SPHKAPQ2M3C7 1700 aa11.67□□□□□ -0.54
MSH4-201ENST00000263187 MFAP1P55081 439 aaKnown RBP11.67□□□□□ -0.54
MSH4-201ENST00000263187 GZF1Q9H116 711 aaPredicted RBP11.67□□□□□ -0.54
MSH4-201ENST00000263187 KDM5AP29375 1690 aaKnown RBP11.66□□□□□ -0.54
MSH4-201ENST00000263187 STAC3Q96MF2 364 aa11.66□□□□□ -0.54
MSH4-201ENST00000263187 NPC1L1Q9UHC9 1359 aa11.65□□□□□ -0.54
MSH4-201ENST00000263187 C14orf93Q9H972 538 aaKnown RBP11.65□□□□□ -0.54
MSH4-201ENST00000263187 POLR3AO14802 1390 aaPredicted RBP11.65□□□□□ -0.55
MSH4-201ENST00000263187 ELL2O00472 640 aaPredicted RBP11.64□□□□□ -0.55
MSH4-201ENST00000263187 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.64□□□□□ -0.55
MSH4-201ENST00000263187 UPF2Q9HAU5 1272 aaKnown RBP11.64□□□□□ -0.55
MSH4-201ENST00000263187 PMFBP1Q8TBY8 1022 aa11.64□□□□□ -0.55
MSH4-201ENST00000263187 MAPK8IP3Q9UPT6 1336 aa11.64□□□□□ -0.55
MSH4-201ENST00000263187 CEP152O94986 1710 aa11.63□□□□□ -0.55
MSH4-201ENST00000263187 EIF5BO60841 1220 aaKnown RBP11.63□□□□□ -0.55
MSH4-201ENST00000263187 DEPDC5O75140 1603 aa11.63□□□□□ -0.55
MSH4-201ENST00000263187 BECN1Q14457 450 aa11.63□□□□□ -0.55
MSH4-201ENST00000263187 DZIP1LQ8IYY4 767 aaKnown RBP11.63□□□□□ -0.55
MSH4-201ENST00000263187 SSH1Q8WYL5 1049 aa11.63□□□□□ -0.55
MSH4-201ENST00000263187 RWDD1Q9H446 243 aaPredicted RBP11.63□□□□□ -0.55
MSH4-201ENST00000263187 YEATS2Q9ULM3 1422 aa11.63□□□□□ -0.55
MSH4-201ENST00000263187 THUMPD2Q9BTF0 503 aaKnown RBP11.62□□□□□ -0.55
MSH4-201ENST00000263187 MYH16Q9H6N6 1097 aa11.62□□□□□ -0.55
MSH4-201ENST00000263187 NOB1Q9ULX3 412 aaKnown RBP11.62□□□□□ -0.55
MSH4-201ENST00000263187 ZKSCAN2Q63HK3 967 aa11.62□□□□□ -0.55
MSH4-201ENST00000263187 TBC1D2Q9BYX2 928 aa11.62□□□□□ -0.55
MSH4-201ENST00000263187 EVC2Q86UK5 1308 aa11.62□□□□□ -0.55
MSH4-201ENST00000263187 TRIM27P14373 513 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 RIPK4P57078 832 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 MVPQ14764 893 aaKnown RBP11.61□□□□□ -0.55
MSH4-201ENST00000263187 AGLP35573 1532 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 WDR63Q8IWG1 891 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 C1orf115Q9H7X2 142 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 IDI1Q13907 227 aa11.61□□□□□ -0.55
MSH4-201ENST00000263187 TET3O43151 1660 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 NPATQ14207 1427 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 SLC24A1O60721 1099 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 HMOX1P09601 288 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 FOXD4L1Q9NU39 408 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 TMPOP42166 694 aaKnown RBP11.6□□□□□ -0.55
MSH4-201ENST00000263187 PRAM1Q96QH2 718 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 LNPKQ9C0E8 428 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 MROH1Q8NDA8 1641 aa11.6□□□□□ -0.55
MSH4-201ENST00000263187 TMEM57Q8N5G2 664 aa11.59□□□□□ -0.55
MSH4-201ENST00000263187 MROH2AA6NES4 1674 aa11.59□□□□□ -0.55
MSH4-201ENST00000263187 TBC1D32Q96NH3 1257 aa11.58□□□□□ -0.56
MSH4-201ENST00000263187 TRIM35Q9UPQ4 493 aa11.58□□□□□ -0.56
MSH4-201ENST00000263187 FBXO31Q5XUX0 539 aaPredicted RBP11.58□□□□□ -0.56
MSH4-201ENST00000263187 CABP1Q9NZU7 370 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 STAG3Q9UJ98 1225 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 VGFO15240 615 aaPredicted RBP11.57□□□□□ -0.56
MSH4-201ENST00000263187 PHF23Q9BUL5 403 aaPredicted RBP11.57□□□□□ -0.56
MSH4-201ENST00000263187 FYB1O15117 783 aa11.57□□□□□ -0.56
MSH4-201ENST00000263187 PRKCSHP14314 528 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms