RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 C14orf93Q9H972 538 aaKnown RBP13.26□□□□□ -0.29
COPB1-201ENST00000249923 PRKCSHP14314 528 aaPredicted RBP13.25□□□□□ -0.29
COPB1-201ENST00000249923 POLR3AO14802 1390 aaPredicted RBP13.25□□□□□ -0.29
COPB1-201ENST00000249923 CD109Q6YHK3 1445 aa13.25□□□□□ -0.29
COPB1-201ENST00000249923 NEXMIFQ5QGS0 1516 aa13.25□□□□□ -0.29
COPB1-201ENST00000249923 USP32Q8NFA0 1604 aa13.24□□□□□ -0.29
COPB1-201ENST00000249923 GGT6Q6P531 493 aa13.24□□□□□ -0.29
COPB1-201ENST00000249923 NUTM2DQ5VT03 806 aaPredicted RBP13.24□□□□□ -0.29
COPB1-201ENST00000249923 CHGAP10645 457 aaKnown RBP13.23□□□□□ -0.29
COPB1-201ENST00000249923 SLC4A3P48751 1232 aa13.23□□□□□ -0.29
COPB1-201ENST00000249923 C8orf34Q49A92 452 aa13.23□□□□□ -0.29
COPB1-201ENST00000249923 TNNT2P45379 298 aaPredicted RBP13.23□□□□□ -0.29
COPB1-201ENST00000249923 WWC1Q8IX03 1113 aa13.22□□□□□ -0.29
COPB1-201ENST00000249923 DIP2CQ9Y2E4 1556 aa13.22□□□□□ -0.29
COPB1-201ENST00000249923 MYO5BQ9ULV0 1848 aa13.22□□□□□ -0.29
COPB1-201ENST00000249923 RAPGEF3O95398 923 aa13.22□□□□□ -0.29
COPB1-201ENST00000249923 CFAP74Q9C0B2 1584 aa13.21□□□□□ -0.29
COPB1-201ENST00000249923 CENPQQ7L2Z9 268 aaPredicted RBP13.21□□□□□ -0.29
COPB1-201ENST00000249923 IGHDP01880 384 aa13.21□□□□□ -0.3
COPB1-201ENST00000249923 PHF23Q9BUL5 403 aaPredicted RBP13.2□□□□□ -0.3
COPB1-201ENST00000249923 RRP7AQ9Y3A4 280 aaKnown RBP13.2□□□□□ -0.3
COPB1-201ENST00000249923 E9PSI1 815 aa13.19□□□□□ -0.3
COPB1-201ENST00000249923 RICTORQ6R327 1708 aa13.19□□□□□ -0.3
COPB1-201ENST00000249923 TNNQ9UQP3 1299 aa13.19□□□□□ -0.3
COPB1-201ENST00000249923 SENP3Q9H4L4 574 aaPredicted RBP13.17□□□□□ -0.3
COPB1-201ENST00000249923 VIRMAQ69YN4 1812 aaKnown RBP13.17□□□□□ -0.3
COPB1-201ENST00000249923 PANK1Q8TE04 598 aa13.17□□□□□ -0.3
COPB1-201ENST00000249923 MORC1Q86VD1 984 aa13.16□□□□□ -0.3
COPB1-201ENST00000249923 YEATS2Q9ULM3 1422 aa13.16□□□□□ -0.3
COPB1-201ENST00000249923 MTHFSP49914 203 aa13.16□□□□□ -0.3
COPB1-201ENST00000249923 NEUROD2Q15784 382 aa13.16□□□□□ -0.3
COPB1-201ENST00000249923 ADGRB2O60241 1585 aa13.16□□□□□ -0.3
COPB1-201ENST00000249923 TCP11L2Q8N4U5 519 aa13.15□□□□□ -0.3
COPB1-201ENST00000249923 RLBP1P12271 317 aa13.15□□□□□ -0.3
COPB1-201ENST00000249923 SLC24A1O60721 1099 aa13.15□□□□□ -0.3
COPB1-201ENST00000249923 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 RGS3P49796 1198 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 CABP2Q9NPB3 220 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 IDI1Q13907 227 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 TMEM131LA2VDJ0 1609 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 ANKRD36BQ8N2N9 1353 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 COG6Q9Y2V7 657 aa13.14□□□□□ -0.31
COPB1-201ENST00000249923 RPGRIP1LQ68CZ1 1315 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 PTPRMP28827 1452 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 USP19O94966 1318 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 COL3A1P02461 1466 aaPredicted RBP13.13□□□□□ -0.31
COPB1-201ENST00000249923 NLRP1Q9C000 1473 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 A0A1W2PP64 1363 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 RARSP54136 660 aaKnown RBP13.13□□□□□ -0.31
COPB1-201ENST00000249923 SAFB2Q14151 953 aaKnown RBP eCLIP13.13□□□□□ -0.31
COPB1-201ENST00000249923 FAM161AQ3B820 660 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.13□□□□□ -0.31
COPB1-201ENST00000249923 NEO1Q92859 1461 aa13.13□□□□□ -0.31
COPB1-201ENST00000249923 RUNDC1Q96C34 613 aa13.12□□□□□ -0.31
COPB1-201ENST00000249923 PREX1Q8TCU6 1659 aa13.12□□□□□ -0.31
COPB1-201ENST00000249923 ARHGAP31Q2M1Z3 1444 aa13.12□□□□□ -0.31
COPB1-201ENST00000249923 BCL2L13Q9BXK5 485 aa13.11□□□□□ -0.31
COPB1-201ENST00000249923 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
COPB1-201ENST00000249923 CGNL1Q0VF96 1302 aa13.11□□□□□ -0.31
COPB1-201ENST00000249923 SEC24BO95487 1268 aa13.11□□□□□ -0.31
COPB1-201ENST00000249923 PDE3AQ14432 1141 aa13.11□□□□□ -0.31
COPB1-201ENST00000249923 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
COPB1-201ENST00000249923 ABCC11Q96J66 1382 aa13.1□□□□□ -0.31
COPB1-201ENST00000249923 NPM1P06748 294 aaKnown RBP eCLIP13.09□□□□□ -0.31
COPB1-201ENST00000249923 CLUAP1Q96AJ1 413 aa13.09□□□□□ -0.31
COPB1-201ENST00000249923 NGEFQ8N5V2 710 aa13.09□□□□□ -0.31
COPB1-201ENST00000249923 CLTCQ00610 1675 aaKnown RBP13.09□□□□□ -0.31
COPB1-201ENST00000249923 ZFYVE9O95405 1425 aa13.09□□□□□ -0.31
COPB1-201ENST00000249923 EVC2Q86UK5 1308 aa13.08□□□□□ -0.31
COPB1-201ENST00000249923 FRAT1Q92837 279 aaPredicted RBP13.08□□□□□ -0.31
COPB1-201ENST00000249923 PLEKHF1Q96S99 279 aa13.08□□□□□ -0.32
COPB1-201ENST00000249923 ANKRD26Q9UPS8 1709 aa13.08□□□□□ -0.32
COPB1-201ENST00000249923 BRPF3Q9ULD4 1205 aa13.08□□□□□ -0.32
COPB1-201ENST00000249923 CCDC27Q2M243 656 aa13.07□□□□□ -0.32
COPB1-201ENST00000249923 STK26Q9P289 416 aa13.07□□□□□ -0.32
COPB1-201ENST00000249923 VGFO15240 615 aaPredicted RBP13.07□□□□□ -0.32
COPB1-201ENST00000249923 FBXO31Q5XUX0 539 aaPredicted RBP13.06□□□□□ -0.32
COPB1-201ENST00000249923 WDR63Q8IWG1 891 aa13.06□□□□□ -0.32
COPB1-201ENST00000249923 PUS7Q96PZ0 661 aaKnown RBP13.06□□□□□ -0.32
COPB1-201ENST00000249923 GGNBP2Q9H3C7 697 aa13.06□□□□□ -0.32
COPB1-201ENST00000249923 NINLQ9Y2I6 1382 aa13.06□□□□□ -0.32
COPB1-201ENST00000249923 TSR2Q969E8 191 aaKnown RBP13.05□□□□□ -0.32
COPB1-201ENST00000249923 NSD2O96028 1365 aa13.05□□□□□ -0.32
COPB1-201ENST00000249923 TRIM35Q9UPQ4 493 aa13.05□□□□□ -0.32
COPB1-201ENST00000249923 U2AF1L5P0DN76 240 aaPredicted RBP13.04□□□□□ -0.32
COPB1-201ENST00000249923 U2AF1Q01081 240 aaKnown RBP eCLIP13.04□□□□□ -0.32
COPB1-201ENST00000249923 FYB1O15117 783 aa13.04□□□□□ -0.32
COPB1-201ENST00000249923 ALKQ9UM73 1620 aa13.04□□□□□ -0.32
COPB1-201ENST00000249923 ARHGEF40Q8TER5 1519 aa13.04□□□□□ -0.32
COPB1-201ENST00000249923 SETD1AO15047 1707 aaKnown RBP13.04□□□□□ -0.32
COPB1-201ENST00000249923 YTHDC2Q9H6S0 1430 aaKnown RBP13.04□□□□□ -0.32
COPB1-201ENST00000249923 DDRGK1Q96HY6 314 aa13.03□□□□□ -0.32
COPB1-201ENST00000249923 PRAM1Q96QH2 718 aa13.03□□□□□ -0.32
COPB1-201ENST00000249923 MINK1Q8N4C8 1332 aaPredicted RBP13.03□□□□□ -0.32
COPB1-201ENST00000249923 FBLN1P23142 703 aa13.03□□□□□ -0.32
COPB1-201ENST00000249923 NFKBIBQ15653 356 aa13.02□□□□□ -0.32
COPB1-201ENST00000249923 CANXP27824 592 aaKnown RBP13.01□□□□□ -0.33
COPB1-201ENST00000249923 KIF20BQ96Q89 1820 aa13.01□□□□□ -0.33
COPB1-201ENST00000249923 SRPK2P78362 688 aaKnown RBP13.01□□□□□ -0.33
COPB1-201ENST00000249923 USP35Q9P2H5 1018 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms