RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 MINK1Q8N4C8 1332 aaPredicted RBP38.3■■■■□ 3.72
CHMP4B-201ENST00000217402 C14orf37Q86TY3 774 aa38.28■■■■□ 3.72
CHMP4B-201ENST00000217402 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.28■■■■□ 3.72
CHMP4B-201ENST00000217402 TESK2Q96S53 571 aa38.24■■■■□ 3.71
CHMP4B-201ENST00000217402 NALCNQ8IZF0 1738 aa38.24■■■■□ 3.71
CHMP4B-201ENST00000217402 ADGRL3Q9HAR2 1447 aa38.22■■■■□ 3.71
CHMP4B-201ENST00000217402 XIRP1Q702N8 1843 aaKnown RBP38.21■■■■□ 3.71
CHMP4B-201ENST00000217402 SBNO2Q9Y2G9 1366 aa38.21■■■■□ 3.71
CHMP4B-201ENST00000217402 NCOA3Q9Y6Q9 1424 aa38.18■■■■□ 3.7
CHMP4B-201ENST00000217402 ADGRB2O60241 1585 aa38.17■■■■□ 3.7
CHMP4B-201ENST00000217402 TULP4Q9NRJ4 1543 aa38.15■■■■□ 3.7
CHMP4B-201ENST00000217402 MSH6P52701 1360 aa38.12■■■■□ 3.69
CHMP4B-201ENST00000217402 DISP3Q9P2K9 1392 aa38.12■■■■□ 3.69
CHMP4B-201ENST00000217402 C19orf44Q9H6X5 657 aa38.12■■■■□ 3.69
CHMP4B-201ENST00000217402 EVC2Q86UK5 1308 aa38.11■■■■□ 3.69
CHMP4B-201ENST00000217402 CDC42BPGQ6DT37 1551 aa38.11■■■■□ 3.69
CHMP4B-201ENST00000217402 TMF1P82094 1093 aa38.11■■■■□ 3.69
CHMP4B-201ENST00000217402 WASLO00401 505 aaPredicted RBP38.09■■■■□ 3.69
CHMP4B-201ENST00000217402 CDK19Q9BWU1 502 aa38.08■■■■□ 3.69
CHMP4B-201ENST00000217402 SLC24A1O60721 1099 aa38.07■■■■□ 3.68
CHMP4B-201ENST00000217402 SRPK2P78362 688 aaKnown RBP38.05■■■■□ 3.68
CHMP4B-201ENST00000217402 NUTM2FA1L443 756 aa38.04■■■■□ 3.68
CHMP4B-201ENST00000217402 CABP2Q9NPB3 220 aa38.04■■■■□ 3.68
CHMP4B-201ENST00000217402 DCCP43146 1447 aa38.04■■■■□ 3.68
CHMP4B-201ENST00000217402 C11orf95C9JLR9 678 aaPredicted RBP38.03■■■■□ 3.68
CHMP4B-201ENST00000217402 ATF3P18847 181 aa38.03■■■■□ 3.68
CHMP4B-201ENST00000217402 FMN2Q9NZ56 1722 aa38.01■■■■□ 3.68
CHMP4B-201ENST00000217402 POLR3GLQ9BT43 218 aa38■■■■□ 3.67
CHMP4B-201ENST00000217402 CADPS2Q86UW7 1296 aa37.98■■■■□ 3.67
CHMP4B-201ENST00000217402 CERKQ8TCT0 537 aa37.97■■■■□ 3.67
CHMP4B-201ENST00000217402 CDCA8Q53HL2 280 aa37.96■■■■□ 3.67
CHMP4B-201ENST00000217402 KIF7Q2M1P5 1343 aa37.95■■■■□ 3.67
CHMP4B-201ENST00000217402 PRR36Q9H6K5 1346 aa37.94■■■■□ 3.66
CHMP4B-201ENST00000217402 ATP7BP35670 1465 aa37.93■■■■□ 3.66
CHMP4B-201ENST00000217402 USP32Q8NFA0 1604 aa37.93■■■■□ 3.66
CHMP4B-201ENST00000217402 NUDT16Q96DE0 195 aaKnown RBP37.92■■■■□ 3.66
CHMP4B-201ENST00000217402 MST1RQ04912 1400 aa37.92■■■■□ 3.66
CHMP4B-201ENST00000217402 ZNF316A6NFI3 1004 aaPredicted RBP37.91■■■■□ 3.66
CHMP4B-201ENST00000217402 ANKARQ7Z5J8 1434 aa37.91■■■■□ 3.66
CHMP4B-201ENST00000217402 WASHC2AQ641Q2 1341 aa37.91■■■■□ 3.66
CHMP4B-201ENST00000217402 IQSEC2Q5JU85 1478 aa37.91■■■■□ 3.66
CHMP4B-201ENST00000217402 CCDC7Q96M83 1385 aa37.9■■■■□ 3.66
CHMP4B-201ENST00000217402 ATAD2Q6PL18 1390 aa37.89■■■■□ 3.66
CHMP4B-201ENST00000217402 C1orf167Q5SNV9 1468 aa37.87■■■■□ 3.65
CHMP4B-201ENST00000217402 PUS7Q96PZ0 661 aaKnown RBP37.87■■■■□ 3.65
CHMP4B-201ENST00000217402 RGPD8O14715 1765 aaPredicted RBP37.86■■■■□ 3.65
CHMP4B-201ENST00000217402 TMC1Q8TDI8 760 aa37.83■■■■□ 3.65
CHMP4B-201ENST00000217402 SLAIN2Q9P270 581 aa37.83■■■■□ 3.65
CHMP4B-201ENST00000217402 CCDC61Q9Y6R9 512 aa37.83■■■■□ 3.65
CHMP4B-201ENST00000217402 TOPAZ1Q8N9V7 1692 aa37.83■■■■□ 3.65
CHMP4B-201ENST00000217402 PPIP5K1Q6PFW1 1433 aa37.83■■■■□ 3.65
CHMP4B-201ENST00000217402 ESCO1Q5FWF5 840 aa37.81■■■■□ 3.64
CHMP4B-201ENST00000217402 ITSN1Q15811 1721 aa37.81■■■■□ 3.64
CHMP4B-201ENST00000217402 ORAI2Q96SN7 254 aa37.8■■■■□ 3.64
CHMP4B-201ENST00000217402 CABP1Q9NZU7 370 aa37.79■■■■□ 3.64
CHMP4B-201ENST00000217402 MYOM1P52179 1685 aa37.79■■■■□ 3.64
CHMP4B-201ENST00000217402 UBAP1LF5GYI3 381 aa37.78■■■■□ 3.64
CHMP4B-201ENST00000217402 SLC12A5Q9H2X9 1139 aa37.77■■■■□ 3.64
CHMP4B-201ENST00000217402 TOM1O60784 492 aa37.76■■■■□ 3.64
CHMP4B-201ENST00000217402 PMFBP1Q8TBY8 1022 aa37.76■■■■□ 3.64
CHMP4B-201ENST00000217402 PHF8Q9UPP1 1060 aa37.73■■■■□ 3.63
CHMP4B-201ENST00000217402 NINLQ9Y2I6 1382 aa37.72■■■■□ 3.63
CHMP4B-201ENST00000217402 BRINP3Q76B58 766 aa37.71■■■■□ 3.63
CHMP4B-201ENST00000217402 PLEKHG3A1L390 1219 aa37.69■■■■□ 3.62
CHMP4B-201ENST00000217402 PIP4K2BP78356 416 aa37.69■■■■□ 3.62
CHMP4B-201ENST00000217402 SCAF1Q9H7N4 1312 aaKnown RBP37.67■■■■□ 3.62
CHMP4B-201ENST00000217402 KIF1AQ12756 1690 aa37.67■■■■□ 3.62
CHMP4B-201ENST00000217402 NGDNQ8NEJ9 315 aaKnown RBP37.67■■■■□ 3.62
CHMP4B-201ENST00000217402 ACEP12821 1306 aa37.67■■■■□ 3.62
CHMP4B-201ENST00000217402 CD163L1Q9NR16 1453 aa37.66■■■■□ 3.62
CHMP4B-201ENST00000217402 ROBO1Q9Y6N7 1651 aa37.65■■■■□ 3.62
CHMP4B-201ENST00000217402 FOXO3O43524 673 aa37.63■■■■□ 3.61
CHMP4B-201ENST00000217402 TERF2IPQ9NYB0 399 aa37.63■■■■□ 3.61
CHMP4B-201ENST00000217402 A0A1W2PP64 1363 aa37.63■■■■□ 3.61
CHMP4B-201ENST00000217402 POLR3AO14802 1390 aaPredicted RBP37.63■■■■□ 3.61
CHMP4B-201ENST00000217402 ANKRD36BQ8N2N9 1353 aa37.62■■■■□ 3.61
CHMP4B-201ENST00000217402 HDGFL2Q7Z4V5 671 aaPredicted RBP37.61■■■■□ 3.61
CHMP4B-201ENST00000217402 DDX10Q13206 875 aaKnown RBP37.61■■■■□ 3.61
CHMP4B-201ENST00000217402 DDX17Q92841 729 aaKnown RBP37.61■■■■□ 3.61
CHMP4B-201ENST00000217402 PANK3Q9H999 370 aa37.6■■■■□ 3.61
CHMP4B-201ENST00000217402 CPSF1Q10570 1443 aaKnown RBP37.59■■■■□ 3.61
CHMP4B-201ENST00000217402 KTN1Q86UP2 1357 aaKnown RBP37.57■■■■□ 3.61
CHMP4B-201ENST00000217402 AKAP12Q02952 1782 aa37.57■■■■□ 3.6
CHMP4B-201ENST00000217402 XPCQ01831 940 aaPredicted RBP37.57■■■■□ 3.6
CHMP4B-201ENST00000217402 PSME1Q06323 249 aa37.54■■■■□ 3.6
CHMP4B-201ENST00000217402 NPHP3Q7Z494 1330 aa37.54■■■■□ 3.6
CHMP4B-201ENST00000217402 USP6P35125 1406 aa37.53■■■■□ 3.6
CHMP4B-201ENST00000217402 ZNF692Q9BU19 519 aaPredicted RBP37.53■■■■□ 3.6
CHMP4B-201ENST00000217402 MON2Q7Z3U7 1717 aa37.52■■■■□ 3.6
CHMP4B-201ENST00000217402 CARD14Q9BXL6 1004 aa37.51■■■■□ 3.6
CHMP4B-201ENST00000217402 NHSL1Q5SYE7 1610 aa37.5■■■■□ 3.59
CHMP4B-201ENST00000217402 NSD3Q9BZ95 1437 aa37.5■■■■□ 3.59
CHMP4B-201ENST00000217402 KRT28Q7Z3Y7 464 aa37.49■■■■□ 3.59
CHMP4B-201ENST00000217402 PXDNQ92626 1479 aa37.47■■■■□ 3.59
CHMP4B-201ENST00000217402 EDC4Q6P2E9 1401 aaKnown RBP37.46■■■■□ 3.59
CHMP4B-201ENST00000217402 NRKQ7Z2Y5 1582 aa37.46■■■■□ 3.59
CHMP4B-201ENST00000217402 AHDC1Q5TGY3 1603 aaPredicted RBP37.45■■■■□ 3.59
CHMP4B-201ENST00000217402 PAK3O75914 559 aaPredicted RBP37.44■■■■□ 3.58
CHMP4B-201ENST00000217402 SUGP2Q8IX01 1082 aaKnown RBP eCLIP37.44■■■■□ 3.582e-6■■■■□ 20.3
CHMP4B-201ENST00000217402 SSH2Q76I76 1423 aa37.42■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms