RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Hnrnpul1Q8VDM6 859 aaKnown RBP19.82■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Polr3gQ6NXY9 223 aa19.81■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 OptnQ8K3K8 584 aa19.81■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Tmco3Q8BH01 678 aa19.81■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Me1P06801 572 aa19.8■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Q9D2X8 372 aa19.8■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Nat10Q8K224 1024 aaKnown RBP19.8■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Zscan10Q3URR7 782 aa19.8■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Mrvi1Q9WUX5 899 aaKnown RBP19.8■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Stim1P70302 685 aa19.79■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Cecr2E9Q2Z1 1453 aa19.79■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Ccdc183A2AJB1 534 aa19.79■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Inpp5dQ9ES52 1191 aa19.79■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Trim55G3X8Y1 545 aa19.78■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Ercc6lQ8BHK9 1240 aa19.78■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Paf1Q8K2T8 535 aa19.78■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Triml2E9PW10 424 aa19.78■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Cyp46a1Q9WVK8 500 aa19.78■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Fez1Q8K0X8 392 aa19.77■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Mad1l1Q9WTX8 717 aaKnown RBP19.77■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Eif3aP23116 1344 aaKnown RBP19.77■□□□□ 0.76
Ccdc88a-201ENSMUST00000040182 Lrrc45Q8CIM1 670 aa19.77■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Q8C5K5 320 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 SelenooQ9DBC0 667 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Map9Q3TRR0 646 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Ric3Q8BPM6 367 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Arid3cA6PWV5 409 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Ccdc96Q9CR92 584 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Gsto1O09131 240 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Bag1Q60739 355 aa19.76■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Fam184aE9PW83 1143 aa19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Ccdc30Q8BVF4 654 aa19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Ipo4Q8VI75 1082 aa19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Zkscan1Q8BGS3 561 aaKnown RBP19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Znf771Q8BJ90 317 aa19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Prl7d1P04769 244 aa19.75■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Jakmip2D3YXK0 820 aa19.74■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Usp40Q8BWR4 1235 aa19.74■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Zkscan2G3X952 960 aa19.74■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Gcc1Q9D4H2 778 aa19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 ScaperF8VQ70 1398 aaKnown RBP19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Sart1Q9Z315 806 aaKnown RBP19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Hmox1P14901 289 aa19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Sv2bQ8BG39 683 aa19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Med4Q9CQA5 270 aa19.73■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 A0A0U1RNP2 1173 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Neurod6P48986 337 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Kif20aP97329 887 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Swt1Q9DBQ9 907 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Rab3gap2Q8BMG7 1366 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Cc2d2bA0A286YDU8 1405 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Ppp2r3aB2RXC8 1150 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Fam13bQ8K2H3 851 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Usp16Q99LG0 825 aa19.72■□□□□ 0.75
Ccdc88a-201ENSMUST00000040182 Dnaaf4Q8R368 420 aa19.7■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Phldb1Q6PDH0 1371 aaKnown RBP19.7■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Podxl2Q8CAE9 603 aa19.7■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Commd10Q8JZY2 202 aa19.69■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Odf2lQ9D478 642 aa19.69■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Usp48Q3V0C5 1052 aa19.69■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Gbp4Q61107 620 aa19.69■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Cdkl5Q3UTQ8 938 aa19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 PogkQ80TC5 607 aa19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 KarsQ99MN1 595 aaKnown RBP19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Arhgap5P97393 1501 aa19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Gm21190A0A0G2JGJ6 266 aa19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Senp3Q9EP97 568 aaKnown RBP19.68■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Cc2d1aQ8K1A6 943 aa19.67■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Rbm25B2RY56 838 aaKnown RBP19.67■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Top2aQ01320 1528 aaKnown RBP19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Spag5Q7TME2 1165 aa19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Cavin1O54724 392 aa19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Iqgap2Q3UQ44 1575 aa19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Cep89Q9CZX2 791 aa19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 MicalclQ9D5U9 680 aa19.66■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Rhot2Q8JZN7 620 aa19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Gtf2a1Q99PM3 378 aa19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Lrrfip1Q3UZ39 729 aaKnown RBP19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Ccdc83Q9D4V3 305 aa19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Ehmt1Q5DW34 1296 aa19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Atad2bE9Q166 1460 aaKnown RBP19.65■□□□□ 0.74
Ccdc88a-201ENSMUST00000040182 Erc1Q99MI1 1120 aa19.64■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 TnmdQ9EP64 317 aa19.64■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Stk38Q91VJ4 465 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Fyb1O35601 819 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 NefhP19246 1090 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 CenpqQ9CPQ5 267 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Otud6bQ8K2H2 294 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Q9D9S1 216 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Nek4Q9Z1J2 792 aa19.63■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Arglu1Q3UL36 271 aaKnown RBP19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 TxlnaQ6PAM1 554 aaKnown RBP19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Rbm28Q8CGC6 750 aaKnown RBP19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Ift140E9PY46 1464 aa19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Ttll5Q8CHB8 1328 aa19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 LrpprcQ6PB66 1392 aaKnown RBP19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Esx1O88933 382 aa19.62■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 NinlQ6ZQ12 1394 aa19.61■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Gtf2f1Q3THK3 508 aaKnown RBP19.61■□□□□ 0.73
Ccdc88a-201ENSMUST00000040182 Cavin4A2AMM0 362 aa19.61■□□□□ 0.73
Retrieved 100 of 22,080 RNA–protein pairs in 12.4 ms