RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W VAM10Q08474 114 aa2.39□□□□□ -2.03
USE1YGL098W YPR010C-AA5Z2X5 72 aa2.38□□□□□ -2.03
USE1YGL098W EDC2P40023 145 aaPredicted RBP2.38□□□□□ -2.03
USE1YGL098W SDH6Q3E785 79 aa2.38□□□□□ -2.03
USE1YGL098W YNL146C-AQ3E7Z1 64 aa2.38□□□□□ -2.03
USE1YGL098W YIL046W-AQ3E7Z4 54 aa2.38□□□□□ -2.03
USE1YGL098W RPL29P05747 59 aaPredicted RBP2.37□□□□□ -2.03
USE1YGL098W YMR122W-AQ3E842 84 aa2.37□□□□□ -2.03
USE1YGL098W YLR157W-DP0CE99 70 aa2.36□□□□□ -2.03
USE1YGL098W QCR10P37299 77 aa2.36□□□□□ -2.03
USE1YGL098W YGR025WP53216 100 aa2.36□□□□□ -2.03
USE1YGL098W YOR011W-AQ3E807 68 aa2.36□□□□□ -2.03
USE1YGL098W YMR001C-AQ8TGS9 76 aa2.36□□□□□ -2.03
USE1YGL098W YBR182C-AQ8TGU6 64 aa2.36□□□□□ -2.03
USE1YGL098W BLM10P43583 2143 aa2.36□□□□□ -2.03
USE1YGL098W RPS11AP0CX47 156 aaKnown RBP2.35□□□□□ -2.03
USE1YGL098W RPS11BP0CX48 156 aaKnown RBP2.35□□□□□ -2.03
USE1YGL098W YCR001WP25347 104 aa2.35□□□□□ -2.03
USE1YGL098W YBR219CP38317 127 aa2.35□□□□□ -2.03
USE1YGL098W SNA2P56508 79 aa2.35□□□□□ -2.03
USE1YGL098W MRPS8Q03799 155 aa2.35□□□□□ -2.03
USE1YGL098W YDL241WQ07738 123 aa2.35□□□□□ -2.03
USE1YGL098W TMC1Q08422 150 aaPredicted RBP2.35□□□□□ -2.03
USE1YGL098W YHR213W-BQ8TGK1 99 aa2.35□□□□□ -2.03
USE1YGL098W YAR023CD6VPM8 179 aa2.34□□□□□ -2.03
USE1YGL098W YOL013W-AP0C272 63 aaPredicted RBP2.34□□□□□ -2.03
USE1YGL098W MVB12P42939 101 aa2.34□□□□□ -2.03
USE1YGL098W ATP17Q06405 101 aa2.34□□□□□ -2.03
USE1YGL098W YOL014WQ08110 124 aa2.34□□□□□ -2.03
USE1YGL098W YPR013CQ12145 317 aa2.34□□□□□ -2.03
USE1YGL098W YDR010CQ12426 110 aa2.34□□□□□ -2.03
USE1YGL098W YNL042W-BQ3E7Z2 85 aa2.34□□□□□ -2.03
USE1YGL098W BEM2P39960 2167 aaKnown RBP2.34□□□□□ -2.04
USE1YGL098W YKL097CP34245 136 aa2.33□□□□□ -2.04
USE1YGL098W YGL149WP53116 101 aa2.33□□□□□ -2.04
USE1YGL098W BSC4P53841 131 aa2.33□□□□□ -2.04
USE1YGL098W YIL156W-BQ2V2P4 73 aa2.33□□□□□ -2.04
USE1YGL098W YJL133C-AQ3E7A3 74 aa2.33□□□□□ -2.04
USE1YGL098W POL2P21951 2222 aaKnown RBP2.33□□□□□ -2.04
USE1YGL098W YBL039W-BP0C268 59 aa2.32□□□□□ -2.04
USE1YGL098W AQY2P0CD90 149 aa2.32□□□□□ -2.04
USE1YGL098W MRX7P53869 86 aa2.32□□□□□ -2.04
USE1YGL098W YBR027CP38220 110 aa2.31□□□□□ -2.04
USE1YGL098W YHR125WP38831 101 aa2.31□□□□□ -2.04
USE1YGL098W SOM1Q05676 74 aa2.31□□□□□ -2.04
USE1YGL098W HOR7Q05827 59 aa2.31□□□□□ -2.04
USE1YGL098W ECM19Q06011 112 aa2.31□□□□□ -2.04
USE1YGL098W YCL048W-AQ2V2Q2 79 aa2.31□□□□□ -2.04
USE1YGL098W YNL162W-AQ3E7A8 72 aa2.31□□□□□ -2.04
USE1YGL098W YLR307C-AQ3E825 87 aa2.31□□□□□ -2.04
USE1YGL098W YJL127C-BQ3E828 52 aa2.31□□□□□ -2.04
USE1YGL098W FAS1P07149 2051 aaKnown RBP2.3□□□□□ -2.04
USE1YGL098W SEC16P48415 2195 aaKnown RBP2.3□□□□□ -2.04
USE1YGL098W ACC1Q00955 2233 aaKnown RBP2.3□□□□□ -2.04
USE1YGL098W WWM1P43582 211 aaKnown RBP2.3□□□□□ -2.04
USE1YGL098W YBR230W-AQ3E762 66 aa2.3□□□□□ -2.04
USE1YGL098W YER145C-AA0A023PYF4 145 aa2.29□□□□□ -2.04
USE1YGL098W YNL122CP53921 115 aaPredicted RBP2.29□□□□□ -2.04
USE1YGL098W YFR032C-BQ8TGU2 87 aa2.29□□□□□ -2.04
USE1YGL098W RPC10P40422 70 aa2.28□□□□□ -2.04
USE1YGL098W YAR064WP39563 99 aa2.27□□□□□ -2.05
USE1YGL098W DDR2P89113 61 aa2.27□□□□□ -2.05
USE1YGL098W YGR240C-AQ3E786 66 aa2.27□□□□□ -2.05
USE1YGL098W YJL197C-AP0C5P0 93 aa2.26□□□□□ -2.05
USE1YGL098W AUA1P32450 94 aa2.26□□□□□ -2.05
USE1YGL098W SGF11Q03067 99 aa2.26□□□□□ -2.05
USE1YGL098W LCL2Q08045 131 aa2.25□□□□□ -2.05
USE1YGL098W SEN1Q00416 2231 aaKnown RBP2.25□□□□□ -2.05
USE1YGL098W BRR2P32639 2163 aaKnown RBP2.25□□□□□ -2.05
USE1YGL098W YOR072WQ08486 104 aa2.24□□□□□ -2.05
USE1YGL098W FYV12Q08559 129 aa2.24□□□□□ -2.05
USE1YGL098W YBL008W-AQ3E821 79 aa2.24□□□□□ -2.05
USE1YGL098W Q0032Q9ZZX7 96 aa2.24□□□□□ -2.05
USE1YGL098W YGL014C-AP0C5N1 53 aa2.23□□□□□ -2.05
USE1YGL098W IGD1P43598 195 aa2.23□□□□□ -2.05
USE1YGL098W RDS3Q06835 107 aaPredicted RBP2.23□□□□□ -2.05
USE1YGL098W RTC6O14464 93 aa2.22□□□□□ -2.05
USE1YGL098W YHR007C-AQ07074 71 aa2.22□□□□□ -2.05
USE1YGL098W YOL097W-AQ3E7Y9 61 aa2.21□□□□□ -2.06
USE1YGL098W TAR1Q8TGM6 124 aa2.21□□□□□ -2.06
USE1YGL098W BPH1P25356 2167 aa2.2□□□□□ -2.06
USE1YGL098W FAB1P34756 2278 aa2.2□□□□□ -2.06
USE1YGL098W YPL278CQ08990 100 aa2.2□□□□□ -2.06
USE1YGL098W YBR201C-AQ2V2Q3 67 aa2.2□□□□□ -2.06
USE1YGL098W YGL041C-BQ3E750 60 aa2.2□□□□□ -2.06
USE1YGL098W RPL33AP05744 107 aaKnown RBP2.19□□□□□ -2.06
USE1YGL098W RPL33BP41056 107 aaKnown RBP2.19□□□□□ -2.06
USE1YGL098W YDL012CQ12489 107 aa2.17□□□□□ -2.06
USE1YGL098W COX8P04039 78 aa2.16□□□□□ -2.06
USE1YGL098W YGR146C-AQ8TGT9 53 aa2.15□□□□□ -2.07
USE1YGL098W GIS2P53849 153 aaKnown RBP RIP-Chip data2.14□□□□□ -2.07 RIP-Chip
USE1YGL098W YDR115WQ04598 105 aa2.14□□□□□ -2.07
USE1YGL098W YER175W-AQ8TGU4 54 aa2.14□□□□□ -2.07
USE1YGL098W YLR255CO13574 117 aa2.13□□□□□ -2.07
USE1YGL098W YEL014CP39999 101 aa2.13□□□□□ -2.07
USE1YGL098W YJR128WP47162 119 aa2.13□□□□□ -2.07
USE1YGL098W YHR212W-AP0CX91 67 aa2.12□□□□□ -2.07
USE1YGL098W YCR041WP37265 110 aa2.11□□□□□ -2.07
USE1YGL098W OLI1P61829 76 aa2.11□□□□□ -2.07
USE1YGL098W YDR210WQ03482 75 aa2.11□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms