RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 IFNGR1P15260 489 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 GABRB3P28472 473 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 PBLDP30039 288 aaPredicted RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 HOXA11P31270 313 aaPredicted RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 SLURP1P55000 103 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 RRP1P56182 461 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 SLC26A5P58743 744 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 DDR1Q08345 913 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 TRIM25Q14258 630 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 NFE2L1Q14494 772 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 ADRM1Q16186 407 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 DEPDC1Q5TB30 811 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 CWF19L1Q69YN2 538 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 MFSD5Q6N075 450 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 MTFR2Q6P444 385 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 RPTNQ6XPR3 784 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 EP400NLQ6ZTU2 488 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 TMEM110Q86TL2 294 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 NME9Q86XW9 330 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 CELF5Q8N6W0 485 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 CCDC150Q8NCX0 1101 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 UHMK1Q8TAS1 419 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 FATE1Q969F0 183 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 CHAMP1Q96JM3 812 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 MRGPRX1Q96LB2 322 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 PAIP2Q9BPZ3 127 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 BDH2Q9BUT1 245 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 THUMPD3Q9BV44 507 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 C1orf21Q9H246 121 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 MMADHCQ9H3L0 296 aaPredicted RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 NOD2Q9HC29 1040 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 SARS2Q9NP81 518 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 RAI14Q9P0K7 980 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 HOOK1Q9UJC3 728 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 CAMK2AQ9UQM7 478 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 MTO1Q9Y2Z2 717 aaKnown RBP6.75□□□□□ -1.33
VPS29-210ENST00000552130 C2CD2Q9Y426 696 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 CCL27Q9Y4X3 112 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 LYVE1Q9Y5Y7 322 aa6.75□□□□□ -1.33
VPS29-210ENST00000552130 A0A1W2PQ45 241 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 A0A1W2PQY0 241 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TCRBV5S4A2TA0A5A2 114 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TRIM43BA6NCK2 446 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 A8MVJ9 347 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 MEIS1O00470 390 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 MYO1BO43795 1136 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 KINO60870 393 aaKnown RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 F9P00740 461 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 ANXA1P04083 346 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 HEXBP07686 556 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 SNRPA1P09661 255 aaKnown RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 GNAT1P11488 350 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 FBLN1P23142 703 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TM4SF1P30408 202 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 GRK5P34947 590 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TCF7P36402 384 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 PSMB10P40306 273 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 PSMC4P43686 418 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 SLC12A3P55017 1021 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 NCKAP1LP55160 1127 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 HERVK_113P62684 666 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 YWHAHQ04917 246 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 SMAD4Q13485 552 aaKnown RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 RAB3GAP1Q15042 981 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 SEC23BQ15437 767 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TBCCQ15814 346 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 IKBIPQ70UQ0 350 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 RUFY3Q7L099 469 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 ANKS1BQ7Z6G8 1248 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 GPR149Q86SP6 731 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 GLRX5Q86SX6 157 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 PHYKPLQ8IUZ5 450 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 SCML4Q8N228 414 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 CHST13Q8NET6 341 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 CTCFLQ8NI51 663 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 SHC3Q92529 594 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TRIM43Q96BQ3 446 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 KTI12Q96EK9 354 aaPredicted RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 NTPCRQ9BSD7 190 aaKnown RBP6.74□□□□□ -1.33
VPS29-210ENST00000552130 RTKNQ9BST9 563 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 ADI1Q9BV57 179 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 JAM3Q9BX67 310 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 FTOQ9C0B1 505 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS29-210ENST00000552130 USP44Q9H0E7 712 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 CDIP1Q9H305 208 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 MUC13Q9H3R2 512 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 VPS37BQ9H9H4 285 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 CACNG4Q9UBN1 327 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 TMPRSS11EQ9UL52 423 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 HSF4Q9ULV5 492 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 PCDHA6Q9UN73 950 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 NAALADL1Q9UQQ1 740 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 NUMBLQ9Y6R0 609 aa6.74□□□□□ -1.33
VPS29-210ENST00000552130 RGSL1A5PLK6 1076 aa6.73□□□□□ -1.33
VPS29-210ENST00000552130 CSPG5O95196 566 aa6.73□□□□□ -1.33
VPS29-210ENST00000552130 ZNF205O95201 554 aa6.73□□□□□ -1.33
VPS29-210ENST00000552130 METTL18O95568 372 aa6.73□□□□□ -1.33
VPS29-210ENST00000552130 MMEP08473 750 aa6.73□□□□□ -1.33
VPS29-210ENST00000552130 PDHA1P08559 390 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms