RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C SPC1P46965 94 aa2.2□□□□□ -2.06
LCB4YOR171C RRP5Q05022 1729 aaKnown RBP2.2□□□□□ -2.06
LCB4YOR171C FIT2Q08906 153 aa2.2□□□□□ -2.06
LCB4YOR171C YOR314WQ12506 109 aa2.2□□□□□ -2.06
LCB4YOR171C YCR095W-AQ3E787 52 aa2.19□□□□□ -2.06
LCB4YOR171C ARO1P08566 1588 aaKnown RBP2.19□□□□□ -2.06
LCB4YOR171C NTE1Q04958 1679 aa2.18□□□□□ -2.06
LCB4YOR171C PFY1P07274 126 aa2.18□□□□□ -2.06
LCB4YOR171C YER188C-AP0C0V2 99 aa2.18□□□□□ -2.06
LCB4YOR171C FAS1P07149 2051 aaKnown RBP2.18□□□□□ -2.06
LCB4YOR171C RPS19AP07280 144 aaKnown RBP2.18□□□□□ -2.06
LCB4YOR171C RPS19BP07281 144 aaPredicted RBP2.18□□□□□ -2.06
LCB4YOR171C SED1Q01589 338 aa2.18□□□□□ -2.06
LCB4YOR171C YMR321CQ04898 105 aa2.18□□□□□ -2.06
LCB4YOR171C YKL065W-AQ2V2P2 73 aa2.18□□□□□ -2.06
LCB4YOR171C YLR285C-AQ3E771 56 aa2.18□□□□□ -2.06
LCB4YOR171C FPR2P32472 135 aa2.17□□□□□ -2.06
LCB4YOR171C IRC21Q04772 201 aa2.17□□□□□ -2.06
LCB4YOR171C COX19Q3E731 98 aa2.17□□□□□ -2.06
LCB4YOR171C YGR121W-AQ3E816 71 aa2.17□□□□□ -2.06
LCB4YOR171C GCN2P15442 1659 aa2.17□□□□□ -2.06
LCB4YOR171C FKS1P38631 1876 aaKnown RBP2.17□□□□□ -2.06
LCB4YOR171C VPS55P47111 140 aa2.16□□□□□ -2.06
LCB4YOR171C MPC2P38857 129 aa2.16□□□□□ -2.06
LCB4YOR171C YHR173CP38864 112 aa2.16□□□□□ -2.06
LCB4YOR171C SNA2P56508 79 aa2.16□□□□□ -2.06
LCB4YOR171C YMR122CQ03879 124 aa2.16□□□□□ -2.06
LCB4YOR171C YLR162WQ06235 118 aa2.16□□□□□ -2.06
LCB4YOR171C RPL26BP53221 127 aaKnown RBP2.15□□□□□ -2.07
LCB4YOR171C YKL023C-AQ2V2P3 75 aa2.15□□□□□ -2.07
LCB4YOR171C YCL048W-AQ2V2Q2 79 aa2.15□□□□□ -2.07
LCB4YOR171C SPO14P36126 1683 aa2.14□□□□□ -2.07
LCB4YOR171C PAU6P0CE90 120 aa2.14□□□□□ -2.07
LCB4YOR171C PAU18P0CE91 120 aa2.14□□□□□ -2.07
LCB4YOR171C PAU8P0CE92 120 aa2.14□□□□□ -2.07
LCB4YOR171C PAU11P0CE93 120 aa2.14□□□□□ -2.07
LCB4YOR171C QCR9P22289 66 aa2.14□□□□□ -2.07
LCB4YOR171C YSY6P38374 65 aa2.14□□□□□ -2.07
LCB4YOR171C PAU13P38725 120 aa2.14□□□□□ -2.07
LCB4YOR171C YER084WP40057 128 aa2.14□□□□□ -2.07
LCB4YOR171C PAU4P53427 120 aa2.14□□□□□ -2.07
LCB4YOR171C MRX7P53869 86 aa2.14□□□□□ -2.07
LCB4YOR171C PAU10Q03050 120 aa2.14□□□□□ -2.07
LCB4YOR171C PAU9Q3E770 120 aa2.14□□□□□ -2.07
LCB4YOR171C YOR093CQ12275 1648 aa2.14□□□□□ -2.07
LCB4YOR171C YGL014C-AP0C5N1 53 aa2.14□□□□□ -2.07
LCB4YOR171C SPI1P40092 148 aa2.14□□□□□ -2.07
LCB4YOR171C ERI1P62651 68 aaKnown RBP2.14□□□□□ -2.07
LCB4YOR171C MIX17Q03667 156 aa2.14□□□□□ -2.07
LCB4YOR171C YDR246W-AQ3E763 66 aa2.14□□□□□ -2.07
LCB4YOR171C TY4B-HP0C2J7 1802 aa2.13□□□□□ -2.07
LCB4YOR171C YBL071CP38185 102 aa2.13□□□□□ -2.07
LCB4YOR171C YRF1-1P0CX20 1796 aa2.12□□□□□ -2.07
LCB4YOR171C YRF1-5P0CX21 1796 aa2.12□□□□□ -2.07
LCB4YOR171C YRF1-8P0CX22 1796 aa2.12□□□□□ -2.07
LCB4YOR171C YIL163CP40448 117 aa2.12□□□□□ -2.07
LCB4YOR171C YJL144WP47009 104 aa2.12□□□□□ -2.07
LCB4YOR171C YGR035W-AQ45U48 73 aa2.12□□□□□ -2.07
LCB4YOR171C BUD3P25558 1636 aa2.12□□□□□ -2.07
LCB4YOR171C CHC1P22137 1653 aaKnown RBP2.11□□□□□ -2.07
LCB4YOR171C VMR1P38735 1592 aa2.11□□□□□ -2.07
LCB4YOR171C AIM4P38305 123 aaPredicted RBP2.11□□□□□ -2.07
LCB4YOR171C YJR146WP47174 117 aa2.11□□□□□ -2.07
LCB4YOR171C YDR010CQ12426 110 aa2.11□□□□□ -2.07
LCB4YOR171C USO1P25386 1790 aa2.11□□□□□ -2.07
LCB4YOR171C CCW14O13547 238 aa2.1□□□□□ -2.07
LCB4YOR171C CDC39P25655 2108 aaKnown RBP2.1□□□□□ -2.07
LCB4YOR171C BSC4P53841 131 aa2.1□□□□□ -2.07
LCB4YOR171C YHR007C-AQ07074 71 aa2.1□□□□□ -2.07
LCB4YOR171C YDL012CQ12489 107 aa2.1□□□□□ -2.07
LCB4YOR171C YIL156W-BQ2V2P4 73 aa2.1□□□□□ -2.07
LCB4YOR171C FKS3Q04952 1785 aa2.1□□□□□ -2.07
LCB4YOR171C PMD1P32634 1753 aa2.1□□□□□ -2.07
LCB4YOR171C PAU1P0CE88 120 aa2.09□□□□□ -2.07
LCB4YOR171C PAU14P0CE89 120 aa2.09□□□□□ -2.07
LCB4YOR171C RDS3Q06835 107 aaPredicted RBP2.09□□□□□ -2.07
LCB4YOR171C NUP192P47054 1683 aa2.09□□□□□ -2.07
LCB4YOR171C BPH1P25356 2167 aa2.09□□□□□ -2.08
LCB4YOR171C RPL33AP05744 107 aaKnown RBP2.09□□□□□ -2.08
LCB4YOR171C YDR114CQ04597 100 aa2.09□□□□□ -2.08
LCB4YOR171C NOP10Q6Q547 58 aaPredicted RBP2.09□□□□□ -2.08
LCB4YOR171C RIF1P29539 1916 aa2.09□□□□□ -2.08
LCB4YOR171C YSF3P0C074 85 aaPredicted RBP2.08□□□□□ -2.08
LCB4YOR171C PRM7Q12459 698 aa2.08□□□□□ -2.08
LCB4YOR171C UBR2Q07963 1872 aa2.08□□□□□ -2.08
LCB4YOR171C AIM19P40502 157 aa2.07□□□□□ -2.08
LCB4YOR171C YDR210WQ03482 75 aa2.07□□□□□ -2.08
LCB4YOR171C PAU20Q08322 120 aa2.07□□□□□ -2.08
LCB4YOR171C TY4B-JP47024 1803 aa2.07□□□□□ -2.08
LCB4YOR171C NUP188P52593 1655 aaKnown RBP2.07□□□□□ -2.08
LCB4YOR171C IML1P47170 1584 aa2.06□□□□□ -2.08
LCB4YOR171C PAU7P39545 55 aa2.06□□□□□ -2.08
LCB4YOR171C LCL2Q08045 131 aa2.06□□□□□ -2.08
LCB4YOR171C DNF2Q12675 1612 aa2.06□□□□□ -2.08
LCB4YOR171C CYR1P08678 2026 aaKnown RBP2.06□□□□□ -2.08
LCB4YOR171C RPS11AP0CX47 156 aaKnown RBP2.05□□□□□ -2.08
LCB4YOR171C RPS11BP0CX48 156 aaKnown RBP2.05□□□□□ -2.08
LCB4YOR171C MRPS12P53732 153 aa2.05□□□□□ -2.08
LCB4YOR171C CCW12Q12127 133 aa2.05□□□□□ -2.08
LCB4YOR171C TAR1Q8TGM6 124 aa2.05□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms