RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GABRB2P47870 512 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 PSMC1P62191 440 aaKnown RBP23.78■■□□□ 1.4
CDX1-201ENST00000231656 KLF1Q13351 362 aaPredicted RBP23.78■■□□□ 1.4
CDX1-201ENST00000231656 LRRC38Q5VT99 294 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 LCLAT1Q6UWP7 414 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 ACOT1Q86TX2 421 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 LRRC43Q8N309 656 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 TRIM31Q9BZY9 425 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 DPEP3Q9H4B8 488 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 VPS18Q9P253 973 aa23.78■■□□□ 1.4
CDX1-201ENST00000231656 PRG3Q9Y2Y8 225 aaPredicted RBP23.78■■□□□ 1.4
CDX1-201ENST00000231656 TIMM13Q9Y5L4 95 aaPredicted RBP23.78■■□□□ 1.4
CDX1-201ENST00000231656 COL4A6Q14031 1691 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 PTPRSQ13332 1948 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 F8VP50 259 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 GOLGA8SH3BPF8 625 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 PDGFRBP09619 1106 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 ODC1P11926 461 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 SSR1P43307 286 aaKnown RBP23.77■■□□□ 1.4
CDX1-201ENST00000231656 PDCLQ13371 301 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 TMCO2Q7Z6W1 182 aaPredicted RBP23.77■■□□□ 1.4
CDX1-201ENST00000231656 C12orf29Q8N999 325 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 SLCO2A1Q92959 643 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 SUSD3Q96L08 255 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 ZIM3Q96PE6 472 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 HTATIP2Q9BUP3 242 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 ZDHHC18Q9NUE0 388 aa23.77■■□□□ 1.4
CDX1-201ENST00000231656 NRP1O14786 923 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 RNF40O75150 1001 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 ALDH2P05091 517 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 RALAP11233 206 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 RFC1P35251 1148 aaPredicted RBP23.76■■□□□ 1.39
CDX1-201ENST00000231656 ZNF268Q14587 947 aaPredicted RBP23.76■■□□□ 1.39
CDX1-201ENST00000231656 ANKS1BQ7Z6G8 1248 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 CRYBG2Q8N1P7 616 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 JOSD2Q8TAC2 188 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 C1orf54Q8WWF1 131 aa23.76■■□□□ 1.39
CDX1-201ENST00000231656 CYP11A1P05108 521 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 KRT3P12035 628 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 SYN1P17600 705 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 GJC1P36383 396 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 FLT3P36888 993 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 KCNJ1P48048 391 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 GYS2P54840 703 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 CFAP58Q5T655 872 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 COL13A1Q5TAT6 717 aaPredicted RBP23.75■■□□□ 1.39
CDX1-201ENST00000231656 ZNF365Q70YC5 407 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 CCDC50Q8IVM0 306 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 FNIP1Q8TF40 1166 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 MCRS1Q96EZ8 462 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 ABHD8Q96I13 439 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 OSBPL8Q9BZF1 889 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 GRHL1Q9NZI5 618 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 FGBP02675 491 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 LHX1P48742 406 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 SLC11A1P49279 550 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 FAM117BQ6P1L5 589 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 ZDHHC24Q6UX98 284 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 CCDC105Q8IYK2 499 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 UBA3Q8TBC4 463 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 LRRC45Q96CN5 670 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 ZNF689Q96CS4 500 aaPredicted RBP23.75■■□□□ 1.39
CDX1-201ENST00000231656 TMEM175Q9BSA9 504 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 DCLK3Q9C098 648 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 SYNCQ9H7C4 482 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 CHST7Q9NS84 486 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 DDX43Q9NXZ2 648 aaKnown RBP23.75■■□□□ 1.39
CDX1-201ENST00000231656 TSPAN16Q9UKR8 245 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 SNX24Q9Y343 169 aa23.75■■□□□ 1.39
CDX1-201ENST00000231656 STILQ15468 1287 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 ATP13A4Q4VNC1 1196 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 RCOR2Q8IZ40 523 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 TNIP3Q96KP6 325 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 LPIN3Q9BQK8 851 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 HEMGNQ9BXL5 484 aa23.74■■□□□ 1.39
CDX1-201ENST00000231656 RC3H2Q9HBD1 1191 aaKnown RBP23.74■■□□□ 1.39
CDX1-201ENST00000231656 R3HDM2Q9Y2K5 976 aaKnown RBP23.74■■□□□ 1.39
CDX1-201ENST00000231656 OPA1O60313 960 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 TADA2AO75478 443 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 GALTP07902 379 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 PSMA2P25787 234 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 RPL21P46778 160 aaKnown RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 UAP1Q16222 522 aaPredicted RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 PPP1R26Q5T8A7 1209 aaPredicted RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 SPATA18Q8TC71 538 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 RBM41Q96IZ5 413 aaKnown RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 SLITRK1Q96PX8 696 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 COLEC11Q9BWP8 271 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 DNAI2Q9GZS0 605 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 METTL5Q9NRN9 209 aaKnown RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 FAM49BQ9NUQ9 324 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 KLHL11Q9NVR0 708 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 DSEQ9UL01 958 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ARHGEF37A1IGU5 675 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ECEL1O95672 775 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 ACAT1P24752 427 aaKnown RBP23.73■■□□□ 1.39
CDX1-201ENST00000231656 GBP1P32455 592 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 HSD17B3P37058 310 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 GOLGA7BQ2TAP0 167 aa23.73■■□□□ 1.39
CDX1-201ENST00000231656 PKDCCQ504Y2 493 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms