RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	RPL18B	P0CX50	186 aa	Known RBP	4.1	□□□□□ -1.75
RAT1	YOR048C	RPL16A	P26784	199 aa	Known RBP	4.1	□□□□□ -1.75
RAT1	YOR048C	HEM13	P11353	328 aa	Known RBP	4.1	□□□□□ -1.75
RAT1	YOR048C	MRPL49	P40858	161 aa	Predicted RBP	4.1	□□□□□ -1.75
RAT1	YOR048C	YOR034C-A	Q3E735	80 aa		4.1	□□□□□ -1.75
RAT1	YOR048C	MRPL20	P22354	195 aa	Predicted RBP	4.09	□□□□□ -1.75
RAT1	YOR048C	ATX1	P38636	73 aa		4.09	□□□□□ -1.75
RAT1	YOR048C	YCR075W-A	Q3E830	75 aa		4.09	□□□□□ -1.75
RAT1	YOR048C	RPL16B	P26785	198 aa	Known RBP	4.09	□□□□□ -1.75
RAT1	YOR048C	DCV1	P43595	202 aa		4.09	□□□□□ -1.75
RAT1	YOR048C	RPA12	P32529	125 aa	Known RBP	4.08	□□□□□ -1.76
RAT1	YOR048C	TOS8	P53147	276 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	ABF2	Q02486	183 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YLR296W	Q05898	108 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YBR200W-A	Q3E755	54 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YHR022C	P38763	256 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YIR020C	P40575	100 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YOR008C-A	Q3E7B9	74 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	ABM1	P47146	123 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	YLR042C	Q07990	161 aa		4.08	□□□□□ -1.76
RAT1	YOR048C	Q0255	P03881	472 aa		4.07	□□□□□ -1.76
RAT1	YOR048C	NRG2	P38082	220 aa		4.07	□□□□□ -1.76
RAT1	YOR048C	YAR1	P46683	200 aa		4.07	□□□□□ -1.76
RAT1	YOR048C	POP7	P38291	140 aa		4.07	□□□□□ -1.76
RAT1	YOR048C	HPA2	Q06592	156 aa		4.07	□□□□□ -1.76
RAT1	YOR048C	RPS8A	P0CX39	200 aa	Known RBP	4.06	□□□□□ -1.76
RAT1	YOR048C	RPS8B	P0CX40	200 aa	Known RBP	4.06	□□□□□ -1.76
RAT1	YOR048C	YCR041W	P37265	110 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	MIG3	P39943	394 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	KEG1	P43614	200 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	TOS6	P48560	102 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	YGR219W	P53307	113 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	YLR194C	Q05777	254 aa		4.06	□□□□□ -1.76
RAT1	YOR048C	YIL059C	P40520	121 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	YIA6	P40556	373 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	FIP1	P45976	327 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	LSM6	Q06406	86 aa	Known RBP	4.05	□□□□□ -1.76
RAT1	YOR048C	SPI1	P40092	148 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	VPS55	P47111	140 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	SUT1	P53032	299 aa	Known RBP	4.05	□□□□□ -1.76
RAT1	YOR048C	TAR1	Q8TGM6	124 aa		4.05	□□□□□ -1.76
RAT1	YOR048C	YJR146W	P47174	117 aa		4.04	□□□□□ -1.76
RAT1	YOR048C	MRPS12	P53732	153 aa		4.04	□□□□□ -1.76
RAT1	YOR048C	RRG8	Q06109	277 aa		4.04	□□□□□ -1.76
RAT1	YOR048C	UGX2	P32772	223 aa		4.04	□□□□□ -1.76
RAT1	YOR048C	KRE9	P39005	276 aa		4.03	□□□□□ -1.76
RAT1	YOR048C	YIP3	P53633	176 aa		4.03	□□□□□ -1.76
RAT1	YOR048C	YKL023C-A	Q2V2P3	75 aa		4.03	□□□□□ -1.76
RAT1	YOR048C	SBH2	P52871	88 aa		4.03	□□□□□ -1.76
RAT1	YOR048C	NCE103	P53615	221 aa		4.03	□□□□□ -1.76
RAT1	YOR048C	RRT13	P40042	185 aa		4.03	□□□□□ -1.77
RAT1	YOR048C	TRP1	P00912	224 aa		4.02	□□□□□ -1.77
RAT1	YOR048C	YEL008W	P40001	126 aa		4.02	□□□□□ -1.77
RAT1	YOR048C	RPL42A	P0CX27	106 aa	Known RBP	4.02	□□□□□ -1.77
RAT1	YOR048C	RPL42B	P0CX28	106 aa	Known RBP	4.02	□□□□□ -1.77
RAT1	YOR048C	YPL278C	Q08990	100 aa		4.02	□□□□□ -1.77
RAT1	YOR048C	URM1	P40554	99 aa	Predicted RBP	4.01	□□□□□ -1.77
RAT1	YOR048C	YGR039W	P53225	103 aa		4.01	□□□□□ -1.77
RAT1	YOR048C	MRPL23	Q12487	163 aa	Predicted RBP	4.01	□□□□□ -1.77
RAT1	YOR048C	MIC12	P38341	106 aa		4	□□□□□ -1.77
RAT1	YOR048C	YAL063C-A	Q3E791	96 aa		4	□□□□□ -1.77
RAT1	YOR048C	YCL021W-A	Q96VH3	125 aa		4	□□□□□ -1.77
RAT1	YOR048C	YHR130C	P38834	111 aa		4	□□□□□ -1.77
RAT1	YOR048C	YKL069W	P36088	180 aa		4	□□□□□ -1.77
RAT1	YOR048C	HAL1	Q01766	294 aa		4	□□□□□ -1.77
RAT1	YOR048C	YMR244W	Q04018	355 aa		4	□□□□□ -1.77
RAT1	YOR048C	YNL217W	P40152	326 aa		3.99	□□□□□ -1.77
RAT1	YOR048C	SRL1	Q08673	210 aa		3.99	□□□□□ -1.77
RAT1	YOR048C	HOR7	Q05827	59 aa		3.99	□□□□□ -1.77
RAT1	YOR048C	PBI2	P0CT04	75 aa	Known RBP	3.98	□□□□□ -1.77
RAT1	YOR048C	INO2	P26798	304 aa		3.98	□□□□□ -1.77
RAT1	YOR048C	COX10	P21592	462 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	YBR219C	P38317	127 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	SHU1	P38751	150 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	YMR295C	Q03559	197 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	CCW12	Q12127	133 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	YNL146C-A	Q3E7Z1	64 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	AIM19	P40502	157 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	PBA1	Q05778	276 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	Q0297	Q9ZZV8	51 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	CWP2	P43497	92 aa		3.97	□□□□□ -1.77
RAT1	YOR048C	YOR304C-A	O14468	76 aa		3.96	□□□□□ -1.78
RAT1	YOR048C	MRPS8	Q03799	155 aa		3.96	□□□□□ -1.78
RAT1	YOR048C	RPS11A	P0CX47	156 aa	Known RBP	3.96	□□□□□ -1.78
RAT1	YOR048C	RPS11B	P0CX48	156 aa	Known RBP	3.96	□□□□□ -1.78
RAT1	YOR048C	YPL080C	Q02826	108 aa		3.96	□□□□□ -1.78
RAT1	YOR048C	SPG4	Q04438	115 aa		3.96	□□□□□ -1.78
RAT1	YOR048C	YCR001W	P25347	104 aa		3.95	□□□□□ -1.78
RAT1	YOR048C	EDC1	P53080	175 aa	Predicted RBP	3.95	□□□□□ -1.78
RAT1	YOR048C	KNH1	P50112	268 aa		3.95	□□□□□ -1.78
RAT1	YOR048C	YNL194C	P40169	301 aa		3.94	□□□□□ -1.78
RAT1	YOR048C	YHR139C-A	O13536	103 aa		3.94	□□□□□ -1.78
RAT1	YOR048C	HUR1	P45820	110 aa		3.94	□□□□□ -1.78
RAT1	YOR048C	PPT2	Q12036	173 aa		3.94	□□□□□ -1.78
RAT1	YOR048C	DUT1	P33317	147 aa		3.93	□□□□□ -1.78
RAT1	YOR048C	RAD6	P06104	172 aa		3.93	□□□□□ -1.78
RAT1	YOR048C	YHR212W-A	P0CX91	67 aa		3.92	□□□□□ -1.78
RAT1	YOR048C	SKI6	P46948	246 aa	Predicted RBP	3.92	□□□□□ -1.78
RAT1	YOR048C	PEX17	P40155	199 aa		3.92	□□□□□ -1.78
RAT1	YOR048C	RPP2A	P05319	106 aa	Known RBP	3.92	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 133.8 ms